UHGV-2096065

Genome information

Genome length 40,543 bps

CDS count 43

Completeness 99.35% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-2096065
vOTU ID	vOTU-014492
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029489\|Ga0244014_1000407\|provirus_3513_44055
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.35% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.2
Jumbo phage	No

Genome content
Genome length	40,543 bps
GC content	46.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.70%
Average CDS length	857.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2096065_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2096065_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2096065_1	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-2096065_1	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-2096065_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2096065_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2096065_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2096065_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2096065_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2096065_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2096065_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2096065_4	UniRef90	UniRef90_B0N8N2	DNA-binding helix-turn-helix protein	NA
UHGV-2096065_4	eggNOG-mapper	1111134.HMPREF1253_1209	Peptidase S24-like	NA
UHGV-2096065_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2096065_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2096065_4	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-2096065_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2096065_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2096065_5	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-2096065_5	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-2096065_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2096065_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2096065_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2096065_7	Structural annotation	PF13033	NA	NA
UHGV-2096065_12	Pfam	PF12957	NA	DUF3846
UHGV-2096065_12	Structural annotation	PF12957	NA	NA
UHGV-2096065_13	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-2096065_15	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2096065_15	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2096065_15	UniRef90	UniRef90_A0A1Y4WCX6	ParB domain-containing protein	NA
UHGV-2096065_15	eggNOG-mapper	1408437.JNJN01000030_gene1074	Belongs to the ParB family	NA
UHGV-2096065_15	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2096065_15	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2096065_15	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-2096065_15	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2096065_16	PHROG	phrog_1672	NA	unknown function
UHGV-2096065_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2096065_18	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-2096065_18	Structural annotation	PF21578	NA	NA
UHGV-2096065_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2096065_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2096065_20	UniRef90	UniRef90_A0A8B2QP55	Phage terminase small subunit	NA
UHGV-2096065_20	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-2096065_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2096065_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2096065_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2096065_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2096065_21	PHROG	phrog_5902	NA	unknown function
UHGV-2096065_21	UniRef90	UniRef90_UPI0018C4A0E6	terminase	NA
UHGV-2096065_21	eggNOG-mapper	1200557.JHWV01000001_gene277	Terminase RNaseH-like domain	NA
UHGV-2096065_21	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2096065_21	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2096065_23	PHROG	phrog_332	head-tail adaptor	connector
UHGV-2096065_23	UniRef90	UniRef90_A0A8B2QMC7	Head-to-tail connecting protein	NA
UHGV-2096065_23	eggNOG-mapper	585503.HMPREF7545_1733	Bacteriophage head to tail connecting protein	NA
UHGV-2096065_23	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-2096065_23	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-2096065_25	PHROG	phrog_458	protease	other
UHGV-2096065_25	UniRef90	UniRef90_A0A6J5NV41	Putative protease	NA
UHGV-2096065_25	eggNOG-mapper	585503.HMPREF7545_1735	NA	NA
UHGV-2096065_26	PHROG	phrog_212	major head protein	head and packaging
UHGV-2096065_26	UniRef90	UniRef90_A0A0U1KVA9	NA	NA
UHGV-2096065_26	eggNOG-mapper	585503.HMPREF7545_1736	NA	NA
UHGV-2096065_26	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-2096065_26	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2096065_27	eggNOG-mapper	585503.HMPREF7545_1737	NA	NA
UHGV-2096065_27	Structural annotation	PF21190, NF033675	NA	NA
UHGV-2096065_28	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-2096065_28	Structural annotation	PF12949	NA	NA
UHGV-2096065_29	PHROG	phrog_394	tail protein	tail
UHGV-2096065_29	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-2096065_29	eggNOG-mapper	585503.HMPREF7545_1739	NA	NA
UHGV-2096065_29	Structural annotation	PF17212	NA	NA
UHGV-2096065_30	PHROG	phrog_376	tail protein	tail
UHGV-2096065_30	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-2096065_30	eggNOG-mapper	585503.HMPREF7545_1740	NA	NA
UHGV-2096065_30	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-2096065_31	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-2096065_31	UniRef90	UniRef90_A0A3A5L1J5	NA	NA
UHGV-2096065_31	eggNOG-mapper	585503.HMPREF7545_1741	NA	NA
UHGV-2096065_31	Structural annotation	PF11039, MF_02210, NF011709, COG1247	NA	NA
UHGV-2096065_32	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-2096065_32	Structural annotation	TIGR02971	NA	NA
UHGV-2096065_33	UniRef90	UniRef90_A0A1B3X2T2	NlpC/P60 domain-containing protein	NA
UHGV-2096065_33	Structural annotation	PF01464, COG0741	NA	NA
UHGV-2096065_34	PHROG	phrog_9880	NA	unknown function
UHGV-2096065_34	eggNOG-mapper	568816.Acin_1824	NA	NA
UHGV-2096065_34	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-2096065_35	PHROG	phrog_1640	tail protein	tail
UHGV-2096065_35	eggNOG-mapper	343516.Q286Z3_9CAUD	outer membrane	NA
UHGV-2096065_36	PHROG	phrog_2837	tail protein	tail
UHGV-2096065_36	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-2096065_36	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-2096065_36	Pfam	PF14301	NA	DUF4376
UHGV-2096065_36	Structural annotation	PF14301	NA	NA
UHGV-2096065_37	PHROG	phrog_4105	NA	unknown function
UHGV-2096065_37	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-2096065_39	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-2096065_39	Structural annotation	PF21277	NA	NA
UHGV-2096065_40	PHROG	phrog_774	NA	unknown function
UHGV-2096065_40	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2096065_42	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-2096065_42	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2096065_42	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2096065_42	Structural annotation	PF08281, MF_00674, NF001073, COG2739	NA	NA
UHGV-2096065_43	KOfam	K07483	K07483; transposase	NA
UHGV-2096065_43	PHROG	phrog_151	transposase	integration and excision
UHGV-2096065_43	UniRef90	UniRef90_A0A1Q6J9F8	Transposase	NA
UHGV-2096065_43	eggNOG-mapper	718252.FP2_10890	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-2096065_43	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-2096065_43	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2096065_43	Structural annotation	PF13518, NF038385, COG2963	NA	NA