UHGV-2096611

Genome information

Genome length 36,888 bps

CDS count 46

Completeness 86.74% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-2096611
vOTU ID	vOTU-033764
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029503\|Ga0244781_100320\|provirus_2_36889
BioSample	SAMEA3708632
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	86.72
Jumbo phage	No

Genome content
Genome length	36,888 bps
GC content	51.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.27%
Average CDS length	741.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2096611_1	KOfam	K14059	int; integrase	NA
UHGV-2096611_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2096611_1	UniRef90	UniRef90_UPI001D034FB9	site-specific integrase	NA
UHGV-2096611_1	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-2096611_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2096611_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2096611_1	Structural annotation	PF00589, MF_01808, NF040815, COG0582	NA	NA
UHGV-2096611_2	PHROG	phrog_24267	NA	unknown function
UHGV-2096611_2	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-2096611_2	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-2096611_2	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2096611_4	eggNOG-mapper	568816.Acin_1300	NA	NA
UHGV-2096611_5	PHROG	phrog_5717	tail protein	tail
UHGV-2096611_5	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-2096611_5	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-2096611_5	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-2096611_5	COG	COG4675	Phage tail collar domain	NA
UHGV-2096611_5	Structural annotation	PF12571, MF_04106, COG5301	NA	NA
UHGV-2096611_6	PHROG	phrog_521	tail protein	tail
UHGV-2096611_6	UniRef90	UniRef90_UPI0008E678DD	NA	NA
UHGV-2096611_6	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-2096611_6	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2096611_6	COG	COG3778	NA	NA
UHGV-2096611_6	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2096611_7	PHROG	phrog_6	baseplate protein	tail
UHGV-2096611_7	UniRef90	UniRef90_G4Q990	Baseplate_J domain-containing protein	NA
UHGV-2096611_7	eggNOG-mapper	568816.Acin_1370	Baseplate J-like protein	NA
UHGV-2096611_7	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2096611_7	COG	COG3299	NA	NA
UHGV-2096611_7	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2096611_8	PHROG	phrog_120	baseplate protein	tail
UHGV-2096611_8	UniRef90	UniRef90_G4Q991	NA	NA
UHGV-2096611_8	eggNOG-mapper	568816.Acin_1371	NA	NA
UHGV-2096611_8	Pfam	PF10934	NA	DUF2634
UHGV-2096611_8	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2096611_9	PHROG	phrog_579	NA	unknown function
UHGV-2096611_9	UniRef90	UniRef90_A0A413QUA5	NA	NA
UHGV-2096611_9	eggNOG-mapper	1273103.NM10_01009	NA	NA
UHGV-2096611_9	Pfam	PF10844	NA	DUF2577
UHGV-2096611_9	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-2096611_10	PHROG	phrog_400	tail protein	tail
UHGV-2096611_10	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-2096611_10	eggNOG-mapper	568816.Acin_1373	NLP P60 protein	NA
UHGV-2096611_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2096611_10	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2096611_11	PHROG	phrog_380	endolysin	lysis
UHGV-2096611_11	UniRef90	UniRef90_A0A0C1UAF4	LysM domain protein	NA
UHGV-2096611_11	eggNOG-mapper	568816.Acin_1374	LysM domain	NA
UHGV-2096611_11	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2096611_11	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-2096611_12	PHROG	phrog_16692	NA	unknown function
UHGV-2096611_12	UniRef90	UniRef90_G4Q995	Phage tail tape measure protein, TP901 family, core region domain protein	NA
UHGV-2096611_12	eggNOG-mapper	568816.Acin_1375	Phage-related minor tail protein	NA
UHGV-2096611_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2096611_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2096611_12	COG	COG5283	Phage-related tail protein	NA
UHGV-2096611_12	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-2096611_13	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-2096611_13	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-2096611_13	eggNOG-mapper	568816.Acin_1376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2096611_13	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2096611_13	Structural annotation	PF08890	NA	NA
UHGV-2096611_14	PHROG	phrog_365	tail protein	tail
UHGV-2096611_14	UniRef90	UniRef90_U7UKD6	PF09393 family protein	NA
UHGV-2096611_14	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-2096611_14	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2096611_14	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2096611_15	PHROG	phrog_1480	tail sheath	tail
UHGV-2096611_15	UniRef90	UniRef90_G4Q998	Phage_sheath_1C domain-containing protein	NA
UHGV-2096611_15	eggNOG-mapper	568816.Acin_1378	Phage tail sheath C-terminal domain	NA
UHGV-2096611_15	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2096611_15	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2096611_15	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2096611_16	PHROG	phrog_525	NA	unknown function
UHGV-2096611_16	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-2096611_16	Pfam	PF20765	NA	DUF6838
UHGV-2096611_16	Structural annotation	PF20765	NA	NA
UHGV-2096611_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2096611_17	UniRef90	UniRef90_UPI0005EBC23C	HK97 gp10 family phage protein	NA
UHGV-2096611_17	eggNOG-mapper	1273103.NM10_01049	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2096611_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2096611_17	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2096611_18	PHROG	phrog_615	head-tail adaptor	connector
UHGV-2096611_18	UniRef90	UniRef90_UPI001C3978D4	ABC transporter ATP-binding protein	NA
UHGV-2096611_18	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-2096611_18	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2096611_19	eggNOG-mapper	1273103.NM10_01059	NA	NA
UHGV-2096611_21	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-2096611_21	UniRef90	UniRef90_G4Q9A1	Putative head protein	NA
UHGV-2096611_21	eggNOG-mapper	568816.Acin_1381	Phage Mu protein F like protein	NA
UHGV-2096611_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2096611_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2096611_21	COG	COG2369	NA	NA
UHGV-2096611_21	Structural annotation	PF04233, TIGR01641, COG2357	NA	NA
UHGV-2096611_22	PHROG	phrog_247	major head protein	head and packaging
UHGV-2096611_22	UniRef90	UniRef90_G4Q9A2	Coat protein	NA
UHGV-2096611_22	eggNOG-mapper	568816.Acin_1382	NA	NA
UHGV-2096611_22	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-2096611_22	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-2096611_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2096611_23	UniRef90	UniRef90_G4Q9A3	Phage minor structural protein GP20	NA
UHGV-2096611_23	eggNOG-mapper	568816.Acin_1383	Phage minor structural protein GP20	NA
UHGV-2096611_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2096611_23	Structural annotation	PF06810	NA	NA
UHGV-2096611_24	PHROG	phrog_29127	NA	unknown function
UHGV-2096611_24	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-2096611_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-2096611_25	UniRef90	UniRef90_G4Q9A5	SPP1 family phage portal protein	NA
UHGV-2096611_25	eggNOG-mapper	568816.Acin_1385	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2096611_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2096611_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2096611_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2096611_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2096611_26	UniRef90	UniRef90_G4Q9A6	Phage terminase large subunit	NA
UHGV-2096611_26	eggNOG-mapper	568816.Acin_1386	Phage terminase, large subunit	NA
UHGV-2096611_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2096611_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2096611_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2096611_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2096611_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2096611_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2096611_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2096611_27	UniRef90	UniRef90_A0A851IDK6	Terminase small subunit	NA
UHGV-2096611_27	eggNOG-mapper	526218.Sterm_1425	terminase small subunit	NA
UHGV-2096611_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2096611_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2096611_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2096611_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2096611_28	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-2096611_29	PHROG	phrog_236	nucleotide kinase	other
UHGV-2096611_29	UniRef90	UniRef90_UPI0004132AF9	NA	NA
UHGV-2096611_29	eggNOG-mapper	743719.PaelaDRAFT_2382	sigma factor activity	NA
UHGV-2096611_29	Pfam	PF11753	NA	DUF3310
UHGV-2096611_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2096611_31	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2096611_31	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2096611_31	UniRef90	UniRef90_UPI000CF8B1CF	DEAD/DEAH box helicase	NA
UHGV-2096611_31	eggNOG-mapper	592028.GCWU000321_01367	SNF2 family	NA
UHGV-2096611_31	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2096611_31	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2096611_31	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2096611_31	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2096611_31	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2096611_32	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2096611_32	UniRef90	UniRef90_UPI000CF922F1	VRR-NUC domain-containing protein	NA
UHGV-2096611_32	eggNOG-mapper	1401067.HMPREF0872_06855	VRR_NUC	NA
UHGV-2096611_32	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2096611_32	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-2096611_33	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2096611_33	UniRef90	UniRef90_UPI000CF9E394	virulence-associated E family protein	NA
UHGV-2096611_33	eggNOG-mapper	592028.GCWU000321_01365	Virulence-associated protein E	NA
UHGV-2096611_33	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2096611_33	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2096611_33	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2096611_34	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2096611_34	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2096611_34	UniRef90	UniRef90_UPI000CFA6F56	DNA polymerase	NA
UHGV-2096611_34	eggNOG-mapper	592028.GCWU000321_01364	DNA polymerase	NA
UHGV-2096611_34	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2096611_34	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2096611_34	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2096611_35	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2096611_35	UniRef90	UniRef90_UPI000CF9344A	NA	NA
UHGV-2096611_35	eggNOG-mapper	592028.GCWU000321_01363	NA	NA
UHGV-2096611_35	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2096611_35	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2096611_36	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-2096611_36	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2096611_36	UniRef90	UniRef90_UPI000CF895FD	NA	NA
UHGV-2096611_36	eggNOG-mapper	592028.GCWU000321_01362	NA	NA
UHGV-2096611_36	Pfam	PF10926	NA	DUF2800
UHGV-2096611_36	COG	COG2887	RecB family exonuclease	NA
UHGV-2096611_36	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2096611_37	PHROG	phrog_18562	NA	unknown function
UHGV-2096611_37	eggNOG-mapper	679201.HMPREF9334_00305	NA	NA
UHGV-2096611_40	PHROG	phrog_1499	NA	unknown function
UHGV-2096611_40	eggNOG-mapper	568816.Acin_1400	AAA ATPase domain	NA
UHGV-2096611_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2096611_43	UniRef90	UniRef90_UPI001DF7A5E3	helix-turn-helix transcriptional regulator	NA
UHGV-2096611_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2096611_43	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-2096611_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2096611_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2096611_44	UniRef90	UniRef90_UPI001D08154B	helix-turn-helix transcriptional regulator	NA
UHGV-2096611_44	eggNOG-mapper	1235790.C805_01005	Helix-turn-helix domain protein	NA
UHGV-2096611_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2096611_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2096611_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2096611_45	PHROG	phrog_87	metallo-protease	other
UHGV-2096611_45	UniRef90	UniRef90_A0A8D5A4J0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2096611_45	eggNOG-mapper	1123250.KB908434_gene7	Zn peptidase	NA
UHGV-2096611_45	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2096611_45	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2096611_45	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2096611_46	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2096611_46	PHROG	phrog_95	integrase	integration and excision
UHGV-2096611_46	UniRef90	UniRef90_UPI000978E3CA	recombinase family protein	NA
UHGV-2096611_46	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-2096611_46	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2096611_46	Pfam	PF07508	Recombinase	Recombinase
UHGV-2096611_46	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2096611_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2096611_46	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA