UHGV-2096612

Genome information

Genome length 35,641 bps

CDS count 53

Completeness 99.94% (high-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-2096612
vOTU ID	vOTU-008253
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029503\|Ga0244781_100060\|provirus_8672_49789
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.51
Jumbo phage	No

Genome content
Genome length	35,641 bps
GC content	42.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.10%
Average CDS length	629.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2096612_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2096612_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2096612_1	UniRef90	UniRef90_A0A374E9M4	Recombinase family protein	NA
UHGV-2096612_1	eggNOG-mapper	97139.C824_00068	Recombinase	NA
UHGV-2096612_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2096612_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2096612_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2096612_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2096612_2	PHROG	phrog_38135	NA	unknown function
UHGV-2096612_2	UniRef90	UniRef90_UPI001F3985DB	NA	NA
UHGV-2096612_2	eggNOG-mapper	411465.PEPMIC_00706	NA	NA
UHGV-2096612_2	Pfam	PF14020	NA	DUF4236
UHGV-2096612_2	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-2096612_2	Structural annotation	PF14020, PF21602	NA	NA
UHGV-2096612_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2096612_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2096612_4	UniRef90	UniRef90_A0A3E4LWU1	XRE family transcriptional regulator	NA
UHGV-2096612_4	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-2096612_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2096612_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2096612_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2096612_11	PHROG	phrog_9607	NA	unknown function
UHGV-2096612_11	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-2096612_11	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-2096612_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2096612_15	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-2096612_15	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2096612_16	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2096612_16	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2096612_16	UniRef90	UniRef90_A0A844KCI1	Ribonuclease HI	NA
UHGV-2096612_16	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-2096612_16	Pfam	PF00075	RNase H	RNase_H
UHGV-2096612_16	COG	COG0328	Ribonuclease HI	NA
UHGV-2096612_16	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2096612_17	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-2096612_18	PHROG	phrog_4433	NA	unknown function
UHGV-2096612_18	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-2096612_19	PHROG	phrog_8470	NA	unknown function
UHGV-2096612_19	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-2096612_19	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-2096612_19	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2096612_19	Structural annotation	PF14284	NA	NA
UHGV-2096612_20	PHROG	phrog_15077	NA	unknown function
UHGV-2096612_20	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-2096612_20	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-2096612_20	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2096612_21	eggNOG-mapper	1196322.A370_05726	NA	NA
UHGV-2096612_22	PHROG	phrog_7566	NA	unknown function
UHGV-2096612_22	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-2096612_26	PHROG	phrog_8684	NA	unknown function
UHGV-2096612_26	UniRef90	UniRef90_A0A373MQ88	YopX domain-containing protein	NA
UHGV-2096612_26	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-2096612_26	Pfam	PF09643	YopX protein	YopX
UHGV-2096612_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2096612_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2096612_27	UniRef90	UniRef90_A0A373MPD0	XRE family transcriptional regulator	NA
UHGV-2096612_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2096612_30	UniRef90	UniRef90_UPI000E49B095	NA	NA
UHGV-2096612_30	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-2096612_30	Pfam	PF07374	NA	DUF1492
UHGV-2096612_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2096612_30	Structural annotation	PF07374, MF_00674, TIGR02984, COG1595	NA	NA
UHGV-2096612_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2096612_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2096612_31	UniRef90	UniRef90_D4M587	HNH endonuclease	NA
UHGV-2096612_31	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-2096612_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2096612_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2096612_31	Structural annotation	PF09889, COG4068	NA	NA
UHGV-2096612_32	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2096612_32	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-2096612_32	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-2096612_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2096612_32	COG	COG5484	NA	NA
UHGV-2096612_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2096612_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2096612_33	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-2096612_33	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-2096612_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2096612_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2096612_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2096612_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2096612_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-2096612_34	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-2096612_34	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-2096612_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2096612_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2096612_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2096612_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2096612_35	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2096612_35	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-2096612_35	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-2096612_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2096612_35	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2096612_35	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2096612_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-2096612_36	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-2096612_36	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-2096612_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2096612_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2096612_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2096612_36	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-2096612_38	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-2096612_38	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2096612_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2096612_39	Structural annotation	PF05657	NA	NA
UHGV-2096612_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2096612_40	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-2096612_40	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2096612_40	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-2096612_41	PHROG	phrog_88	major tail protein	tail
UHGV-2096612_41	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-2096612_41	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-2096612_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2096612_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2096612_43	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2096612_43	PHROG	phrog_23464	NA	unknown function
UHGV-2096612_43	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-2096612_43	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2096612_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2096612_44	UniRef90	UniRef90_UPI000E50043B	phage tail protein	NA
UHGV-2096612_44	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-2096612_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-2096612_44	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2096612_45	PHROG	phrog_13289	tail protein	tail
UHGV-2096612_45	UniRef90	UniRef90_D4M5A0	Phage minor structural protein, N-terminal region	NA
UHGV-2096612_45	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-2096612_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2096612_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2096612_45	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-2096612_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2096612_46	PHROG	phrog_14030	NA	unknown function
UHGV-2096612_46	UniRef90	UniRef90_A0A373N7H3	Peptidase M23	NA
UHGV-2096612_46	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-2096612_46	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-2096612_46	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-2096612_46	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2096612_46	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-2096612_47	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-2096612_47	PHROG	phrog_10972	tail fiber protein	tail
UHGV-2096612_47	UniRef90	UniRef90_A0A374E9Q0	Collagen-like protein	NA
UHGV-2096612_47	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2096612_47	Structural annotation	PF10651, NF007636, COG5456	NA	NA
UHGV-2096612_48	PHROG	phrog_16164	NA	unknown function
UHGV-2096612_48	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-2096612_48	Structural annotation	PF10651, NF032891	NA	NA
UHGV-2096612_49	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2096612_49	PHROG	phrog_819	tail protein	tail
UHGV-2096612_49	UniRef90	UniRef90_UPI0011C154AF	collagen-like protein	NA
UHGV-2096612_49	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-2096612_49	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2096612_50	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2096612_50	PHROG	phrog_21765	NA	unknown function
UHGV-2096612_50	UniRef90	UniRef90_UPI001A9A6571	collagen-like protein	NA
UHGV-2096612_50	eggNOG-mapper	877414.ATWA01000019_gene2051	NA	NA
UHGV-2096612_50	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2096612_50	Structural annotation	PF05737	NA	NA
UHGV-2096612_51	UniRef90	UniRef90_UPI001C0C21D5	acyl carrier protein	NA
UHGV-2096612_51	eggNOG-mapper	1235799.C818_04237	NA	NA
UHGV-2096612_51	Structural annotation	PF14301	NA	NA
UHGV-2096612_52	PHROG	phrog_20274	NA	unknown function
UHGV-2096612_52	UniRef90	UniRef90_A0A173TUK0	Predicted membrane protein	NA
UHGV-2096612_52	eggNOG-mapper	411902.CLOBOL_05645	NA	NA
UHGV-2096612_52	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-2096612_52	COG	COG4905	NA	NA
UHGV-2096612_52	Structural annotation	PF06541, COG4905	NA	NA
UHGV-2096612_53	PHROG	phrog_37799	NA	unknown function
UHGV-2096612_53	UniRef90	UniRef90_A0A373N7C7	Protein utxA	NA
UHGV-2096612_53	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-2096612_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2096612_53	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2096612_53	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2096612_53	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA