UHGV-2096872

Genome information

Genome length 39,059 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-2096872
vOTU ID	vOTU-014087
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029456\|Ga0244119_100014\|provirus_79484_118542
BioSample	SAMEA3708524
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.02
Jumbo phage	No

Genome content
Genome length	39,059 bps
GC content	36.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	88.85%
Average CDS length	610.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2096872_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2096872_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2096872_1	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-2096872_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-2096872_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2096872_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2096872_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2096872_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2096872_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-2096872_2	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-2096872_2	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2096872_2	UniRef90	UniRef90_R5AEV9	Cytotoxic translational repressor of toxin-antitoxin stability system	NA
UHGV-2096872_2	eggNOG-mapper	97139.C824_00468	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-2096872_2	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-2096872_2	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-2096872_2	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-2096872_3	eggNOG-mapper	1235792.C808_02931	NA	NA
UHGV-2096872_4	PHROG	phrog_1847	NA	unknown function
UHGV-2096872_4	UniRef90	UniRef90_A0A174S171	Membrane-bound metallopeptidase	NA
UHGV-2096872_4	eggNOG-mapper	483218.BACPEC_01182	T5orf172	NA
UHGV-2096872_4	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2096872_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2096872_4	Structural annotation	PF13250, NF041454	NA	NA
UHGV-2096872_5	PHROG	phrog_3845	NA	unknown function
UHGV-2096872_5	UniRef90	UniRef90_UPI0019563C69	PH domain-containing protein	NA
UHGV-2096872_5	eggNOG-mapper	768710.DesyoDRAFT_5205	PFAM Tellurite resistance protein TerB	NA
UHGV-2096872_5	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-2096872_6	PHROG	phrog_20886	NA	unknown function
UHGV-2096872_6	UniRef90	UniRef90_A0A660M5N1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2096872_6	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-2096872_6	Structural annotation	PF06114	NA	NA
UHGV-2096872_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2096872_7	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2096872_7	UniRef90	UniRef90_A0A3D5LQZ9	XRE family transcriptional regulator	NA
UHGV-2096872_7	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-2096872_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2096872_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2096872_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2096872_8	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2096872_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2096872_8	UniRef90	UniRef90_A0A356C4L0	XRE family transcriptional regulator	NA
UHGV-2096872_8	eggNOG-mapper	1161413.HMPREF1510_1296	Transcriptional regulator	NA
UHGV-2096872_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2096872_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2096872_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2096872_12	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2096872_12	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-2096872_12	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-2096872_14	PHROG	phrog_674	NA	unknown function
UHGV-2096872_14	UniRef90	UniRef90_A0A371ATG1	NA	NA
UHGV-2096872_14	eggNOG-mapper	357809.Cphy_2989	NA	NA
UHGV-2096872_14	Pfam	PF07083	NA	DUF1351
UHGV-2096872_14	Structural annotation	PF07083	NA	NA
UHGV-2096872_15	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2096872_15	UniRef90	UniRef90_A0A7C6JWG7	Recombinase	NA
UHGV-2096872_15	eggNOG-mapper	1415775.U729_2586	ERF superfamily	NA
UHGV-2096872_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-2096872_15	Structural annotation	PF04404	NA	NA
UHGV-2096872_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2096872_16	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-2096872_16	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-2096872_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2096872_17	PHROG	phrog_7566	NA	unknown function
UHGV-2096872_17	UniRef90	UniRef90_A0A3D5LSW4	Phosphoenolpyruvate carboxykinase	NA
UHGV-2096872_17	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-2096872_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2096872_18	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2096872_18	UniRef90	UniRef90_A0A6N7WNE3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2096872_18	eggNOG-mapper	33035.JPJF01000071_gene4466	crossover junction endodeoxyribonuclease activity	NA
UHGV-2096872_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2096872_18	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2096872_19	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2096872_19	UniRef90	UniRef90_E4QBK3	Putative transcriptional regulator, GntR family	NA
UHGV-2096872_19	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-2096872_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2096872_19	Structural annotation	PF09202, MF_01819, TIGR01610, COG1959	NA	NA
UHGV-2096872_21	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2096872_21	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2096872_21	UniRef90	UniRef90_A0A415UM63	Oxidoreductase	NA
UHGV-2096872_21	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-2096872_21	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2096872_21	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2096872_21	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2096872_21	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2096872_22	UniRef90	UniRef90_A0A5D0WN28	LLM class flavin-dependent oxidoreductase	NA
UHGV-2096872_22	eggNOG-mapper	394503.Ccel_2966	NA	NA
UHGV-2096872_22	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA
UHGV-2096872_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2096872_25	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-2096872_25	Structural annotation	PF02996	NA	NA
UHGV-2096872_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2096872_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2096872_27	UniRef90	UniRef90_A0A356C6K0	Terminase small subunit	NA
UHGV-2096872_27	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-2096872_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2096872_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2096872_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2096872_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2096872_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2096872_28	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-2096872_28	eggNOG-mapper	1415775.U729_2599	Phage terminase, large subunit, PBSX family	NA
UHGV-2096872_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2096872_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2096872_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2096872_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-2096872_29	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-2096872_29	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-2096872_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2096872_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2096872_30	UniRef90	UniRef90_A0A3D5LQU4	Minor capsid protein	NA
UHGV-2096872_30	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2096872_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2096872_30	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2096872_30	Structural annotation	PF06152	NA	NA
UHGV-2096872_31	eggNOG-mapper	596319.STAWA0001_1959	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2096872_31	COG	COG2369	NA	NA
UHGV-2096872_32	UniRef90	UniRef90_UPI001D0C09A5	head morphogenesis protein	NA
UHGV-2096872_32	eggNOG-mapper	984892.SPSE_1075	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2096872_32	COG	COG2369	NA	NA
UHGV-2096872_34	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-2096872_34	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-2096872_34	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-2096872_35	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2096872_35	UniRef90	UniRef90_A0A3D5LSU5	Phage regulatory protein	NA
UHGV-2096872_35	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-2096872_35	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2096872_35	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2096872_35	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2096872_35	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2096872_35	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-2096872_37	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2096872_37	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-2096872_38	PHROG	phrog_422	major head protein	head and packaging
UHGV-2096872_38	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-2096872_38	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-2096872_38	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2096872_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2096872_39	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-2096872_40	PHROG	phrog_8710	NA	unknown function
UHGV-2096872_40	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-2096872_40	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2096872_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2096872_41	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-2096872_41	Structural annotation	PF11114	NA	NA
UHGV-2096872_42	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2096872_42	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-2096872_42	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-2096872_42	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2096872_42	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2096872_43	PHROG	phrog_820	major tail protein	tail
UHGV-2096872_43	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-2096872_43	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-2096872_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2096872_44	PHROG	phrog_8300	NA	unknown function
UHGV-2096872_44	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-2096872_44	Structural annotation	PF06896	NA	NA
UHGV-2096872_45	PHROG	phrog_8355	NA	unknown function
UHGV-2096872_45	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-2096872_45	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-2096872_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2096872_45	Structural annotation	PF06854	NA	NA
UHGV-2096872_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2096872_46	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-2096872_46	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-2096872_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2096872_46	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2096872_47	PHROG	phrog_1194	NA	unknown function
UHGV-2096872_47	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-2096872_47	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2096872_48	PHROG	phrog_1401	NA	unknown function
UHGV-2096872_48	Structural annotation	PF07761	NA	NA
UHGV-2096872_49	PHROG	phrog_6616	tail protein	tail
UHGV-2096872_49	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-2096872_49	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-2096872_49	COG	COG4926	Phage-related protein	NA
UHGV-2096872_49	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2096872_50	Structural annotation	PF04721	NA	NA
UHGV-2096872_52	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2096872_52	PHROG	phrog_1	integrase	integration and excision
UHGV-2096872_52	UniRef90	UniRef90_UPI0011DD7E30	tyrosine-type recombinase/integrase	NA
UHGV-2096872_52	eggNOG-mapper	33035.JPJF01000058_gene3673	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2096872_52	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2096872_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2096872_52	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2096872_52	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2096872_57	PHROG	phrog_199	holin	lysis
UHGV-2096872_57	UniRef90	UniRef90_A0A3B8UJ75	Holin	NA
UHGV-2096872_57	eggNOG-mapper	483218.BACPEC_01140	Bacteriophage holin family	NA
UHGV-2096872_57	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2096872_57	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2096872_57	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2096872_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA