UHGV-2096881

Genome information

Genome length 22,317 bps

CDS count 28

Completeness 52.79% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-2096881
vOTU ID	vOTU-015698
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029503\|Ga0244781_100814\|provirus_3_22319
BioSample	SAMEA3708632
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.61
Jumbo phage	No

Genome content
Genome length	22,317 bps
GC content	52.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	91.44%
Average CDS length	729.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2096881_1	Structural annotation	TIGR01636	NA	NA
UHGV-2096881_2	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2096881_2	UniRef90	UniRef90_G4L0H2	Putative transposase	NA
UHGV-2096881_2	eggNOG-mapper	693746.OBV_18020	transposase activity	NA
UHGV-2096881_2	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-2096881_2	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2096881_2	Structural annotation	PF07141	NA	NA
UHGV-2096881_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2096881_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2096881_3	UniRef90	UniRef90_UPI000C08C328	PBSX family phage terminase large subunit	NA
UHGV-2096881_3	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-2096881_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2096881_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2096881_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-2096881_3	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2096881_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-2096881_4	UniRef90	UniRef90_UPI0004B97A78	capsid protein	NA
UHGV-2096881_4	eggNOG-mapper	663278.Ethha_0090	NA	NA
UHGV-2096881_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2096881_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2096881_5	UniRef90	UniRef90_A0A143ZWR0	Phage minor capsid protein 2	NA
UHGV-2096881_5	eggNOG-mapper	663278.Ethha_0499	NA	NA
UHGV-2096881_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2096881_5	COG	COG2369	NA	NA
UHGV-2096881_5	Structural annotation	PF06152, PF12106	NA	NA
UHGV-2096881_6	eggNOG-mapper	1121335.Clst_0388	NA	NA
UHGV-2096881_7	eggNOG-mapper	999413.HMPREF1094_00216	COG NOG36366 non supervised orthologous group	NA
UHGV-2096881_7	Structural annotation	PF06810	NA	NA
UHGV-2096881_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-2096881_8	UniRef90	UniRef90_UPI000C078656	phage major capsid protein	NA
UHGV-2096881_8	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-2096881_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2096881_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2096881_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2096881_8	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2096881_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2096881_9	eggNOG-mapper	665956.HMPREF1032_03064	NA	NA
UHGV-2096881_10	PHROG	phrog_3366	NA	unknown function
UHGV-2096881_10	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2096881_10	Pfam	PF20536	NA	DUF6751
UHGV-2096881_10	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2096881_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2096881_11	UniRef90	UniRef90_A0A3A4VT60	Capsid protein	NA
UHGV-2096881_11	eggNOG-mapper	645991.Sgly_0344	NA	NA
UHGV-2096881_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2096881_11	Structural annotation	PF11114	NA	NA
UHGV-2096881_12	PHROG	phrog_3266	tail completion	connector
UHGV-2096881_12	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-2096881_12	Structural annotation	PF08873	NA	NA
UHGV-2096881_13	PHROG	phrog_3099	NA	unknown function
UHGV-2096881_13	eggNOG-mapper	1120746.CCNL01000014_gene2102	NA	NA
UHGV-2096881_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2096881_14	PHROG	phrog_11299	NA	unknown function
UHGV-2096881_14	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-2096881_14	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-2096881_14	Structural annotation	PF10666	NA	NA
UHGV-2096881_15	PHROG	phrog_706	NA	unknown function
UHGV-2096881_15	UniRef90	UniRef90_A0A1C6I6N3	Bacteriophage Gp15 protein	NA
UHGV-2096881_15	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-2096881_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2096881_15	Structural annotation	PF06854	NA	NA
UHGV-2096881_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2096881_16	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-2096881_16	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-2096881_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2096881_16	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2096881_17	PHROG	phrog_1194	NA	unknown function
UHGV-2096881_17	Pfam	PF20458	NA	DUF6711
UHGV-2096881_17	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2096881_18	PHROG	phrog_2546	NA	unknown function
UHGV-2096881_18	UniRef90	UniRef90_A0A8H0Z185	Zinc ribbon domain-containing protein	NA
UHGV-2096881_18	eggNOG-mapper	1582156.A0A0A8WFW4_9CAUD	NA	NA
UHGV-2096881_18	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2096881_18	Pfam	PF00542	Ribosomal protein L7/L12 C-terminal domain	Ribosomal_L12
UHGV-2096881_18	Structural annotation	PF13240, TIGR04165	NA	NA
UHGV-2096881_21	PHROG	phrog_13879	NA	unknown function
UHGV-2096881_21	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-2096881_21	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2096881_24	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2096881_24	PHROG	phrog_435	endolysin	lysis
UHGV-2096881_24	UniRef90	UniRef90_A0A1V5TUC9	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2096881_24	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-2096881_24	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2096881_24	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2096881_24	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-2096881_26	PHROG	phrog_297	holin	lysis
UHGV-2096881_26	UniRef90	UniRef90_R5Y8G8	Phage holin	NA
UHGV-2096881_26	eggNOG-mapper	1229783.C273_06103	COG5546 Small integral membrane protein	NA
UHGV-2096881_26	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2096881_26	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2096881_26	COG	COG5546	NA	NA
UHGV-2096881_26	Structural annotation	PF04531, TIGR01598, COG5546	NA	NA
UHGV-2096881_27	eggNOG-mapper	720554.Clocl_1818	NA	NA