UHGV-2096940

Genome information

Genome length 68,946 bps

CDS count 106

Completeness 99.74% (high-quality)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-2096940
vOTU ID	vOTU-064755
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029471\|Ga0244196_100012\|provirus_229160_298105
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.44
Jumbo phage	No

Genome content
Genome length	68,946 bps
GC content	40.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	106
CDS density	85.95%
Average CDS length	561.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2096940_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2096940_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2096940_1	UniRef90	UniRef90_UPI001C37B834	site-specific integrase	NA
UHGV-2096940_1	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-2096940_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2096940_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2096940_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2096940_1	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2096940_2	eggNOG-mapper	763034.HMPREF9446_02113	NA	NA
UHGV-2096940_3	eggNOG-mapper	1287476.HMPREF1651_10410	NA	NA
UHGV-2096940_4	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2096940_4	PHROG	phrog_1	integrase	integration and excision
UHGV-2096940_4	UniRef90	UniRef90_A0A6G0G355	Tyrosine-type recombinase/integrase	NA
UHGV-2096940_4	eggNOG-mapper	742727.HMPREF9447_04803	Phage integrase family	NA
UHGV-2096940_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2096940_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2096940_4	Structural annotation	PF00589, MF_02055, NF001399, COG4974	NA	NA
UHGV-2096940_6	Structural annotation	PF11184	NA	NA
UHGV-2096940_9	eggNOG-mapper	471870.BACINT_00445	NA	NA
UHGV-2096940_10	UniRef90	UniRef90_D1K5B5	LPD29 domain-containing protein	NA
UHGV-2096940_10	eggNOG-mapper	1235803.C825_02554	NA	NA
UHGV-2096940_10	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-2096940_10	Structural annotation	PF18847	NA	NA
UHGV-2096940_11	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2096940_11	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2096940_11	UniRef90	UniRef90_A0A6G0G3F3	SF3 helicase domain-containing protein	NA
UHGV-2096940_11	eggNOG-mapper	1236504.HMPREF2132_11050	Phage plasmid primase, P4 family domain protein	NA
UHGV-2096940_11	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2096940_11	Pfam	PF19263	NA	DUF5906
UHGV-2096940_11	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2096940_15	eggNOG-mapper	742727.HMPREF9447_04817	NA	NA
UHGV-2096940_15	Structural annotation	PF03592	NA	NA
UHGV-2096940_16	eggNOG-mapper	742727.HMPREF9447_04824	NA	NA
UHGV-2096940_16	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-2096940_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-2096940_17	UniRef90	UniRef90_UPI0015F2F83C	phage portal protein	NA
UHGV-2096940_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2096940_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2096940_18	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2096940_18	UniRef90	UniRef90_UPI001C37BD15	terminase family protein	NA
UHGV-2096940_18	eggNOG-mapper	742727.HMPREF9447_04827	Terminase-like family	NA
UHGV-2096940_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2096940_18	COG	COG5362	Phage terminase large subunit	NA
UHGV-2096940_18	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-2096940_21	eggNOG-mapper	742727.HMPREF9447_04829	NA	NA
UHGV-2096940_22	UniRef90	UniRef90_J9C707	Protein containing Carbohydrate-binding family V/XII domain protein	NA
UHGV-2096940_22	Structural annotation	PF21430	NA	NA
UHGV-2096940_23	PHROG	phrog_29	major head protein	head and packaging
UHGV-2096940_23	UniRef90	UniRef90_UPI001C3778B2	major capsid protein	NA
UHGV-2096940_23	Structural annotation	PF03864, MF_04133, NF041162, COG1659	NA	NA
UHGV-2096940_24	eggNOG-mapper	1121100.JCM6294_578	NA	NA
UHGV-2096940_24	Structural annotation	PF20449	NA	NA
UHGV-2096940_25	eggNOG-mapper	1121100.JCM6294_577	NA	NA
UHGV-2096940_25	Structural annotation	PF19586	NA	NA
UHGV-2096940_26	eggNOG-mapper	1268240.ATFI01000020_gene141	NA	NA
UHGV-2096940_27	eggNOG-mapper	742727.HMPREF9447_04835	NA	NA
UHGV-2096940_27	Structural annotation	PF06141	NA	NA
UHGV-2096940_29	eggNOG-mapper	742727.HMPREF9447_04837	NA	NA
UHGV-2096940_31	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-2096940_31	UniRef90	UniRef90_UPI000E48A8FD	tape measure protein	NA
UHGV-2096940_31	eggNOG-mapper	1121100.JCM6294_571	tape measure	NA
UHGV-2096940_31	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2096940_31	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2096940_32	PHROG	phrog_10156	NA	unknown function
UHGV-2096940_32	eggNOG-mapper	742727.HMPREF9447_04840	NA	NA
UHGV-2096940_33	PHROG	phrog_23063	NA	unknown function
UHGV-2096940_33	eggNOG-mapper	449673.BACSTE_02224	NA	NA
UHGV-2096940_35	Structural annotation	PF02368, PF07467, NF005261	NA	NA
UHGV-2096940_36	UniRef90	UniRef90_A0A412NPW1	OMP_b-brl domain-containing protein	NA
UHGV-2096940_36	eggNOG-mapper	880071.Fleli_0018	long-chain fatty acid transport protein	NA
UHGV-2096940_36	Pfam	PF13505	Outer membrane protein beta-barrel domain	OMP_b-brl
UHGV-2096940_36	COG	COG2067	Long-chain fatty acid transport protein	NA
UHGV-2096940_36	Structural annotation	PF13505, MF_00842, NF033755, COG3047	NA	NA
UHGV-2096940_37	eggNOG-mapper	742767.HMPREF9456_00918	NA	NA
UHGV-2096940_37	Structural annotation	PF13715, NF041245	NA	NA
UHGV-2096940_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2096940_38	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2096940_38	UniRef90	UniRef90_UPI000E52AA41	phage regulatory protein/antirepressor Ant	NA
UHGV-2096940_38	eggNOG-mapper	445970.ALIPUT_01646	NA	NA
UHGV-2096940_38	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2096940_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2096940_38	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2096940_38	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-2096940_40	eggNOG-mapper	742727.HMPREF9447_04845	NA	NA
UHGV-2096940_40	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2096940_41	PHROG	phrog_38044	NA	unknown function
UHGV-2096940_41	eggNOG-mapper	1121100.JCM6294_565	Phage minor structural protein	NA
UHGV-2096940_41	COG	COG4926	Phage-related protein	NA
UHGV-2096940_41	Structural annotation	PF14594, PF04862, PF18141, TIGR01665, NF038128, COG4926	NA	NA
UHGV-2096940_42	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-2096940_45	eggNOG-mapper	272559.BF9343_2359	NA	NA
UHGV-2096940_46	UniRef90	UniRef90_UPI000E53ECB8	phage holin family protein	NA
UHGV-2096940_46	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-2096940_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2096940_46	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-2096940_48	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2096940_48	PHROG	phrog_435	endolysin	lysis
UHGV-2096940_48	UniRef90	UniRef90_UPI0018997145	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2096940_48	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-2096940_48	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2096940_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2096940_48	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-2096940_49	Structural annotation	PF14607, MF_01372, NF038393	NA	NA
UHGV-2096940_50	Structural annotation	PF13385, PF17994	NA	NA
UHGV-2096940_52	PHROG	phrog_26448	NA	unknown function
UHGV-2096940_52	eggNOG-mapper	762984.HMPREF9445_00190	NA	NA
UHGV-2096940_52	Pfam	PF20647	NA	DUF6808
UHGV-2096940_52	Structural annotation	PF20647	NA	NA
UHGV-2096940_53	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-2096940_53	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-2096940_53	Structural annotation	PF08299, NF004688	NA	NA
UHGV-2096940_54	PHROG	phrog_16490	NA	unknown function
UHGV-2096940_54	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-2096940_54	eggNOG-mapper	762968.HMPREF9441_00555	NA	NA
UHGV-2096940_55	PHROG	phrog_31654	NA	unknown function
UHGV-2096940_55	eggNOG-mapper	762968.HMPREF9441_00554	NA	NA
UHGV-2096940_56	PHROG	phrog_28898	NA	unknown function
UHGV-2096940_56	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-2096940_56	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-2096940_56	Structural annotation	PF10781	NA	NA
UHGV-2096940_57	PHROG	phrog_34053	NA	unknown function
UHGV-2096940_58	PHROG	phrog_38431	NA	unknown function
UHGV-2096940_58	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-2096940_58	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-2096940_59	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-2096940_59	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-2096940_60	Structural annotation	PF11169	NA	NA
UHGV-2096940_61	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-2096940_61	Structural annotation	PF13384, TIGR04381	NA	NA
UHGV-2096940_62	Structural annotation	PF02699, MF_01354, NF005100, COG5475	NA	NA
UHGV-2096940_63	UniRef90	UniRef90_H2A0H1	Putative nuclease	NA
UHGV-2096940_63	eggNOG-mapper	213774.R9R2E1_9CAUD	HNH endonuclease	NA
UHGV-2096940_63	Structural annotation	TIGR01453	NA	NA
UHGV-2096940_65	PHROG	phrog_8684	NA	unknown function
UHGV-2096940_65	UniRef90	UniRef90_UPI001C016A5B	YopX family protein	NA
UHGV-2096940_65	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-2096940_65	Pfam	PF09643	YopX protein	YopX
UHGV-2096940_65	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2096940_65	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2096940_66	PHROG	phrog_874	NA	unknown function
UHGV-2096940_66	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-2096940_66	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2096940_67	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-2096940_69	PHROG	phrog_22725	NA	unknown function
UHGV-2096940_69	eggNOG-mapper	476272.RUMHYD_03319	NA	NA
UHGV-2096940_72	PHROG	phrog_12005	NA	unknown function
UHGV-2096940_72	Structural annotation	PF20204	NA	NA
UHGV-2096940_73	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2096940_73	PHROG	phrog_363	DNA methyltransferase	other
UHGV-2096940_73	UniRef90	UniRef90_UPI001E2B78BF	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2096940_73	eggNOG-mapper	1121098.HMPREF1534_01082	C-5 cytosine-specific DNA methylase	NA
UHGV-2096940_73	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2096940_73	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2096940_73	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2096940_73	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2096940_73	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2096940_76	PHROG	phrog_35728	NA	unknown function
UHGV-2096940_76	eggNOG-mapper	585502.HMPREF0645_2611	NA	NA
UHGV-2096940_77	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2096940_77	PHROG	phrog_9438	anti-repressor	transcription regulation
UHGV-2096940_77	UniRef90	UniRef90_A0A374URW2	KilA-N domain-containing protein	NA
UHGV-2096940_77	eggNOG-mapper	1236504.HMPREF2132_11510	BRO family, N-terminal domain	NA
UHGV-2096940_77	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-2096940_77	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2096940_77	COG	COG3617	Prophage antirepressor	NA
UHGV-2096940_77	Structural annotation	PF03374, COG3645	NA	NA
UHGV-2096940_78	UniRef90	UniRef90_UPI001C378A79	antA/AntB antirepressor family protein	NA
UHGV-2096940_78	eggNOG-mapper	1235803.C825_02646	BRO family, N-terminal domain	NA
UHGV-2096940_78	COG	COG3617	Prophage antirepressor	NA
UHGV-2096940_78	Structural annotation	PF08346, COG3561	NA	NA
UHGV-2096940_79	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2096940_79	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2096940_79	UniRef90	UniRef90_UPI000E48ADF6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2096940_79	eggNOG-mapper	435590.BVU_2854	Endodeoxyribonuclease RusA	NA
UHGV-2096940_79	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2096940_79	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2096940_81	eggNOG-mapper	411901.BACCAC_02347	NA	NA
UHGV-2096940_83	AcrCatalog	cluster_25385	NA	NA
UHGV-2096940_84	PHROG	phrog_19572	NA	unknown function
UHGV-2096940_84	UniRef90	UniRef90_UPI000E46A408	NA	NA
UHGV-2096940_84	eggNOG-mapper	1227276.HMPREF9148_02498	COG NOG14445 non supervised orthologous group	NA
UHGV-2096940_84	Pfam	PF14902	NA	DUF4494
UHGV-2096940_84	Structural annotation	PF14902, COG2157	NA	NA
UHGV-2096940_85	PHROG	phrog_36980	NA	unknown function
UHGV-2096940_85	eggNOG-mapper	1268240.ATFI01000008_gene2556	NA	NA
UHGV-2096940_86	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2096940_86	UniRef90	UniRef90_A0A414Q850	YqaJ domain-containing protein	NA
UHGV-2096940_86	eggNOG-mapper	1121100.JCM6294_520	YqaJ-like viral recombinase domain	NA
UHGV-2096940_86	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2096940_86	Structural annotation	TIGR03033, COG5377	NA	NA
UHGV-2096940_87	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2096940_87	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2096940_87	UniRef90	UniRef90_A0A414Q837	Recombinase RecT	NA
UHGV-2096940_87	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-2096940_87	Pfam	PF03837	RecT family	RecT
UHGV-2096940_87	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2096940_87	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2096940_87	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2096940_89	PHROG	phrog_15773	NA	unknown function
UHGV-2096940_89	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2096940_90	PHROG	phrog_11581	NA	unknown function
UHGV-2096940_90	eggNOG-mapper	457424.BFAG_02391	NA	NA
UHGV-2096940_91	PHROG	phrog_11581	NA	unknown function
UHGV-2096940_91	eggNOG-mapper	470145.BACCOP_01179	NA	NA
UHGV-2096940_93	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-2096940_93	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-2096940_94	eggNOG-mapper	1268240.ATFI01000007_gene444	NA	NA
UHGV-2096940_95	UniRef90	UniRef90_UPI000E54150D	helix-turn-helix domain-containing protein	NA
UHGV-2096940_95	eggNOG-mapper	742727.HMPREF9447_04898	Helix-turn-helix domain	NA
UHGV-2096940_95	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2096940_95	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2096940_95	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2096940_97	eggNOG-mapper	411477.PARMER_02101	NA	NA
UHGV-2096940_102	UniRef90	UniRef90_A0A7K1X815	HTH cro/C1-type domain-containing protein	NA
UHGV-2096940_102	eggNOG-mapper	742767.HMPREF9456_02035	Transcriptional regulator	NA
UHGV-2096940_102	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2096940_102	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2096940_104	eggNOG-mapper	742727.HMPREF9447_04901	NA	NA
UHGV-2096940_105	UniRef90	UniRef90_A0A174RS90	Transposase family protein	NA
UHGV-2096940_105	eggNOG-mapper	435590.BVU_1691	NA	NA
UHGV-2096940_105	COG	COG3464	Transposase	NA
UHGV-2096940_105	Structural annotation	PF20020, COG3436	NA	NA