UHGV-2097065

Genome information

Genome length 31,805 bps

CDS count 53

Completeness 82.52% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-2097065
vOTU ID	vOTU-038624
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029499\|Ga0244789_100449\|provirus_3_31807
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.83
Jumbo phage	No

Genome content
Genome length	31,805 bps
GC content	41.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.76%
Average CDS length	554.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2097065_2	PHROG	phrog_538	minor tail protein	tail
UHGV-2097065_2	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2097065_2	eggNOG-mapper	742723.HMPREF9477_00895	NA	NA
UHGV-2097065_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2097065_2	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2097065_3	eggNOG-mapper	742723.HMPREF9477_00896	NA	NA
UHGV-2097065_3	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2097065_4	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2097065_4	UniRef90	UniRef90_S2ZLI7	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-2097065_4	eggNOG-mapper	742723.HMPREF9477_00897	phage tail tape measure protein	NA
UHGV-2097065_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2097065_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2097065_4	COG	COG4487	NA	NA
UHGV-2097065_4	Structural annotation	PF10145, TIGR01760, NF011901	NA	NA
UHGV-2097065_5	PHROG	phrog_706	NA	unknown function
UHGV-2097065_5	UniRef90	UniRef90_UPI001CD5259B	bacteriophage Gp15 family protein	NA
UHGV-2097065_5	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-2097065_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2097065_5	Structural annotation	PF06854	NA	NA
UHGV-2097065_6	PHROG	phrog_4450	NA	unknown function
UHGV-2097065_6	UniRef90	UniRef90_UPI0018986D97	AP endonuclease	NA
UHGV-2097065_6	eggNOG-mapper	573061.Clocel_3535	NA	NA
UHGV-2097065_6	Pfam	PF20378	NA	DUF6673
UHGV-2097065_6	Structural annotation	PF20378	NA	NA
UHGV-2097065_7	PHROG	phrog_3099	NA	unknown function
UHGV-2097065_7	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-2097065_7	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-2097065_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2097065_8	PHROG	phrog_3266	tail completion	connector
UHGV-2097065_8	UniRef90	UniRef90_A0A2N2DTS1	Chloramphenicol resistance protein	NA
UHGV-2097065_8	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-2097065_8	Structural annotation	PF12691	NA	NA
UHGV-2097065_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2097065_9	UniRef90	UniRef90_UPI00129D998E	minor capsid protein	NA
UHGV-2097065_9	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-2097065_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2097065_9	Structural annotation	PF11114	NA	NA
UHGV-2097065_10	PHROG	phrog_3366	NA	unknown function
UHGV-2097065_10	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-2097065_10	Pfam	PF20536	NA	DUF6751
UHGV-2097065_10	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2097065_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2097065_11	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-2097065_12	UniRef90	UniRef90_UPI001C8DA5AC	head fiber protein	NA
UHGV-2097065_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-2097065_13	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-2097065_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2097065_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2097065_14	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-2097065_14	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-2097065_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2097065_14	Structural annotation	PF06810	NA	NA
UHGV-2097065_15	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2097065_15	Structural annotation	NF040910	NA	NA
UHGV-2097065_18	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-2097065_19	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-2097065_19	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-2097065_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2097065_20	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-2097065_20	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-2097065_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2097065_20	COG	COG2369	NA	NA
UHGV-2097065_20	Structural annotation	PF06152	NA	NA
UHGV-2097065_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-2097065_21	UniRef90	UniRef90_A7B3T1	Putative phage minor capsid protein	NA
UHGV-2097065_21	eggNOG-mapper	411470.RUMGNA_02212	NA	NA
UHGV-2097065_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2097065_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2097065_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2097065_22	UniRef90	UniRef90_A7B3T0	Phage terminase, large subunit, PBSX family	NA
UHGV-2097065_22	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-2097065_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2097065_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-2097065_22	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2097065_23	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2097065_23	UniRef90	UniRef90_UPI001D05A70C	transposase	NA
UHGV-2097065_23	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-2097065_23	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-2097065_23	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2097065_23	Structural annotation	PF07141	NA	NA
UHGV-2097065_26	PHROG	phrog_8680	NA	unknown function
UHGV-2097065_26	UniRef90	UniRef90_UPI001D046250	NA	NA
UHGV-2097065_26	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2097065_26	Pfam	PF14386	NA	DUF4417
UHGV-2097065_26	Structural annotation	PF14386	NA	NA
UHGV-2097065_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2097065_27	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-2097065_27	Structural annotation	PF02996	NA	NA
UHGV-2097065_29	PHROG	phrog_15198	NA	unknown function
UHGV-2097065_29	UniRef90	UniRef90_UPI001185FC09	NA	NA
UHGV-2097065_29	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-2097065_29	Pfam	PF04448	NA	DUF551
UHGV-2097065_33	PHROG	phrog_10714	NA	unknown function
UHGV-2097065_33	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-2097065_33	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-2097065_36	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2097065_36	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2097065_36	UniRef90	UniRef90_S2ZLG6	IstB_IS21 domain-containing protein	NA
UHGV-2097065_36	eggNOG-mapper	476272.RUMHYD_03359	DNA-dependent DNA replication	NA
UHGV-2097065_36	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2097065_36	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2097065_36	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-2097065_37	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2097065_37	UniRef90	UniRef90_A0A371AZY0	Phage_rep_org_N domain-containing protein	NA
UHGV-2097065_37	eggNOG-mapper	1291050.JAGE01000002_gene3381	Phage replisome organizer, N-terminal domain protein	NA
UHGV-2097065_37	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2097065_37	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2097065_37	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2097065_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2097065_38	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2097065_38	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-2097065_38	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-2097065_38	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2097065_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2097065_38	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2097065_39	PHROG	phrog_7566	NA	unknown function
UHGV-2097065_39	UniRef90	UniRef90_A0A3A5TWB4	Phosphoenolpyruvate carboxykinase	NA
UHGV-2097065_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2097065_40	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-2097065_40	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2097065_41	PHROG	phrog_11717	NA	unknown function
UHGV-2097065_41	eggNOG-mapper	1399942.U3PCT3_9CAUD	NA	NA
UHGV-2097065_41	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-2097065_44	PHROG	phrog_7964	NA	unknown function
UHGV-2097065_44	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-2097065_44	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-2097065_44	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-2097065_44	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-2097065_44	Structural annotation	NF040481, COG2171	NA	NA
UHGV-2097065_47	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2097065_47	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2097065_47	UniRef90	UniRef90_UPI001C3B87F0	Phage antirepressor	NA
UHGV-2097065_47	eggNOG-mapper	1232452.BAIB02000007_gene1603	BRO family, N-terminal domain	NA
UHGV-2097065_47	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2097065_47	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2097065_47	COG	COG3617	Prophage antirepressor	NA
UHGV-2097065_47	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-2097065_48	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-2097065_50	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2097065_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2097065_50	UniRef90	UniRef90_UPI001D04C7E1	helix-turn-helix domain-containing protein	NA
UHGV-2097065_50	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-2097065_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2097065_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2097065_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2097065_52	PHROG	phrog_5319	outer membrane protein	other
UHGV-2097065_52	UniRef90	UniRef90_UPI001C0F0962	toxin regulator	NA
UHGV-2097065_52	eggNOG-mapper	1033734.CAET01000065_gene2149	NA	NA
UHGV-2097065_52	Structural annotation	PF03843, MF_01959, TIGR00752, COG3065	NA	NA
UHGV-2097065_53	KOfam	K14059	int; integrase	NA
UHGV-2097065_53	PHROG	phrog_1	integrase	integration and excision
UHGV-2097065_53	UniRef90	UniRef90_A0A3A5TEW4	Integrase	NA
UHGV-2097065_53	eggNOG-mapper	1232453.BAIF02000010_gene3323	Phage integrase family	NA
UHGV-2097065_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2097065_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2097065_53	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA