UHGV-2098229

Genome information

Genome length 42,885 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-2098229
vOTU ID	vOTU-014519
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029505\|Ga0244823_100195\|provirus_54047_103277
BioSample	SAMEA3708674
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.31
Jumbo phage	No

Genome content
Genome length	42,885 bps
GC content	42.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.86%
Average CDS length	626.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2098229_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2098229_1	PHROG	phrog_670	endolysin	lysis
UHGV-2098229_1	UniRef90	UniRef90_UPI00192054C9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2098229_1	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-2098229_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2098229_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2098229_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2098229_2	PHROG	phrog_443	holin	lysis
UHGV-2098229_2	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-2098229_2	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-2098229_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2098229_2	Structural annotation	PF16945	NA	NA
UHGV-2098229_3	PHROG	phrog_937	hemolysin	other
UHGV-2098229_4	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2098229_4	Structural annotation	NF040910	NA	NA
UHGV-2098229_5	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-2098229_6	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-2098229_7	PHROG	phrog_17196	kinase	other
UHGV-2098229_7	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-2098229_7	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-2098229_8	PHROG	phrog_18190	NA	unknown function
UHGV-2098229_8	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-2098229_8	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-2098229_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2098229_8	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2098229_9	PHROG	phrog_1194	NA	unknown function
UHGV-2098229_9	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-2098229_9	Pfam	PF20458	NA	DUF6711
UHGV-2098229_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2098229_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2098229_10	UniRef90	UniRef90_A0A448W7L1	Phage-related protein	NA
UHGV-2098229_10	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-2098229_10	COG	COG5283	Phage-related tail protein	NA
UHGV-2098229_11	PHROG	phrog_706	NA	unknown function
UHGV-2098229_11	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-2098229_11	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-2098229_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2098229_11	Structural annotation	PF06854	NA	NA
UHGV-2098229_12	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-2098229_12	Structural annotation	PF10666	NA	NA
UHGV-2098229_13	PHROG	phrog_3099	NA	unknown function
UHGV-2098229_13	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-2098229_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2098229_14	PHROG	phrog_3266	tail completion	connector
UHGV-2098229_14	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-2098229_14	Structural annotation	PF12691	NA	NA
UHGV-2098229_15	PHROG	phrog_3366	NA	unknown function
UHGV-2098229_15	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-2098229_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2098229_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2098229_16	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2098229_16	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2098229_17	PHROG	phrog_247	major head protein	head and packaging
UHGV-2098229_17	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-2098229_17	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-2098229_17	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-2098229_17	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-2098229_17	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-2098229_18	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-2098229_19	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2098229_19	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-2098229_19	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-2098229_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2098229_21	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-2098229_21	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-2098229_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2098229_21	COG	COG2369	NA	NA
UHGV-2098229_21	Structural annotation	PF06152	NA	NA
UHGV-2098229_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2098229_22	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-2098229_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2098229_22	Structural annotation	PF11114	NA	NA
UHGV-2098229_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-2098229_23	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-2098229_23	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-2098229_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2098229_24	PHROG	phrog_1233	NA	unknown function
UHGV-2098229_24	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-2098229_24	Structural annotation	PF13058	NA	NA
UHGV-2098229_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2098229_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2098229_25	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-2098229_25	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2098229_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2098229_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2098229_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2098229_25	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2098229_26	PHROG	phrog_33130	NA	unknown function
UHGV-2098229_26	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-2098229_28	PHROG	phrog_8680	NA	unknown function
UHGV-2098229_28	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-2098229_28	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2098229_28	Pfam	PF14386	NA	DUF4417
UHGV-2098229_28	Structural annotation	PF14386	NA	NA
UHGV-2098229_30	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2098229_30	PHROG	phrog_3502	NA	unknown function
UHGV-2098229_30	UniRef90	UniRef90_A0A374HT58	LexA_DNA_bind domain-containing protein	NA
UHGV-2098229_30	eggNOG-mapper	742733.HMPREF9469_01830	LexA DNA binding domain	NA
UHGV-2098229_30	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-2098229_30	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2098229_30	Structural annotation	PF01726, MF_00732, NF000243, COG1321	NA	NA
UHGV-2098229_31	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-2098229_32	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2098229_32	PHROG	phrog_1	integrase	integration and excision
UHGV-2098229_32	UniRef90	UniRef90_UPI001C034698	tyrosine-type recombinase/integrase	NA
UHGV-2098229_32	eggNOG-mapper	610130.Closa_0719	Belongs to the 'phage' integrase family	NA
UHGV-2098229_32	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2098229_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2098229_32	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2098229_32	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2098229_33	eggNOG-mapper	469596.HMPREF9488_02297	NA	NA
UHGV-2098229_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2098229_34	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2098229_34	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-2098229_34	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-2098229_34	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2098229_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2098229_34	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2098229_34	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-2098229_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2098229_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2098229_35	UniRef90	UniRef90_A0A3R6CGB9	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2098229_35	eggNOG-mapper	397291.C804_00950	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2098229_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2098229_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2098229_35	Structural annotation	PF01507, MF_00063, NF010367, COG0175	NA	NA
UHGV-2098229_37	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2098229_37	UniRef90	UniRef90_A0A6L6XK67	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2098229_37	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-2098229_37	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2098229_37	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-2098229_38	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-2098229_41	PHROG	phrog_8684	NA	unknown function
UHGV-2098229_41	UniRef90	UniRef90_A0A416ZXS5	YopX domain-containing protein	NA
UHGV-2098229_41	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-2098229_41	Pfam	PF09643	YopX protein	YopX
UHGV-2098229_41	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2098229_41	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2098229_42	PHROG	phrog_7711	NA	unknown function
UHGV-2098229_42	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-2098229_42	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-2098229_43	UniRef90	UniRef90_A0A173SA50	NA	NA
UHGV-2098229_46	PHROG	phrog_16304	NA	unknown function
UHGV-2098229_46	UniRef90	UniRef90_A0A173S8B3	NA	NA
UHGV-2098229_46	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-2098229_46	Pfam	PF19808	NA	DUF6291
UHGV-2098229_46	Structural annotation	PF19808	NA	NA
UHGV-2098229_47	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2098229_47	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2098229_47	UniRef90	UniRef90_A0A6N3H631	Endodeoxyribonuclease RusA	NA
UHGV-2098229_47	eggNOG-mapper	1118057.CAGX01000020_gene1647	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2098229_47	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2098229_48	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2098229_48	UniRef90	UniRef90_UPI0018A6ABED	Rha family transcriptional regulator	NA
UHGV-2098229_48	eggNOG-mapper	632245.CLP_2719	ORF6C domain	NA
UHGV-2098229_48	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2098229_48	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2098229_48	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2098229_48	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2098229_48	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-2098229_49	PHROG	phrog_7566	NA	unknown function
UHGV-2098229_49	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-2098229_50	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2098229_50	UniRef90	UniRef90_D4L3P7	NA	NA
UHGV-2098229_50	eggNOG-mapper	1304866.K413DRAFT_3016	NA	NA
UHGV-2098229_50	Pfam	PF12684	NA	DUF3799
UHGV-2098229_50	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2098229_50	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-2098229_51	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2098229_51	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-2098229_51	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-2098229_51	Pfam	PF03837	RecT family	RecT
UHGV-2098229_51	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2098229_52	PHROG	phrog_1499	NA	unknown function
UHGV-2098229_52	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-2098229_52	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-2098229_52	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-2098229_52	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-2098229_56	UniRef90	UniRef90_UPI001C033D96	helix-turn-helix domain-containing protein	NA
UHGV-2098229_56	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-2098229_58	UniRef90	UniRef90_A0A0M6WGZ2	HTH_7 domain-containing protein	NA
UHGV-2098229_58	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-2098229_58	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-2098229_58	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2098229_59	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-2098229_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2098229_59	UniRef90	UniRef90_R5ZAU1	Conserved domain protein	NA
UHGV-2098229_59	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-2098229_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2098229_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2098229_59	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2098229_60	PHROG	phrog_87	metallo-protease	other
UHGV-2098229_60	UniRef90	UniRef90_A0A1Y4RLL8	Peptidase_M78 domain-containing protein	NA
UHGV-2098229_60	eggNOG-mapper	1347392.CCEZ01000005_gene1204	Zn peptidase	NA
UHGV-2098229_60	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2098229_60	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2098229_60	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2098229_61	KOfam	K07448	mrr; restriction system protein	NA
UHGV-2098229_61	PHROG	phrog_19856	NA	unknown function
UHGV-2098229_61	eggNOG-mapper	411459.RUMOBE_01428	Restriction endonuclease	NA
UHGV-2098229_61	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2098229_61	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-2098229_61	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-2098229_62	Pfam	PF00227	Proteasome subunit	Proteasome
UHGV-2098229_62	Structural annotation	PF00227, MF_02113_A, TIGR03634, COG0638	NA	NA
UHGV-2098229_64	KOfam	K14059	int; integrase	NA
UHGV-2098229_64	PHROG	phrog_1	integrase	integration and excision
UHGV-2098229_64	UniRef90	UniRef90_R6ZYN0	Site-specific recombinase phage integrase family	NA
UHGV-2098229_64	eggNOG-mapper	1235793.C809_01886	Phage integrase family	NA
UHGV-2098229_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2098229_64	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2098229_64	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA