UHGV-2098394

Genome information

Genome length 33,723 bps

CDS count 54

Completeness 98.53% (high-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-2098394
vOTU ID	vOTU-013837
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029519\|Ga0244840_100098\|provirus_27538_67110
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.53% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.35
Jumbo phage	No

Genome content
Genome length	33,723 bps
GC content	40.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	88.38%
Average CDS length	556.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2098394_1	PHROG	phrog_28785	NA	unknown function
UHGV-2098394_1	UniRef90	UniRef90_A0A3E5GT92	Carboxypeptidase regulatory-like domain-containing protein	NA
UHGV-2098394_1	eggNOG-mapper	742765.HMPREF9457_03361	Peptidoglycan binding domain protein	NA
UHGV-2098394_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2098394_1	Structural annotation	PF13620, TIGR02870, TIGR04134, COG2351	NA	NA
UHGV-2098394_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2098394_2	PHROG	phrog_435	endolysin	lysis
UHGV-2098394_2	UniRef90	UniRef90_A0A1C5SUS3	N-acetylmuramoyl-L-alanine amidase CwlD	NA
UHGV-2098394_2	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-2098394_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2098394_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2098394_2	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-2098394_4	PHROG	phrog_1129	holin	lysis
UHGV-2098394_4	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-2098394_4	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2098394_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2098394_4	Structural annotation	PF06946	NA	NA
UHGV-2098394_5	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-2098394_5	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-2098394_7	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-2098394_9	eggNOG-mapper	1280698.AUJS01000007_gene1053	NA	NA
UHGV-2098394_10	PHROG	phrog_12931	NA	unknown function
UHGV-2098394_10	eggNOG-mapper	742765.HMPREF9457_03370	NA	NA
UHGV-2098394_11	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-2098394_11	PHROG	phrog_1	integrase	integration and excision
UHGV-2098394_11	UniRef90	UniRef90_A0A1C5SV17	Tyrosine recombinase XerD	NA
UHGV-2098394_11	eggNOG-mapper	411461.DORFOR_00731	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2098394_11	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2098394_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2098394_11	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2098394_11	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2098394_12	PHROG	phrog_25635	NA	unknown function
UHGV-2098394_12	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-2098394_12	Structural annotation	PF20747	NA	NA
UHGV-2098394_13	PHROG	phrog_538	minor tail protein	tail
UHGV-2098394_13	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2098394_13	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-2098394_13	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2098394_13	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2098394_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2098394_14	UniRef90	UniRef90_A0A174L0T5	Phage-related protein	NA
UHGV-2098394_14	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-2098394_14	COG	COG1511	NA	NA
UHGV-2098394_14	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-2098394_15	PHROG	phrog_1633	NA	unknown function
UHGV-2098394_15	UniRef90	UniRef90_UPI00157064A0	NA	NA
UHGV-2098394_15	eggNOG-mapper	1280698.AUJS01000007_gene1046	NA	NA
UHGV-2098394_15	Pfam	PF17318	NA	DUF5361
UHGV-2098394_15	Structural annotation	PF17318	NA	NA
UHGV-2098394_16	PHROG	phrog_1526	NA	unknown function
UHGV-2098394_16	UniRef90	UniRef90_A0A1Q8EF45	NA	NA
UHGV-2098394_16	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-2098394_17	PHROG	phrog_117	major tail protein	tail
UHGV-2098394_17	UniRef90	UniRef90_UPI001F18A06D	phage tail protein	NA
UHGV-2098394_17	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-2098394_17	COG	COG5492	NA	NA
UHGV-2098394_17	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2098394_18	PHROG	phrog_123	tail terminator	connector
UHGV-2098394_18	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-2098394_18	Structural annotation	PF06141	NA	NA
UHGV-2098394_19	PHROG	phrog_387	neck protein	connector
UHGV-2098394_19	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-2098394_20	PHROG	phrog_501	head closure Hc1	connector
UHGV-2098394_20	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-2098394_20	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2098394_21	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2098394_21	UniRef90	UniRef90_UPI0019617F49	phage Gp19/Gp15/Gp42 family protein	NA
UHGV-2098394_21	eggNOG-mapper	1280698.AUJS01000007_gene1040	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2098394_21	Pfam	PF09355	NA	Phage_Gp19
UHGV-2098394_21	Structural annotation	PF09355	NA	NA
UHGV-2098394_22	PHROG	phrog_36603	NA	unknown function
UHGV-2098394_23	PHROG	phrog_32396	NA	unknown function
UHGV-2098394_23	UniRef90	UniRef90_UPI001961D35B	phage major capsid protein	NA
UHGV-2098394_23	eggNOG-mapper	1280698.AUJS01000007_gene1038	Phage capsid family	NA
UHGV-2098394_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2098394_24	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-2098394_24	UniRef90	UniRef90_A0A0X8USY7	Phage scaffold protein	NA
UHGV-2098394_24	eggNOG-mapper	1280698.AUJS01000007_gene1037	NA	NA
UHGV-2098394_24	Pfam	PF14265	NA	DUF4355
UHGV-2098394_24	Structural annotation	PF14265	NA	NA
UHGV-2098394_25	PHROG	phrog_17688	NA	unknown function
UHGV-2098394_25	UniRef90	UniRef90_R6SFU1	Putative phage terminase large subunit	NA
UHGV-2098394_25	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-2098394_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2098394_25	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2098394_26	PHROG	phrog_1865	NA	unknown function
UHGV-2098394_26	Structural annotation	PF07073, MF_00436, NF008636, COG4568	NA	NA
UHGV-2098394_27	PHROG	phrog_37230	NA	unknown function
UHGV-2098394_28	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-2098394_28	UniRef90	UniRef90_UPI00156EC2C0	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2098394_28	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-2098394_28	COG	COG2369	NA	NA
UHGV-2098394_29	PHROG	phrog_104	portal protein	head and packaging
UHGV-2098394_29	UniRef90	UniRef90_UPI001A9C29A4	phage portal protein	NA
UHGV-2098394_29	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2098394_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2098394_30	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2098394_30	UniRef90	UniRef90_R6S8U5	HNH endonuclease	NA
UHGV-2098394_30	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-2098394_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2098394_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2098394_30	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2098394_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2098394_31	UniRef90	UniRef90_R6S8T9	Sigma70_r4 domain-containing protein	NA
UHGV-2098394_31	eggNOG-mapper	1280698.AUJS01000007_gene1031	NA	NA
UHGV-2098394_31	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2098394_31	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-2098394_32	PHROG	phrog_7024	NA	unknown function
UHGV-2098394_32	eggNOG-mapper	693746.OBV_41700	NA	NA
UHGV-2098394_33	PHROG	phrog_38110	NA	unknown function
UHGV-2098394_34	PHROG	phrog_31991	NA	unknown function
UHGV-2098394_35	PHROG	phrog_32748	NA	unknown function
UHGV-2098394_35	eggNOG-mapper	411461.DORFOR_01147	COG NOG28949 non supervised orthologous group	NA
UHGV-2098394_35	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-2098394_38	PHROG	phrog_26445	NA	unknown function
UHGV-2098394_38	UniRef90	UniRef90_A0A414QER8	Sigma70_r4_2 domain-containing protein	NA
UHGV-2098394_38	eggNOG-mapper	742765.HMPREF9457_02112	NA	NA
UHGV-2098394_38	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2098394_39	PHROG	phrog_15077	NA	unknown function
UHGV-2098394_39	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-2098394_39	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-2098394_39	Structural annotation	NF038070	NA	NA
UHGV-2098394_40	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2098394_40	UniRef90	UniRef90_R6S5E8	NA	NA
UHGV-2098394_40	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-2098394_40	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2098394_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2098394_40	Structural annotation	PF14297	NA	NA
UHGV-2098394_41	PHROG	phrog_1029	NA	unknown function
UHGV-2098394_41	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-2098394_41	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2098394_42	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2098394_42	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-2098394_43	PHROG	phrog_7566	NA	unknown function
UHGV-2098394_43	UniRef90	UniRef90_A0A414QES0	Phosphoenolpyruvate carboxykinase	NA
UHGV-2098394_43	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-2098394_44	PHROG	phrog_32342	NA	unknown function
UHGV-2098394_48	PHROG	phrog_32168	NA	unknown function
UHGV-2098394_48	Structural annotation	PF13248, MF_00788, NF041910, COG1552	NA	NA
UHGV-2098394_49	Structural annotation	PF12729	NA	NA
UHGV-2098394_51	UniRef90	UniRef90_R6SLX6	HTH cro/C1-type domain-containing protein	NA
UHGV-2098394_51	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-2098394_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2098394_51	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-2098394_52	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2098394_52	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2098394_52	UniRef90	UniRef90_R6S8R2	LexA repressor	NA
UHGV-2098394_52	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2098394_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2098394_52	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2098394_52	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2098394_52	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-2098394_53	PHROG	phrog_1847	NA	unknown function
UHGV-2098394_53	UniRef90	UniRef90_UPI00040ED02D	NA	NA
UHGV-2098394_53	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-2098394_53	Pfam	PF13250	NA	DUF4041
UHGV-2098394_53	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2098394_53	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-2098394_53	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-2098394_54	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2098394_54	PHROG	phrog_95	integrase	integration and excision
UHGV-2098394_54	UniRef90	UniRef90_A0A3E5GSR5	Recombinase family protein	NA
UHGV-2098394_54	eggNOG-mapper	742765.HMPREF9457_02089	Resolvase, N terminal domain	NA
UHGV-2098394_54	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2098394_54	Pfam	PF07508	Recombinase	Recombinase
UHGV-2098394_54	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2098394_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2098394_54	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA