UHGV-2098706

Genome information

Genome length 37,056 bps

CDS count 62

Completeness 63.88% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-2098706
vOTU ID	vOTU-024605
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029488\|Ga0244072_100754\|provirus_1_37056
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.96
Jumbo phage	No

Genome content
Genome length	37,056 bps
GC content	36.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	94.75%
Average CDS length	568.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2098706_2	PHROG	phrog_544	major head protein	head and packaging
UHGV-2098706_2	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-2098706_2	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-2098706_2	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2098706_2	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2098706_3	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-2098706_3	Structural annotation	PF21169	NA	NA
UHGV-2098706_4	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-2098706_4	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2098706_5	PHROG	phrog_4105	NA	unknown function
UHGV-2098706_5	eggNOG-mapper	97139.C824_05951	NA	NA
UHGV-2098706_6	PHROG	phrog_1129	holin	lysis
UHGV-2098706_6	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-2098706_6	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2098706_6	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2098706_6	Structural annotation	PF06946	NA	NA
UHGV-2098706_7	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-2098706_7	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2098706_8	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-2098706_9	Structural annotation	PF05657	NA	NA
UHGV-2098706_10	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-2098706_10	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-2098706_11	PHROG	phrog_36112	NA	unknown function
UHGV-2098706_11	eggNOG-mapper	476272.RUMHYD_01969	NA	NA
UHGV-2098706_11	Structural annotation	PF16478	NA	NA
UHGV-2098706_13	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2098706_13	PHROG	phrog_670	endolysin	lysis
UHGV-2098706_13	UniRef90	UniRef90_A0A352SK06	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2098706_13	eggNOG-mapper	1042156.CXIVA_01560	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-2098706_13	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2098706_13	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2098706_13	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-2098706_14	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-2098706_14	PHROG	phrog_28918	NA	unknown function
UHGV-2098706_14	UniRef90	UniRef90_UPI001D06F8E3	methyl-accepting chemotaxis protein	NA
UHGV-2098706_14	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-2098706_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2098706_15	UniRef90	UniRef90_R9KPL7	BIG2 domain-containing protein	NA
UHGV-2098706_15	eggNOG-mapper	411490.ANACAC_02628	Bacterial Ig-like domain 2	NA
UHGV-2098706_15	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2098706_15	Structural annotation	PF02368, COG5492	NA	NA
UHGV-2098706_17	PHROG	phrog_1194	NA	unknown function
UHGV-2098706_17	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-2098706_17	Pfam	PF20458	NA	DUF6711
UHGV-2098706_17	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-2098706_18	PHROG	phrog_18190	NA	unknown function
UHGV-2098706_18	UniRef90	UniRef90_A0A3A8WLR6	Peptidase S74 domain-containing protein	NA
UHGV-2098706_18	eggNOG-mapper	1298920.KI911353_gene2679	NA	NA
UHGV-2098706_18	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2098706_18	Structural annotation	PF05113, NF033848, COG4379	NA	NA
UHGV-2098706_19	PHROG	phrog_2566	NA	unknown function
UHGV-2098706_20	PHROG	phrog_17196	kinase	other
UHGV-2098706_20	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-2098706_20	Structural annotation	PF13619, PF17577, PF19537, COG3536	NA	NA
UHGV-2098706_21	eggNOG-mapper	610130.Closa_0760	NA	NA
UHGV-2098706_22	Structural annotation	NF040910	NA	NA
UHGV-2098706_24	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2098706_24	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2098706_24	UniRef90	UniRef90_A0A414QML2	XRE family transcriptional regulator	NA
UHGV-2098706_24	eggNOG-mapper	397290.C810_01441	Helix-turn-helix XRE-family like proteins	NA
UHGV-2098706_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2098706_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2098706_24	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2098706_26	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-2098706_26	UniRef90	UniRef90_A0A173RHP1	ORF6C domain	NA
UHGV-2098706_26	eggNOG-mapper	476272.RUMHYD_03311	ORF6C domain	NA
UHGV-2098706_26	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2098706_26	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2098706_26	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2098706_26	Structural annotation	PF10552, PF10543, TIGR02681, COG3943	NA	NA
UHGV-2098706_30	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2098706_30	PHROG	phrog_4433	NA	unknown function
UHGV-2098706_30	UniRef90	UniRef90_A0A1C6I166	Collagen triple helix repeat (20 copies)	NA
UHGV-2098706_30	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-2098706_30	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2098706_30	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2098706_33	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-2098706_33	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-2098706_33	UniRef90	UniRef90_A0A011UJY5	NA	NA
UHGV-2098706_33	eggNOG-mapper	1454004.AW11_02382	NA	NA
UHGV-2098706_33	Pfam	PF12684	NA	DUF3799
UHGV-2098706_33	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2098706_33	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-2098706_35	PHROG	phrog_3657	NA	unknown function
UHGV-2098706_35	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-2098706_36	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2098706_36	UniRef90	UniRef90_UPI001F28F4A1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2098706_36	eggNOG-mapper	1567013.A0A0A7RTR1_9CAUD	magnesium ion binding	NA
UHGV-2098706_36	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2098706_37	KOfam	K06940	NA	NA
UHGV-2098706_37	PHROG	phrog_32498	NA	unknown function
UHGV-2098706_37	UniRef90	UniRef90_A0A173SAY4	Flagellin N-methylase	NA
UHGV-2098706_37	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-2098706_37	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-2098706_38	PHROG	phrog_25456	NA	unknown function
UHGV-2098706_41	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2098706_41	UniRef90	UniRef90_A0A3D5WJX6	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2098706_41	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-2098706_41	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2098706_41	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-2098706_43	PHROG	phrog_8684	NA	unknown function
UHGV-2098706_43	UniRef90	UniRef90_A0A3R6DZN9	YopX domain-containing protein	NA
UHGV-2098706_43	eggNOG-mapper	742740.HMPREF9474_03496	YopX protein	NA
UHGV-2098706_43	Pfam	PF09643	YopX protein	YopX
UHGV-2098706_43	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2098706_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2098706_44	UniRef90	UniRef90_UPI001D005DC4	NA	NA
UHGV-2098706_44	eggNOG-mapper	411473.RUMCAL_00272	NA	NA
UHGV-2098706_44	Pfam	PF07866	NA	DUF1653
UHGV-2098706_44	COG	COG4728	NA	NA
UHGV-2098706_44	Structural annotation	PF07866, COG4728	NA	NA
UHGV-2098706_48	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2098706_48	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2098706_48	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-2098706_48	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-2098706_48	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2098706_48	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2098706_48	COG	COG0863	DNA modification methylase	NA
UHGV-2098706_48	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2098706_49	eggNOG-mapper	1235799.C818_03894	helicase C-terminal domain protein	NA
UHGV-2098706_49	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2098706_50	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-2098706_50	UniRef90	UniRef90_A0A2W1LTU7	Replication protein	NA
UHGV-2098706_50	eggNOG-mapper	1231057.AMGD01000018_gene3636	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-2098706_50	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-2098706_50	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-2098706_50	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2098706_50	Structural annotation	PF09524, PF04492, TIGR02220, TIGR01714	NA	NA
UHGV-2098706_51	PHROG	phrog_9804	NA	unknown function
UHGV-2098706_51	UniRef90	UniRef90_A0A3A6JKE0	Inhibitor_G39P domain-containing protein	NA
UHGV-2098706_51	eggNOG-mapper	626523.GCWU000342_01038	Loader and inhibitor of phage G40P	NA
UHGV-2098706_51	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2098706_51	Structural annotation	PF11417	NA	NA
UHGV-2098706_53	PHROG	phrog_10714	NA	unknown function
UHGV-2098706_53	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-2098706_54	PHROG	phrog_20593	NA	unknown function
UHGV-2098706_54	eggNOG-mapper	483218.BACPEC_01161	NA	NA
UHGV-2098706_59	UniRef90	UniRef90_UPI001D05EDA5	LuxR C-terminal-related transcriptional regulator	NA
UHGV-2098706_59	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-2098706_59	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-2098706_61	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2098706_61	PHROG	phrog_95	integrase	integration and excision
UHGV-2098706_61	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-2098706_61	eggNOG-mapper	246199.CUS_6803	NA	NA
UHGV-2098706_61	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2098706_61	Pfam	PF07508	Recombinase	Recombinase
UHGV-2098706_61	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2098706_61	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2098706_61	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2098706_62	KOfam	K03090	sigB; RNA polymerase sigma-B factor	NA
UHGV-2098706_62	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-2098706_62	UniRef90	UniRef90_R5SC85	RNA polymerase sigma factor	NA
UHGV-2098706_62	eggNOG-mapper	1226325.HMPREF1548_05901	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-2098706_62	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-2098706_62	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2098706_62	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2098706_62	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2098706_62	Structural annotation	PF04545, PF04539, MF_00962, NF006071, COG1191	NA	NA