UHGV-2098732

Genome information

Genome length 38,674 bps

CDS count 52

Completeness 91.93% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-2098732
vOTU ID	vOTU-081158
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029510\|Ga0244782_100567\|provirus_1_38674
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.93% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.53
Jumbo phage	No

Genome content
Genome length	38,674 bps
GC content	44.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.25%
Average CDS length	699.12 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2098732_1	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2098732_2	PHROG	phrog_4105	NA	unknown function
UHGV-2098732_2	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-2098732_3	UniRef90	UniRef90_A0A564VXL8	Bacterial Ig-like domain (Group 2)	NA
UHGV-2098732_3	Structural annotation	PF01301, PF03944, MF_00279, NF040743, COG3622	NA	NA
UHGV-2098732_4	PHROG	phrog_6616	tail protein	tail
UHGV-2098732_4	UniRef90	UniRef90_UPI0015714EA8	tail fiber domain-containing protein	NA
UHGV-2098732_4	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-2098732_4	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2098732_4	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-2098732_5	PHROG	phrog_1194	NA	unknown function
UHGV-2098732_5	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-2098732_5	Pfam	PF20458	NA	DUF6711
UHGV-2098732_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2098732_6	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-2098732_6	UniRef90	UniRef90_A0A2T6EE98	SLT domain-containing protein	NA
UHGV-2098732_6	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-2098732_6	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-2098732_6	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2098732_7	KOfam	K20361	USO1; intracellular protein transport protein USO1	NA
UHGV-2098732_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2098732_7	UniRef90	UniRef90_UPI00131A0471	transglycosylase SLT domain-containing protein	NA
UHGV-2098732_7	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-2098732_7	COG	COG5283	Phage-related tail protein	NA
UHGV-2098732_9	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2098732_9	UniRef90	UniRef90_UPI0011DE12FE	NA	NA
UHGV-2098732_9	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-2098732_9	Pfam	PF19591	NA	DUF6096
UHGV-2098732_9	Structural annotation	PF19591	NA	NA
UHGV-2098732_10	PHROG	phrog_158	major tail protein	tail
UHGV-2098732_10	UniRef90	UniRef90_A0A1M7JWZ7	Phage tail tube protein, TTP	NA
UHGV-2098732_10	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-2098732_10	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-2098732_10	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2098732_11	PHROG	phrog_78	tail terminator	connector
UHGV-2098732_11	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-2098732_11	Structural annotation	PF05657	NA	NA
UHGV-2098732_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2098732_12	UniRef90	UniRef90_UPI001D01C150	HK97 gp10 family phage protein	NA
UHGV-2098732_12	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2098732_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2098732_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2098732_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2098732_13	PHROG	phrog_2168	NA	unknown function
UHGV-2098732_13	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-2098732_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2098732_14	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2098732_14	UniRef90	UniRef90_A0A173WLV7	Phage gp6-like head-tail connector protein	NA
UHGV-2098732_14	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-2098732_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2098732_14	Structural annotation	PF05135	NA	NA
UHGV-2098732_15	PHROG	phrog_2724	NA	unknown function
UHGV-2098732_15	UniRef90	UniRef90_A0A564VY53	Rho_N domain-containing protein	NA
UHGV-2098732_15	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-2098732_15	Structural annotation	PF07498	NA	NA
UHGV-2098732_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-2098732_16	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-2098732_16	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-2098732_16	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2098732_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2098732_17	UniRef90	UniRef90_UPI001D01F670	NA	NA
UHGV-2098732_17	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-2098732_17	Pfam	PF14265	NA	DUF4355
UHGV-2098732_17	Structural annotation	PF14265	NA	NA
UHGV-2098732_18	UniRef90	UniRef90_UPI000CFA6BAA	NA	NA
UHGV-2098732_18	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-2098732_19	PHROG	phrog_30750	NA	unknown function
UHGV-2098732_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2098732_20	UniRef90	UniRef90_A0A1C5S475	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-2098732_20	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2098732_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2098732_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2098732_20	COG	COG2369	NA	NA
UHGV-2098732_20	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2098732_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-2098732_21	UniRef90	UniRef90_A0A416N3J2	Phage portal protein	NA
UHGV-2098732_21	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-2098732_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2098732_21	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2098732_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2098732_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2098732_22	PHROG	phrog_10250	NA	unknown function
UHGV-2098732_22	UniRef90	UniRef90_UPI00156F5FD7	PBSX family phage terminase large subunit	NA
UHGV-2098732_22	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-2098732_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2098732_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2098732_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-2098732_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2098732_23	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-2098732_23	UniRef90	UniRef90_A0A373P435	Terminase	NA
UHGV-2098732_23	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-2098732_23	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2098732_23	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2098732_23	COG	COG5484	NA	NA
UHGV-2098732_23	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-2098732_24	eggNOG-mapper	1304866.K413DRAFT_4838	NA	NA
UHGV-2098732_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2098732_25	UniRef90	UniRef90_A0A174B4K2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-2098732_25	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-2098732_25	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2098732_25	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2098732_27	PHROG	phrog_98	NA	unknown function
UHGV-2098732_27	UniRef90	UniRef90_A0A3G8F867	YopX domain-containing protein	NA
UHGV-2098732_27	eggNOG-mapper	565653.EGBG_00901	YopX protein	NA
UHGV-2098732_27	Pfam	PF09643	YopX protein	YopX
UHGV-2098732_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2098732_29	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2098732_29	Structural annotation	PF02796, NF040595	NA	NA
UHGV-2098732_30	PHROG	phrog_7566	NA	unknown function
UHGV-2098732_30	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-2098732_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2098732_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2098732_31	UniRef90	UniRef90_A0A373N003	Single-stranded DNA-binding protein	NA
UHGV-2098732_31	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-2098732_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2098732_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2098732_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2098732_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2098732_31	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2098732_32	PHROG	phrog_3502	NA	unknown function
UHGV-2098732_32	UniRef90	UniRef90_A0A373N0F2	Winged helix-turn-helix transcriptional regulator	NA
UHGV-2098732_32	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-2098732_32	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2098732_32	Structural annotation	PF01726, MF_00732, NF041852, COG0640	NA	NA
UHGV-2098732_33	PHROG	phrog_15077	NA	unknown function
UHGV-2098732_33	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-2098732_33	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-2098732_33	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2098732_34	PHROG	phrog_8470	NA	unknown function
UHGV-2098732_34	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-2098732_34	eggNOG-mapper	1235792.C808_03081	PcfJ-like protein	NA
UHGV-2098732_34	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2098732_34	Structural annotation	PF14284	NA	NA
UHGV-2098732_35	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-2098732_36	UniRef90	UniRef90_A0A373P426	RNase H type-1 domain-containing protein	NA
UHGV-2098732_36	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2098732_36	Pfam	PF00075	RNase H	RNase_H
UHGV-2098732_36	COG	COG0328	Ribonuclease HI	NA
UHGV-2098732_36	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2098732_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2098732_37	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-2098732_37	Structural annotation	PF01446	NA	NA
UHGV-2098732_45	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2098732_45	UniRef90	UniRef90_A0A391NZN5	NA	NA
UHGV-2098732_45	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-2098732_45	Pfam	PF13643	NA	DUF4145
UHGV-2098732_45	Structural annotation	COG2250	NA	NA
UHGV-2098732_46	PHROG	phrog_14088	NA	unknown function
UHGV-2098732_46	UniRef90	UniRef90_A0A3E3DUP9	Carboxypeptidase	NA
UHGV-2098732_46	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-2098732_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2098732_48	UniRef90	UniRef90_A0A3R6SM67	XRE family transcriptional regulator	NA
UHGV-2098732_48	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-2098732_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2098732_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2098732_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2098732_51	UniRef90	UniRef90_UPI001D02BD1B	zinc-ribbon domain-containing protein	NA
UHGV-2098732_51	eggNOG-mapper	1280696.ATVY01000093_gene1442	NA	NA
UHGV-2098732_51	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-2098732_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2098732_52	PHROG	phrog_95	integrase	integration and excision
UHGV-2098732_52	UniRef90	UniRef90_A0A174S1P9	Resolvase, N terminal domain	NA
UHGV-2098732_52	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2098732_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2098732_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-2098732_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2098732_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2098732_52	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA