UHGV-2099141

Genome information

Genome length 30,679 bps

CDS count 50

Completeness 76.49% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-2099141
vOTU ID	vOTU-041182
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029441\|Ga0243753_1000066\|provirus_168869_199547
BioSample	SAMN05971456
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.21
Jumbo phage	No

Genome content
Genome length	30,679 bps
GC content	48.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.14%
Average CDS length	569.28 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2099141_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2099141_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2099141_1	UniRef90	UniRef90_A0A413WWL7	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-2099141_1	eggNOG-mapper	742723.HMPREF9477_00942	Resolvase, N terminal domain	NA
UHGV-2099141_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2099141_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2099141_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2099141_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-2099141_2	PHROG	phrog_20886	NA	unknown function
UHGV-2099141_2	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2099141_2	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-2099141_2	Structural annotation	PF06114	NA	NA
UHGV-2099141_3	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-2099141_3	UniRef90	UniRef90_A0A374P9F7	Immunity protein	NA
UHGV-2099141_3	eggNOG-mapper	702450.CUW_1238	Host cell surface-exposed lipoprotein	NA
UHGV-2099141_3	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-2099141_3	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2099141_3	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-2099141_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2099141_4	UniRef90	UniRef90_A0A417EH10	XRE family transcriptional regulator	NA
UHGV-2099141_4	eggNOG-mapper	546273.VEIDISOL_00692	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2099141_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2099141_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2099141_4	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG3655	NA	NA
UHGV-2099141_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2099141_5	UniRef90	UniRef90_A0A1C5LRT3	HTH-type transcriptional regulator immR	NA
UHGV-2099141_5	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-2099141_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2099141_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2099141_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2099141_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2099141_7	PHROG	phrog_585	NA	unknown function
UHGV-2099141_7	UniRef90	UniRef90_A0A851IGZ3	NA	NA
UHGV-2099141_7	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-2099141_7	Pfam	PF10711	NA	DUF2513
UHGV-2099141_7	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-2099141_16	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2099141_16	UniRef90	UniRef90_A0A1C6CBG4	Siphovirus Gp157	NA
UHGV-2099141_16	eggNOG-mapper	447909.A6M981_9VIRU	Siphovirus Gp157	NA
UHGV-2099141_16	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2099141_16	Structural annotation	PF05565	NA	NA
UHGV-2099141_17	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2099141_17	UniRef90	UniRef90_A0A416D916	Single-stranded DNA-binding protein	NA
UHGV-2099141_17	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-2099141_17	Pfam	PF04404	ERF superfamily	ERF
UHGV-2099141_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2099141_17	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2099141_18	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2099141_18	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-2099141_18	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2099141_19	PHROG	phrog_7566	NA	unknown function
UHGV-2099141_19	UniRef90	UniRef90_A0A3R6TI62	Phosphoenolpyruvate carboxykinase	NA
UHGV-2099141_19	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-2099141_20	PHROG	phrog_2113	NA	unknown function
UHGV-2099141_20	Pfam	PF08279	HTH domain	HTH_11
UHGV-2099141_21	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2099141_21	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-2099141_21	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-2099141_22	PHROG	phrog_15768	NA	unknown function
UHGV-2099141_22	UniRef90	UniRef90_A0A316T437	NA	NA
UHGV-2099141_22	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-2099141_22	AcrCatalog	cluster_38323	NA	NA
UHGV-2099141_22	Pfam	PF19808	NA	DUF6291
UHGV-2099141_22	Structural annotation	PF19808	NA	NA
UHGV-2099141_23	Structural annotation	PF02295, PF18697, MF_01177, NF033788, COG0640	NA	NA
UHGV-2099141_25	PHROG	phrog_7839	NA	unknown function
UHGV-2099141_25	eggNOG-mapper	1410650.JHWL01000003_gene2844	NA	NA
UHGV-2099141_25	Structural annotation	PF08860	NA	NA
UHGV-2099141_27	eggNOG-mapper	397287.C807_03473	NA	NA
UHGV-2099141_28	UniRef90	UniRef90_A0A417IW88	Sarcolemmal membrane-associated protein	NA
UHGV-2099141_28	eggNOG-mapper	1235792.C808_01059	NA	NA
UHGV-2099141_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2099141_30	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-2099141_30	eggNOG-mapper	411902.CLOBOL_00148	NA	NA
UHGV-2099141_30	Structural annotation	PF02996	NA	NA
UHGV-2099141_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2099141_32	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2099141_32	UniRef90	UniRef90_A0A416L6A9	Phage portal protein	NA
UHGV-2099141_32	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-2099141_32	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2099141_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2099141_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2099141_32	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2099141_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2099141_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2099141_33	UniRef90	UniRef90_A0A416G636	PBSX family phage terminase large subunit	NA
UHGV-2099141_33	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-2099141_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-2099141_33	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2099141_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-2099141_34	UniRef90	UniRef90_A0A417SPJ5	Phage portal protein	NA
UHGV-2099141_34	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-2099141_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2099141_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2099141_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2099141_35	UniRef90	UniRef90_A0A3R6Q5I6	Minor capsid protein	NA
UHGV-2099141_35	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-2099141_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2099141_35	COG	COG2369	NA	NA
UHGV-2099141_35	Structural annotation	PF06152, PF12636	NA	NA
UHGV-2099141_36	PHROG	phrog_27009	NA	unknown function
UHGV-2099141_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2099141_37	UniRef90	UniRef90_UPI001D080C73	phage scaffolding protein	NA
UHGV-2099141_37	eggNOG-mapper	999413.HMPREF1094_00216	COG NOG36366 non supervised orthologous group	NA
UHGV-2099141_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2099141_37	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2099141_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-2099141_38	UniRef90	UniRef90_A0A3R6L2J3	Phage major capsid protein	NA
UHGV-2099141_38	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-2099141_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2099141_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2099141_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2099141_38	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2099141_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2099141_39	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-2099141_40	PHROG	phrog_3366	NA	unknown function
UHGV-2099141_40	Pfam	PF20536	NA	DUF6751
UHGV-2099141_40	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-2099141_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2099141_41	UniRef90	UniRef90_UPI00156EFCF3	minor capsid protein	NA
UHGV-2099141_41	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-2099141_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2099141_41	Structural annotation	PF11114	NA	NA
UHGV-2099141_42	PHROG	phrog_3266	tail completion	connector
UHGV-2099141_42	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-2099141_42	Structural annotation	PF12691	NA	NA
UHGV-2099141_43	PHROG	phrog_820	major tail protein	tail
UHGV-2099141_43	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-2099141_43	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-2099141_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2099141_44	Structural annotation	PF20378	NA	NA
UHGV-2099141_45	PHROG	phrog_706	NA	unknown function
UHGV-2099141_45	UniRef90	UniRef90_A0A1C5ZNX7	Bacteriophage Gp15 protein	NA
UHGV-2099141_45	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-2099141_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2099141_45	Structural annotation	PF06854	NA	NA
UHGV-2099141_46	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2099141_46	UniRef90	UniRef90_A0A3R6MPD0	Phage tail tape measure protein	NA
UHGV-2099141_46	eggNOG-mapper	1235792.C808_05377	Phage tail tape measure protein, TP901 family	NA
UHGV-2099141_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2099141_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2099141_46	COG	COG5283	Phage-related tail protein	NA
UHGV-2099141_46	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2099141_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2099141_47	UniRef90	UniRef90_A0A416L6F4	MtfA protein	NA
UHGV-2099141_47	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-2099141_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-2099141_47	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-2099141_48	PHROG	phrog_3558	tail protein	tail
UHGV-2099141_48	UniRef90	UniRef90_A0A3R6M176	Prophage_tail domain-containing protein	NA
UHGV-2099141_48	eggNOG-mapper	1304866.K413DRAFT_1236	Phage minor structural protein, N-terminal	NA
UHGV-2099141_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2099141_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2099141_48	COG	COG4926	Phage-related protein	NA
UHGV-2099141_48	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2099141_49	PHROG	phrog_18444	NA	unknown function
UHGV-2099141_49	UniRef90	UniRef90_A0A7X5CHF3	Peptide chain release factor 2	NA
UHGV-2099141_50	eggNOG-mapper	610130.Closa_0759	NA	NA