UHGV-2099597

Genome information

Genome length 45,314 bps

CDS count 62

Completeness 61.54% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-2099597
vOTU ID	vOTU-015011
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029434\|Ga0243855_1000151\|provirus_1_45314
BioSample	SAMN05971566
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.41
Jumbo phage	No

Genome content
Genome length	45,314 bps
GC content	53.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	92.03%
Average CDS length	676.21 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2099597_3	PHROG	phrog_1887	tail protein	tail
UHGV-2099597_3	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2099597_4	Structural annotation	PF19266, PF02010, MF_04116, NF032891, TIGR01633, COG3499, COG3506, COG3291	NA	NA
UHGV-2099597_5	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-2099597_5	PHROG	phrog_4211	tail length tape measure protein	tail
UHGV-2099597_5	eggNOG-mapper	397290.C810_01746	Phage-related minor tail protein	NA
UHGV-2099597_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2099597_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2099597_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2099597_5	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2099597_7	Structural annotation	PF06488, PF02368, TIGR01603, COG5492	NA	NA
UHGV-2099597_9	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-2099597_9	Structural annotation	PF14600	NA	NA
UHGV-2099597_10	PHROG	phrog_22773	NA	unknown function
UHGV-2099597_10	UniRef90	UniRef90_G9YP62	Toxin-antitoxin system, toxin component domain protein	NA
UHGV-2099597_10	eggNOG-mapper	742738.HMPREF9460_00363	NA	NA
UHGV-2099597_12	Structural annotation	PF09646	NA	NA
UHGV-2099597_15	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2099597_15	Structural annotation	PF02368, PF18957, MF_04116, NF040788, COG3291, COG5614	NA	NA
UHGV-2099597_16	Structural annotation	TIGR02215	NA	NA
UHGV-2099597_18	PHROG	phrog_13589	NA	unknown function
UHGV-2099597_18	eggNOG-mapper	1232428.CAVO010000002_gene2342	ATPase involved in DNA repair	NA
UHGV-2099597_18	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2099597_20	PHROG	phrog_4088	NA	unknown function
UHGV-2099597_20	Structural annotation	PF03864, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2099597_22	PHROG	phrog_3313	NA	unknown function
UHGV-2099597_22	Structural annotation	PF09979, TIGR01543, COG3740	NA	NA
UHGV-2099597_23	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-2099597_24	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2099597_24	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2099597_24	UniRef90	UniRef90_A0A1Y4EUA0	Bro-N domain-containing protein	NA
UHGV-2099597_24	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-2099597_24	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2099597_24	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2099597_24	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2099597_25	PHROG	phrog_2739	portal protein	head and packaging
UHGV-2099597_25	Structural annotation	PF07230, MF_04135, TIGR01537, COG5511	NA	NA
UHGV-2099597_27	PHROG	phrog_15503	NA	unknown function
UHGV-2099597_27	UniRef90	UniRef90_A0A4Q2LHI6	DNA-packaging protein	NA
UHGV-2099597_27	eggNOG-mapper	881953.E0YJ34_9CAUD	NA	NA
UHGV-2099597_27	Structural annotation	PF04466, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2099597_30	eggNOG-mapper	509191.AEDB02000003_gene1019	NA	NA
UHGV-2099597_31	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2099597_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2099597_31	UniRef90	UniRef90_UPI0018989C77	helix-turn-helix domain-containing protein	NA
UHGV-2099597_31	eggNOG-mapper	903814.ELI_1009	DNA-binding helix-turn-helix protein	NA
UHGV-2099597_31	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2099597_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2099597_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2099597_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2099597_32	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2099597_32	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-2099597_32	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-2099597_33	PHROG	phrog_8684	NA	unknown function
UHGV-2099597_33	UniRef90	UniRef90_U2R3B6	YopX domain-containing protein	NA
UHGV-2099597_33	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-2099597_33	Pfam	PF09643	YopX protein	YopX
UHGV-2099597_33	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2099597_36	PHROG	phrog_37865	NA	unknown function
UHGV-2099597_37	eggNOG-mapper	189425.PGRAT_18935	NA	NA
UHGV-2099597_38	PHROG	phrog_25732	NA	unknown function
UHGV-2099597_38	Structural annotation	NF011227	NA	NA
UHGV-2099597_41	PHROG	phrog_111	DNA methyltransferase	other
UHGV-2099597_41	UniRef90	UniRef90_UPI000B356992	adenine methyltransferase	NA
UHGV-2099597_41	eggNOG-mapper	1121121.KB894312_gene3179	DNA N-6-adenine-methyltransferase	NA
UHGV-2099597_41	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-2099597_41	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-2099597_41	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-2099597_42	PHROG	phrog_474	phosphofructokinase	other
UHGV-2099597_42	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-2099597_42	eggNOG-mapper	1095750.HMPREF9970_1026	NA	NA
UHGV-2099597_42	Pfam	PF19905	NA	DUF6378
UHGV-2099597_42	Structural annotation	PF19905	NA	NA
UHGV-2099597_44	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2099597_44	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2099597_44	UniRef90	UniRef90_A0A1C6BCB2	DNA helicase	NA
UHGV-2099597_44	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-2099597_44	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2099597_44	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2099597_44	COG	COG0305	Replicative DNA helicase	NA
UHGV-2099597_44	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-2099597_45	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2099597_45	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-2099597_45	eggNOG-mapper	428127.EUBDOL_01393	NA	NA
UHGV-2099597_45	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2099597_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2099597_45	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-2099597_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2099597_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2099597_48	UniRef90	UniRef90_A0A1H0W5S2	Helix-turn-helix domain-containing protein	NA
UHGV-2099597_48	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-2099597_48	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2099597_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2099597_48	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-2099597_49	UniRef90	UniRef90_UPI0013794FA4	helix-turn-helix domain-containing protein	NA
UHGV-2099597_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2099597_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2099597_58	UniRef90	UniRef90_UPI0004E26D7B	helix-turn-helix transcriptional regulator	NA
UHGV-2099597_58	eggNOG-mapper	1121423.JONT01000002_gene2373	NA	NA
UHGV-2099597_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2099597_58	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-2099597_59	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2099597_59	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2099597_59	UniRef90	UniRef90_UPI00164C6CD0	XRE family transcriptional regulator	NA
UHGV-2099597_59	eggNOG-mapper	718252.FP2_06870	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2099597_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2099597_59	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2099597_59	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2099597_59	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2099597_60	KOfam	K07075	NA	NA
UHGV-2099597_60	UniRef90	UniRef90_C7H2F2	Nucleotidyltransferase substrate-binding family protein	NA
UHGV-2099597_60	eggNOG-mapper	411483.FAEPRAA2165_00449	Nucleotidyltransferase substrate binding protein like	NA
UHGV-2099597_60	Pfam	PF18765	Polymerase beta, Nucleotidyltransferase	Polbeta
UHGV-2099597_60	Pfam	PF08780	Nucleotidyltransferase substrate binding protein like	NTase_sub_bind
UHGV-2099597_60	NCBIFam	TIGR01987.1	HI0074 family nucleotidyltransferase substrate-binding subunit	NA
UHGV-2099597_60	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-2099597_60	Structural annotation	PF08780, PF18765, TIGR01987, COG1669, COG2445	NA	NA
UHGV-2099597_61	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-2099597_61	eggNOG-mapper	548477.HMPREF0294_2478	Host cell surface-exposed lipoprotein	NA
UHGV-2099597_61	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-2099597_61	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2099597_61	Structural annotation	PF07553, MF_01114, NF001062, COG2137	NA	NA