UHGV-2099777

Genome information

Genome length 38,658 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-2099777
vOTU ID	vOTU-074950
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029514\|Ga0244787_100261\|provirus_18247_56904
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.09
Jumbo phage	No

Genome content
Genome length	38,658 bps
GC content	45.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.90%
Average CDS length	714.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2099777_1	KOfam	K14059	int; integrase	NA
UHGV-2099777_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2099777_1	UniRef90	UniRef90_UPI00191722F2	site-specific integrase	NA
UHGV-2099777_1	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2099777_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2099777_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2099777_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2099777_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2099777_2	PHROG	phrog_37898	NA	unknown function
UHGV-2099777_2	UniRef90	UniRef90_UPI000E434E8B	NA	NA
UHGV-2099777_2	eggNOG-mapper	877414.ATWA01000082_gene1189	NA	NA
UHGV-2099777_2	Pfam	PF10387	NA	DUF2442
UHGV-2099777_2	Structural annotation	PF10387	NA	NA
UHGV-2099777_3	eggNOG-mapper	180332.JTGN01000007_gene3629	NA	NA
UHGV-2099777_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2099777_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2099777_5	UniRef90	UniRef90_F3AAT3	HTH cro/C1-type domain-containing protein	NA
UHGV-2099777_5	eggNOG-mapper	1235798.C817_05486	Helix-turn-helix XRE-family like proteins	NA
UHGV-2099777_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2099777_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2099777_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2099777_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2099777_6	eggNOG-mapper	1235798.C817_05486	Helix-turn-helix XRE-family like proteins	NA
UHGV-2099777_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2099777_9	PHROG	phrog_750	NA	unknown function
UHGV-2099777_9	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-2099777_9	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2099777_10	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-2099777_10	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-2099777_12	PHROG	phrog_5070	NA	unknown function
UHGV-2099777_12	UniRef90	UniRef90_A0A3A9AGI5	Polymer-forming cytoskeletal protein	NA
UHGV-2099777_12	eggNOG-mapper	445972.ANACOL_01820	COG NOG06285 non supervised orthologous group	NA
UHGV-2099777_12	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-2099777_12	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-2099777_12	Structural annotation	NF040481	NA	NA
UHGV-2099777_14	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2099777_14	PHROG	phrog_5696	NA	unknown function
UHGV-2099777_14	UniRef90	UniRef90_A0A1C5WE14	Type I restriction-modification system methyltransferase subunit	NA
UHGV-2099777_14	eggNOG-mapper	1245471.PCA10_p0930	N-6 DNA Methylase	NA
UHGV-2099777_14	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2099777_14	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2099777_14	Structural annotation	COG0286	NA	NA
UHGV-2099777_15	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2099777_15	PHROG	phrog_1	integrase	integration and excision
UHGV-2099777_15	UniRef90	UniRef90_UPI00156E0BE9	tyrosine-type recombinase/integrase	NA
UHGV-2099777_15	eggNOG-mapper	545696.HOLDEFILI_00734	Belongs to the 'phage' integrase family	NA
UHGV-2099777_15	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2099777_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2099777_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2099777_15	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2099777_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2099777_16	eggNOG-mapper	97139.C824_06117	NA	NA
UHGV-2099777_16	Structural annotation	PF01446	NA	NA
UHGV-2099777_17	eggNOG-mapper	1123389.ATXJ01000005_gene1934	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2099777_17	COG	COG0328	Ribonuclease HI	NA
UHGV-2099777_17	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2099777_18	PHROG	phrog_7566	NA	unknown function
UHGV-2099777_18	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-2099777_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2099777_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2099777_19	UniRef90	UniRef90_A0A1C5WD91	Single-stranded DNA-binding protein	NA
UHGV-2099777_19	eggNOG-mapper	742723.HMPREF9477_01387	Single-strand binding protein family	NA
UHGV-2099777_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2099777_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2099777_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2099777_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2099777_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2099777_20	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-2099777_21	PHROG	phrog_8470	NA	unknown function
UHGV-2099777_21	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-2099777_21	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-2099777_21	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2099777_21	Structural annotation	PF14284	NA	NA
UHGV-2099777_22	PHROG	phrog_15077	NA	unknown function
UHGV-2099777_22	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-2099777_22	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-2099777_22	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2099777_23	eggNOG-mapper	411468.CLOSCI_00555	NA	NA
UHGV-2099777_24	PHROG	phrog_8684	NA	unknown function
UHGV-2099777_24	UniRef90	UniRef90_A0A1C6E0T1	YopX protein	NA
UHGV-2099777_24	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-2099777_24	Pfam	PF09643	YopX protein	YopX
UHGV-2099777_24	Pfam	PF04448	NA	DUF551
UHGV-2099777_24	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2099777_27	UniRef90	UniRef90_A0A412ELZ1	NA	NA
UHGV-2099777_27	Pfam	PF19789	NA	DUF6273
UHGV-2099777_27	Structural annotation	PF19789	NA	NA
UHGV-2099777_28	PHROG	phrog_6568	NA	unknown function
UHGV-2099777_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2099777_29	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-2099777_29	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-2099777_29	Pfam	PF07374	NA	DUF1492
UHGV-2099777_29	Structural annotation	PF04545	NA	NA
UHGV-2099777_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2099777_30	UniRef90	UniRef90_A0A1C6DZR4	HNH endonuclease	NA
UHGV-2099777_30	eggNOG-mapper	86416.Clopa_0335	HNH nucleases	NA
UHGV-2099777_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2099777_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2099777_30	Structural annotation	PF05766, NF008448	NA	NA
UHGV-2099777_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2099777_32	UniRef90	UniRef90_A0A1C6DZH3	Phage terminase-like protein, large subunit	NA
UHGV-2099777_32	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-2099777_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2099777_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2099777_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2099777_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2099777_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-2099777_33	UniRef90	UniRef90_A0A1C6E0D8	Phage portal protein, HK97 family	NA
UHGV-2099777_33	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-2099777_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2099777_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2099777_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2099777_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2099777_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2099777_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2099777_34	UniRef90	UniRef90_A0A1C6DZF0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2099777_34	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-2099777_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2099777_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2099777_34	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2099777_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-2099777_35	UniRef90	UniRef90_A0A1C6DZ71	Phage major capsid protein, HK97 family	NA
UHGV-2099777_35	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-2099777_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2099777_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2099777_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2099777_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2099777_36	PHROG	phrog_749	NA	unknown function
UHGV-2099777_36	UniRef90	UniRef90_UPI001C0F1EE0	head-tail connector protein	NA
UHGV-2099777_36	eggNOG-mapper	1347392.CCEZ01000045_gene14	NA	NA
UHGV-2099777_37	PHROG	phrog_19734	NA	unknown function
UHGV-2099777_37	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-2099777_37	eggNOG-mapper	1211817.CCAT010000053_gene2134	NA	NA
UHGV-2099777_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2099777_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2099777_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2099777_38	UniRef90	UniRef90_A0A1C6DYP9	Phage protein, HK97 gp10 family	NA
UHGV-2099777_38	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-2099777_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2099777_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2099777_38	Structural annotation	TIGR01725	NA	NA
UHGV-2099777_39	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-2099777_39	COG	COG5492	NA	NA
UHGV-2099777_39	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2099777_40	PHROG	phrog_88	major tail protein	tail
UHGV-2099777_40	UniRef90	UniRef90_A0A1C6DYZ6	Phage major tail protein, phi13 family	NA
UHGV-2099777_40	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-2099777_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2099777_40	COG	COG5492	NA	NA
UHGV-2099777_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2099777_41	PHROG	phrog_2115	tail protein	tail
UHGV-2099777_41	Structural annotation	PF11836	NA	NA
UHGV-2099777_43	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-2099777_43	PHROG	phrog_5218	NA	unknown function
UHGV-2099777_43	UniRef90	UniRef90_A0A1C6DY47	Phage-related minor tail protein	NA
UHGV-2099777_43	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-2099777_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2099777_43	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2099777_44	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-2099777_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-2099777_44	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-2099777_45	PHROG	phrog_18110	NA	unknown function
UHGV-2099777_45	UniRef90	UniRef90_A0A1C6DYP3	Phage minor structural protein, N-terminal region	NA
UHGV-2099777_45	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-2099777_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2099777_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2099777_45	COG	COG4926	Phage-related protein	NA
UHGV-2099777_46	PHROG	phrog_16164	NA	unknown function
UHGV-2099777_46	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-2099777_46	Structural annotation	PF00015, NF032891	NA	NA
UHGV-2099777_48	PHROG	phrog_28526	NA	unknown function
UHGV-2099777_48	UniRef90	UniRef90_A0A3D4R9W1	Antitoxin	NA
UHGV-2099777_48	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-2099777_49	PHROG	phrog_199	holin	lysis
UHGV-2099777_49	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-2099777_49	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-2099777_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2099777_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2099777_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2099777_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2099777_50	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2099777_50	PHROG	phrog_1794	amidase	lysis
UHGV-2099777_50	UniRef90	UniRef90_A0A1C6J4E5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2099777_50	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-2099777_50	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2099777_50	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2099777_50	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA