UHGV-2099976

Genome information

Genome length 32,142 bps

CDS count 54

Completeness 76.02% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-2099976
vOTU ID	vOTU-027598
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029605\|Ga0245145_100419\|provirus_2_32143
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.97
Jumbo phage	No

Genome content
Genome length	32,142 bps
GC content	40.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.01%
Average CDS length	540.61 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2099976_1	KOfam	K16551	AKAP9, AKAP350; A-kinase anchor protein 9	NA
UHGV-2099976_1	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2099976_1	UniRef90	UniRef90_A0A4S2AGB7	Phage tail tape measure protein (Fragment)	NA
UHGV-2099976_1	eggNOG-mapper	411483.FAEPRAA2165_01911	Phage tail tape measure protein, TP901 family	NA
UHGV-2099976_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2099976_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2099976_1	COG	COG5283	Phage-related tail protein	NA
UHGV-2099976_2	PHROG	phrog_2115	tail protein	tail
UHGV-2099976_2	Structural annotation	PF11836	NA	NA
UHGV-2099976_3	PHROG	phrog_88	major tail protein	tail
UHGV-2099976_3	UniRef90	UniRef90_A0A1C6KA12	Phage major tail protein, phi13 family	NA
UHGV-2099976_3	eggNOG-mapper	1094508.Tsac_2419	phage major tail protein	NA
UHGV-2099976_3	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2099976_3	COG	COG5492	NA	NA
UHGV-2099976_3	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2099976_4	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2099976_4	UniRef90	UniRef90_A0A1C6KB54	Phage protein, HK97 gp10 family	NA
UHGV-2099976_4	eggNOG-mapper	1235792.C808_03060	NA	NA
UHGV-2099976_4	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2099976_4	Structural annotation	TIGR01725	NA	NA
UHGV-2099976_5	Structural annotation	PF05657	NA	NA
UHGV-2099976_6	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2099976_6	UniRef90	UniRef90_R5ITS8	Phage head-tail adaptor	NA
UHGV-2099976_6	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-2099976_6	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2099976_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2099976_7	PHROG	phrog_5223	neck protein	connector
UHGV-2099976_7	UniRef90	UniRef90_H6LCB7	Putative prophage LambdaBa04 DNA packaging protein	NA
UHGV-2099976_7	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-2099976_7	Structural annotation	TIGR01560	NA	NA
UHGV-2099976_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-2099976_8	UniRef90	UniRef90_A0A1C6KA65	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2099976_8	eggNOG-mapper	1235793.C809_01920	Phage capsid family	NA
UHGV-2099976_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2099976_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2099976_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2099976_8	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2099976_9	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2099976_9	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2099976_9	UniRef90	UniRef90_A0A1C6KA38	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2099976_9	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-2099976_9	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2099976_9	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2099976_9	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-2099976_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-2099976_10	UniRef90	UniRef90_A0A1C6K9V7	Phage portal protein, HK97 family	NA
UHGV-2099976_10	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-2099976_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2099976_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2099976_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2099976_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2099976_11	UniRef90	UniRef90_A0A1C6K9N5	Phage terminase-like protein, large subunit	NA
UHGV-2099976_11	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-2099976_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2099976_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2099976_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2099976_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2099976_12	PHROG	phrog_1066	NA	unknown function
UHGV-2099976_12	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-2099976_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2099976_13	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2099976_13	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-2099976_13	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-2099976_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2099976_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2099976_14	UniRef90	UniRef90_A0A1C6K9Y0	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-2099976_14	eggNOG-mapper	1235792.C808_05326	NA	NA
UHGV-2099976_14	Structural annotation	PF02996	NA	NA
UHGV-2099976_15	PHROG	phrog_874	NA	unknown function
UHGV-2099976_15	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-2099976_16	PHROG	phrog_15198	NA	unknown function
UHGV-2099976_16	UniRef90	UniRef90_UPI000CF85C21	NA	NA
UHGV-2099976_17	PHROG	phrog_8684	NA	unknown function
UHGV-2099976_17	UniRef90	UniRef90_A0A1C6K9I9	YopX protein	NA
UHGV-2099976_17	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-2099976_17	Pfam	PF09643	YopX protein	YopX
UHGV-2099976_17	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2099976_17	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2099976_19	PHROG	phrog_20593	NA	unknown function
UHGV-2099976_20	UniRef90	UniRef90_UPI001D099705	NA	NA
UHGV-2099976_21	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-2099976_24	PHROG	phrog_7566	NA	unknown function
UHGV-2099976_24	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-2099976_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2099976_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2099976_25	UniRef90	UniRef90_A0A1C6IVA5	Single-stranded DNA-binding protein	NA
UHGV-2099976_25	eggNOG-mapper	411459.RUMOBE_00993	NA	NA
UHGV-2099976_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2099976_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2099976_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2099976_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2099976_25	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2099976_26	PHROG	phrog_31560	NA	unknown function
UHGV-2099976_26	eggNOG-mapper	796945.HMPREF1145_2028	NA	NA
UHGV-2099976_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2099976_30	PHROG	phrog_15077	NA	unknown function
UHGV-2099976_30	UniRef90	UniRef90_UPI0018AA1051	ParB/RepB/Spo0J family partition protein	NA
UHGV-2099976_30	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-2099976_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2099976_30	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2099976_31	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2099976_31	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2099976_31	UniRef90	UniRef90_UPI001C00DAF9	ParA family protein	NA
UHGV-2099976_31	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-2099976_31	Pfam	PF13614	AAA domain	AAA_31
UHGV-2099976_31	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2099976_31	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2099976_33	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2099976_33	UniRef90	UniRef90_A0A1C6IUE3	Ribonuclease H	NA
UHGV-2099976_33	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2099976_33	Pfam	PF00075	RNase H	RNase_H
UHGV-2099976_33	COG	COG0328	Ribonuclease HI	NA
UHGV-2099976_33	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2099976_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2099976_34	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-2099976_34	Structural annotation	PF01446	NA	NA
UHGV-2099976_35	PHROG	phrog_6058	NA	unknown function
UHGV-2099976_35	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-2099976_35	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-2099976_37	PHROG	phrog_750	NA	unknown function
UHGV-2099976_37	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-2099976_37	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2099976_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2099976_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2099976_38	UniRef90	UniRef90_UPI001EDAB686	helix-turn-helix domain-containing protein	NA
UHGV-2099976_38	eggNOG-mapper	1211844.CBLM010000016_gene1521	Helix-turn-helix XRE-family like proteins	NA
UHGV-2099976_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2099976_47	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2099976_47	UniRef90	UniRef90_A0A1C6ITJ7	NA	NA
UHGV-2099976_47	eggNOG-mapper	626523.GCWU000342_01044	NA	NA
UHGV-2099976_47	Pfam	PF13643	NA	DUF4145
UHGV-2099976_47	Structural annotation	COG2250	NA	NA
UHGV-2099976_48	PHROG	phrog_14088	NA	unknown function
UHGV-2099976_48	UniRef90	UniRef90_UPI001655B004	carboxypeptidase	NA
UHGV-2099976_48	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-2099976_49	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2099976_49	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2099976_49	UniRef90	UniRef90_UPI00156F14B6	helix-turn-helix domain-containing protein	NA
UHGV-2099976_49	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-2099976_49	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2099976_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2099976_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2099976_51	eggNOG-mapper	180332.JTGN01000007_gene3629	NA	NA
UHGV-2099976_52	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-2099976_52	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2099976_52	UniRef90	UniRef90_A0A1C6IT83	Plasmid stabilisation system protein	NA
UHGV-2099976_52	eggNOG-mapper	411469.EUBHAL_01995	Addiction module toxin, RelE StbE family	NA
UHGV-2099976_52	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-2099976_52	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-2099976_52	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-2099976_53	eggNOG-mapper	1121115.AXVN01000047_gene1270	NA	NA
UHGV-2099976_54	KOfam	K14059	int; integrase	NA
UHGV-2099976_54	PHROG	phrog_1	integrase	integration and excision
UHGV-2099976_54	UniRef90	UniRef90_A0A1C6H8L7	Site-specific tyrosine recombinase XerD	NA
UHGV-2099976_54	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-2099976_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2099976_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2099976_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA