UHGV-2100651

Genome information

Genome length 37,843 bps

CDS count 52

Completeness 73.19% (medium-quality)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-2100651
vOTU ID	vOTU-018811
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029546\|Ga0244998_100290\|provirus_46173_84015
BioSample	SAMEA3708842
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.23
Jumbo phage	No

Genome content
Genome length	37,843 bps
GC content	32.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	95.54%
Average CDS length	697.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2100651_1	KOfam	K14059	int; integrase	NA
UHGV-2100651_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2100651_1	UniRef90	UniRef90_UPI0019585FBF	site-specific integrase	NA
UHGV-2100651_1	eggNOG-mapper	864563.HMPREF9166_1293	Belongs to the 'phage' integrase family	NA
UHGV-2100651_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2100651_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2100651_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2100651_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2100651_2	PHROG	phrog_14333	NA	unknown function
UHGV-2100651_2	UniRef90	UniRef90_A0A2V2CXN4	NA	NA
UHGV-2100651_2	eggNOG-mapper	1508644.SFBmNL_01555	NA	NA
UHGV-2100651_2	Pfam	PF13711	NA	DUF4160
UHGV-2100651_2	Structural annotation	PF13711	NA	NA
UHGV-2100651_3	PHROG	phrog_37898	NA	unknown function
UHGV-2100651_3	UniRef90	UniRef90_UPI001AB023A5	NA	NA
UHGV-2100651_3	eggNOG-mapper	1508644.SFBmNL_01554	NA	NA
UHGV-2100651_3	Pfam	PF10387	NA	DUF2442
UHGV-2100651_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2100651_3	Structural annotation	PF10387	NA	NA
UHGV-2100651_4	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-2100651_4	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-2100651_4	UniRef90	UniRef90_H3K6W7	HTH cro/C1-type domain-containing protein	NA
UHGV-2100651_4	eggNOG-mapper	592026.GCWU0000282_001444	Helix-turn-helix domain	NA
UHGV-2100651_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2100651_4	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-2100651_5	PHROG	phrog_8263	NA	unknown function
UHGV-2100651_5	UniRef90	UniRef90_A0A398BE45	Outer membrane protein assembly factor BamE	NA
UHGV-2100651_5	eggNOG-mapper	279010.BL00544	NA	NA
UHGV-2100651_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2100651_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2100651_6	UniRef90	UniRef90_UPI00195CC235	helix-turn-helix domain-containing protein	NA
UHGV-2100651_6	eggNOG-mapper	171693.BN988_02320	Helix-turn-helix domain	NA
UHGV-2100651_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2100651_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2100651_6	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-2100651_7	UniRef90	UniRef90_UPI00195E5EFE	helix-turn-helix transcriptional regulator	NA
UHGV-2100651_7	eggNOG-mapper	272626.lin2421	sequence-specific DNA binding	NA
UHGV-2100651_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2100651_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2100651_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2100651_9	PHROG	phrog_33611	NA	unknown function
UHGV-2100651_10	UniRef90	UniRef90_UPI0018C8118B	helix-turn-helix domain-containing protein	NA
UHGV-2100651_10	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-2100651_11	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2100651_11	UniRef90	UniRef90_UPI001D02F97C	helix-turn-helix transcriptional regulator	NA
UHGV-2100651_11	eggNOG-mapper	1035196.HMPREF9998_01762	Helix-turn-helix XRE-family like proteins	NA
UHGV-2100651_11	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2100651_11	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-2100651_13	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2100651_13	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2100651_13	UniRef90	UniRef90_H3K6V8	AAA_23 domain-containing protein	NA
UHGV-2100651_13	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-2100651_13	Pfam	PF13555	P-loop containing region of AAA domain	AAA_29
UHGV-2100651_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2100651_13	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2100651_14	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2100651_14	UniRef90	UniRef90_UPI001D032ADE	recombinase RecT	NA
UHGV-2100651_14	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-2100651_14	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2100651_15	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2100651_15	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2100651_15	UniRef90	UniRef90_H3K6V6	Lactamase_B domain-containing protein	NA
UHGV-2100651_15	eggNOG-mapper	1294142.CINTURNW_1011	Metallo-beta-lactamase superfamily	NA
UHGV-2100651_15	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2100651_15	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2100651_15	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2100651_17	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2100651_17	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2100651_17	UniRef90	UniRef90_H3K6V3	DnaD and phage-associated domain-containing protein	NA
UHGV-2100651_17	eggNOG-mapper	936573.HMPREF1147_1306	DnaD domain protein	NA
UHGV-2100651_17	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2100651_17	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2100651_17	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2100651_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2100651_17	Structural annotation	PF01978, PF07261, MF_01819, TIGR04176, COG3935	NA	NA
UHGV-2100651_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2100651_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2100651_18	UniRef90	UniRef90_H3K6V2	IstB_IS21 domain-containing protein	NA
UHGV-2100651_18	eggNOG-mapper	1280706.AUJE01000003_gene2277	DNA-dependent DNA replication	NA
UHGV-2100651_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2100651_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2100651_18	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-2100651_23	PHROG	phrog_6568	NA	unknown function
UHGV-2100651_24	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2100651_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2100651_26	UniRef90	UniRef90_E2ZBE9	Sigma-70, region 4	NA
UHGV-2100651_26	eggNOG-mapper	1200557.JHWV01000006_gene1739	NA	NA
UHGV-2100651_26	Structural annotation	PF08281, NF008895, COG1595	NA	NA
UHGV-2100651_27	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2100651_27	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2100651_27	UniRef90	UniRef90_H3K6T8	ParB-like partition protein (Fragment)	NA
UHGV-2100651_27	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-2100651_27	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2100651_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2100651_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2100651_27	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-2100651_28	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-2100651_28	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-2100651_28	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-2100651_28	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-2100651_28	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-2100651_29	KOfam	K22226	ahbC; Fe-coproporphyrin III synthase	NA
UHGV-2100651_29	UniRef90	UniRef90_H3K6T6	Radical SAM core domain-containing protein	NA
UHGV-2100651_29	eggNOG-mapper	411459.RUMOBE_01047	Radical SAM superfamily	NA
UHGV-2100651_29	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-2100651_29	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2100651_29	COG	COG0535	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	NA
UHGV-2100651_29	Structural annotation	PF00834, MF_00660, NF012164, COG0535	NA	NA
UHGV-2100651_30	UniRef90	UniRef90_A0A6M3L520	Putative DNA binding, helix-turn-helix domain containing protein	NA
UHGV-2100651_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2100651_31	PHROG	phrog_5902	NA	unknown function
UHGV-2100651_31	UniRef90	UniRef90_UPI001D02C03A	terminase B	NA
UHGV-2100651_31	eggNOG-mapper	697281.Mahau_0567	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-2100651_31	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2100651_31	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-2100651_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-2100651_32	UniRef90	UniRef90_A0A1M6HN10	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2100651_32	eggNOG-mapper	632292.Calhy_0760	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2100651_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2100651_32	COG	COG3567	NA	NA
UHGV-2100651_33	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-2100651_33	UniRef90	UniRef90_F3ZZG2	Gln_amidase domain-containing protein	NA
UHGV-2100651_33	eggNOG-mapper	1304880.JAGB01000002_gene2220	NA	NA
UHGV-2100651_33	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-2100651_34	PHROG	phrog_3219	NA	unknown function
UHGV-2100651_34	UniRef90	UniRef90_UPI001C10B15D	transcriptional regulator	NA
UHGV-2100651_34	eggNOG-mapper	290402.Cbei_1639	NA	NA
UHGV-2100651_34	Structural annotation	PF03420, TIGR01543, COG3566	NA	NA
UHGV-2100651_35	PHROG	phrog_122	head decoration	head and packaging
UHGV-2100651_35	UniRef90	UniRef90_UPI001D01A855	NA	NA
UHGV-2100651_35	eggNOG-mapper	632292.Calhy_0765	NA	NA
UHGV-2100651_35	Pfam	PF09956	NA	DUF2190
UHGV-2100651_36	PHROG	phrog_3116	NA	unknown function
UHGV-2100651_36	UniRef90	UniRef90_UPI001D010E07	aspartate ammonia-lyase	NA
UHGV-2100651_36	eggNOG-mapper	293826.Amet_2574	NA	NA
UHGV-2100651_36	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2100651_37	PHROG	phrog_3029	NA	unknown function
UHGV-2100651_37	eggNOG-mapper	697281.Mahau_0576	NA	NA
UHGV-2100651_38	PHROG	phrog_2405	NA	unknown function
UHGV-2100651_38	eggNOG-mapper	1196323.ALKF01000160_gene5090	NA	NA
UHGV-2100651_38	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-2100651_39	eggNOG-mapper	290402.Cbei_1644	Phage virion morphogenesis	NA
UHGV-2100651_39	COG	COG5005	NA	NA
UHGV-2100651_39	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-2100651_40	PHROG	phrog_2146	NA	unknown function
UHGV-2100651_40	eggNOG-mapper	1196323.ALKF01000160_gene5091	NA	NA
UHGV-2100651_40	Structural annotation	PF20765, PF11367, COG5003	NA	NA
UHGV-2100651_41	PHROG	phrog_1939	NA	unknown function
UHGV-2100651_41	eggNOG-mapper	1121346.KB899820_gene2852	NA	NA
UHGV-2100651_42	PHROG	phrog_279	tail sheath	tail
UHGV-2100651_42	UniRef90	UniRef90_A0A1M6HLX0	Phage tail sheath protein	NA
UHGV-2100651_42	eggNOG-mapper	1196323.ALKF01000160_gene5093	Phage tail sheath C-terminal domain	NA
UHGV-2100651_42	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-2100651_42	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2100651_42	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2100651_42	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-2100651_43	PHROG	phrog_365	tail protein	tail
UHGV-2100651_43	UniRef90	UniRef90_A0A1M6HLU8	Phage tail tube protein	NA
UHGV-2100651_43	eggNOG-mapper	1211814.CAPG01000027_gene1317	Phage tail tube protein	NA
UHGV-2100651_43	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2100651_43	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2100651_44	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2100651_44	UniRef90	UniRef90_A0A1M6HLR0	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2100651_44	eggNOG-mapper	696281.Desru_3500	XkdN-like protein	NA
UHGV-2100651_44	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2100651_44	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-2100651_45	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2100651_45	UniRef90	UniRef90_H3K6R9	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-2100651_45	eggNOG-mapper	485916.Dtox_4245	tape measure	NA
UHGV-2100651_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2100651_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2100651_45	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2100651_45	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-2100651_46	PHROG	phrog_380	endolysin	lysis
UHGV-2100651_46	UniRef90	UniRef90_H3K6R8	LysM domain-containing protein	NA
UHGV-2100651_46	eggNOG-mapper	485916.Dtox_4246	protein containing LysM domain	NA
UHGV-2100651_46	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2100651_47	PHROG	phrog_400	tail protein	tail
UHGV-2100651_47	UniRef90	UniRef90_A0A4V2WMM6	Phage portal protein	NA
UHGV-2100651_47	eggNOG-mapper	485916.Dtox_4247	NA	NA
UHGV-2100651_47	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2100651_48	UniRef90	UniRef90_UPI001D008233	NA	NA
UHGV-2100651_49	PHROG	phrog_120	baseplate protein	tail
UHGV-2100651_49	UniRef90	UniRef90_UPI001D031C40	NA	NA
UHGV-2100651_49	eggNOG-mapper	696281.Desru_3494	NA	NA
UHGV-2100651_49	Pfam	PF10934	NA	DUF2634
UHGV-2100651_49	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2100651_50	PHROG	phrog_6	baseplate protein	tail
UHGV-2100651_50	UniRef90	UniRef90_UPI001D01ECE8	baseplate J/gp47 family protein	NA
UHGV-2100651_50	eggNOG-mapper	696281.Desru_3493	PFAM Baseplate	NA
UHGV-2100651_50	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2100651_50	COG	COG3299	NA	NA
UHGV-2100651_50	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2100651_51	PHROG	phrog_521	tail protein	tail
UHGV-2100651_51	UniRef90	UniRef90_UPI0018739AB4	NA	NA
UHGV-2100651_51	eggNOG-mapper	1033737.CAEV01000076_gene495	NA	NA
UHGV-2100651_51	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2100651_51	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2100651_51	Structural annotation	PF10076, COG3778	NA	NA
UHGV-2100651_52	PHROG	phrog_7037	tail fiber protein	tail
UHGV-2100651_52	UniRef90	UniRef90_UPI00195EB260	phage tail protein	NA
UHGV-2100651_52	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2100651_52	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2100651_52	Structural annotation	PF12571	NA	NA