UHGV-2100774

Genome information

Genome length 37,026 bps

CDS count 56

Completeness 91.77% (high-quality)

geNomad score 0.9732

Prediction confidence Confident

Genome information
Genome ID	UHGV-2100774
vOTU ID	vOTU-014523
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029556\|Ga0244975_100295\|provirus_62589_99614
BioSample	SAMEA3708819
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.77% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9732
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.33
Jumbo phage	No

Genome content
Genome length	37,026 bps
GC content	43.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.83%
Average CDS length	603.21 bps
tRNA count	1
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2100774_1	KOfam	K03780	ttdB; L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]	NA
UHGV-2100774_1	UniRef90	UniRef90_R5IL38	Fumerase_C domain-containing protein	NA
UHGV-2100774_1	eggNOG-mapper	411461.DORFOR_00218	COG COG1838 Tartrate dehydratase beta subunit Fumarate hydratase class I, C-terminal domain	NA
UHGV-2100774_1	Pfam	PF05683	Fumarase C-terminus	Fumerase_C
UHGV-2100774_1	NCBIFam	NF006082.0	L(+)-tartrate dehydratase subunit beta	NA
UHGV-2100774_1	COG	COG1838	Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain	NA
UHGV-2100774_2	KOfam	K14059	int; integrase	NA
UHGV-2100774_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2100774_2	UniRef90	UniRef90_N9YSK7	Tyr recombinase domain-containing protein	NA
UHGV-2100774_2	eggNOG-mapper	1232453.BAIF02000010_gene3323	Phage integrase family	NA
UHGV-2100774_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2100774_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2100774_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2100774_3	PHROG	phrog_37898	NA	unknown function
UHGV-2100774_3	UniRef90	UniRef90_A0A8I0A9U4	NA	NA
UHGV-2100774_3	eggNOG-mapper	877414.ATWA01000082_gene1189	NA	NA
UHGV-2100774_3	Structural annotation	PF10387	NA	NA
UHGV-2100774_4	PHROG	phrog_14333	NA	unknown function
UHGV-2100774_4	UniRef90	UniRef90_UPI001C0F7873	NA	NA
UHGV-2100774_4	eggNOG-mapper	1124982.MSI_07850	NA	NA
UHGV-2100774_4	Pfam	PF13711	NA	DUF4160
UHGV-2100774_4	Structural annotation	PF13711	NA	NA
UHGV-2100774_6	UniRef90	UniRef90_UPI001D032E3A	NA	NA
UHGV-2100774_6	eggNOG-mapper	657322.FPR_11180	NA	NA
UHGV-2100774_6	Pfam	PF13711	NA	DUF4160
UHGV-2100774_7	eggNOG-mapper	1124982.MSI_9430	NA	NA
UHGV-2100774_8	UniRef90	UniRef90_UPI001EDCCFB6	phage minor capsid protein	NA
UHGV-2100774_8	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-2100774_9	PHROG	phrog_20886	NA	unknown function
UHGV-2100774_9	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-2100774_9	Structural annotation	PF06114	NA	NA
UHGV-2100774_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2100774_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2100774_10	UniRef90	UniRef90_A0A3R6JN44	XRE family transcriptional regulator	NA
UHGV-2100774_10	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2100774_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2100774_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2100774_10	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG3655	NA	NA
UHGV-2100774_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2100774_11	UniRef90	UniRef90_A0A416D9F1	XRE family transcriptional regulator	NA
UHGV-2100774_11	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-2100774_11	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2100774_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2100774_11	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2100774_12	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2100774_12	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-2100774_12	UniRef90	UniRef90_UPI0009D68101	ORF6C domain-containing protein	NA
UHGV-2100774_12	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-2100774_12	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2100774_12	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2100774_12	COG	COG3617	Prophage antirepressor	NA
UHGV-2100774_12	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-2100774_15	PHROG	phrog_3777	NA	unknown function
UHGV-2100774_15	UniRef90	UniRef90_A0A3R6RW84	NA	NA
UHGV-2100774_15	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-2100774_15	Pfam	PF12957	NA	DUF3846
UHGV-2100774_15	Structural annotation	PF12957	NA	NA
UHGV-2100774_16	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2100774_16	UniRef90	UniRef90_A0A412YTC0	Recombinase	NA
UHGV-2100774_16	eggNOG-mapper	742740.HMPREF9474_03486	YqaJ viral recombinase family	NA
UHGV-2100774_16	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2100774_16	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2100774_16	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2100774_16	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2100774_17	PHROG	phrog_674	NA	unknown function
UHGV-2100774_17	UniRef90	UniRef90_A0A417UIF1	NA	NA
UHGV-2100774_17	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-2100774_17	Pfam	PF07083	NA	DUF1351
UHGV-2100774_17	Structural annotation	PF07083	NA	NA
UHGV-2100774_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2100774_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2100774_18	UniRef90	UniRef90_UPI0009D67E94	recombinase RecT	NA
UHGV-2100774_18	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-2100774_18	Pfam	PF03837	RecT family	RecT
UHGV-2100774_18	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2100774_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2100774_19	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2100774_19	UniRef90	UniRef90_A0A417AC21	Replication terminator protein	NA
UHGV-2100774_19	eggNOG-mapper	1231336.L248_2133	NA	NA
UHGV-2100774_20	PHROG	phrog_1029	NA	unknown function
UHGV-2100774_20	UniRef90	UniRef90_E7GRE5	NA	NA
UHGV-2100774_20	eggNOG-mapper	742740.HMPREF9474_03490	NA	NA
UHGV-2100774_20	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2100774_21	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2100774_21	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-2100774_22	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2100774_22	UniRef90	UniRef90_UPI000462AB4A	NA	NA
UHGV-2100774_22	eggNOG-mapper	1196322.A370_04251	NA	NA
UHGV-2100774_22	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2100774_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2100774_22	Structural annotation	PF14297	NA	NA
UHGV-2100774_23	PHROG	phrog_15077	NA	unknown function
UHGV-2100774_23	eggNOG-mapper	1235793.C809_02408	NA	NA
UHGV-2100774_24	PHROG	phrog_15077	NA	unknown function
UHGV-2100774_24	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-2100774_29	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2100774_29	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2100774_29	UniRef90	UniRef90_A0A7X5CLJ7	Adenylyl-sulfate reductase	NA
UHGV-2100774_29	eggNOG-mapper	411490.ANACAC_02386	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2100774_29	PADLOC	BrxP_00001	BrxP	BREX
UHGV-2100774_29	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2100774_29	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2100774_29	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-2100774_33	PHROG	phrog_16126	NA	unknown function
UHGV-2100774_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2100774_34	UniRef90	UniRef90_A0A417C341	RNA polymerase subunit sigma-70	NA
UHGV-2100774_34	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-2100774_34	Structural annotation	PF02996	NA	NA
UHGV-2100774_35	Structural annotation	PF04381, MF_00194, NF001460, COG2974	NA	NA
UHGV-2100774_36	UniRef90	UniRef90_UPI0015704FD2	NA	NA
UHGV-2100774_36	Structural annotation	PF19363, PF04471, COG1787, COG3355	NA	NA
UHGV-2100774_37	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2100774_37	UniRef90	UniRef90_R5J299	Phage terminase small subunit	NA
UHGV-2100774_37	eggNOG-mapper	1449050.JNLE01000003_gene3896	DNA packaging	NA
UHGV-2100774_37	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2100774_37	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2100774_37	COG	COG5484	NA	NA
UHGV-2100774_37	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-2100774_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2100774_38	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2100774_38	UniRef90	UniRef90_R5ILS3	Phage terminase large subunit PBSX family	NA
UHGV-2100774_38	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-2100774_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2100774_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-2100774_38	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2100774_39	PHROG	phrog_533	portal protein	head and packaging
UHGV-2100774_39	UniRef90	UniRef90_A0A396QLL8	Phage portal protein	NA
UHGV-2100774_39	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-2100774_39	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2100774_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2100774_40	UniRef90	UniRef90_UPI001593C099	minor capsid protein	NA
UHGV-2100774_40	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-2100774_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2100774_40	COG	COG2369	NA	NA
UHGV-2100774_40	Structural annotation	PF06152, PF04002	NA	NA
UHGV-2100774_41	PHROG	phrog_30750	NA	unknown function
UHGV-2100774_42	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2100774_42	UniRef90	UniRef90_UPI000E449396	phage scaffolding protein	NA
UHGV-2100774_42	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-2100774_42	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2100774_42	Structural annotation	PF06810	NA	NA
UHGV-2100774_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-2100774_43	UniRef90	UniRef90_A0A3R6X865	Phage major capsid protein	NA
UHGV-2100774_43	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-2100774_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2100774_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2100774_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2100774_43	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2100774_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2100774_44	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-2100774_45	PHROG	phrog_3366	NA	unknown function
UHGV-2100774_45	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-2100774_45	Pfam	PF20536	NA	DUF6751
UHGV-2100774_45	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2100774_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2100774_46	UniRef90	UniRef90_UPI0015948E32	minor capsid protein	NA
UHGV-2100774_46	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-2100774_46	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2100774_46	Structural annotation	PF11114	NA	NA
UHGV-2100774_47	PHROG	phrog_3266	tail completion	connector
UHGV-2100774_47	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-2100774_47	Structural annotation	PF20765	NA	NA
UHGV-2100774_48	PHROG	phrog_3099	NA	unknown function
UHGV-2100774_48	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-2100774_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2100774_49	PHROG	phrog_11299	NA	unknown function
UHGV-2100774_49	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-2100774_49	Structural annotation	PF10666	NA	NA
UHGV-2100774_50	PHROG	phrog_706	NA	unknown function
UHGV-2100774_50	UniRef90	UniRef90_UPI0011DC8B0C	Gp15 family bacteriophage protein	NA
UHGV-2100774_50	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-2100774_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2100774_50	Structural annotation	PF06854	NA	NA
UHGV-2100774_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2100774_51	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-2100774_51	COG	COG5283	Phage-related tail protein	NA
UHGV-2100774_51	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2100774_52	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2100774_52	PHROG	phrog_1	integrase	integration and excision
UHGV-2100774_52	UniRef90	UniRef90_UPI00195C57FB	tyrosine-type recombinase/integrase	NA
UHGV-2100774_52	eggNOG-mapper	742735.HMPREF9467_00725	Belongs to the 'phage' integrase family	NA
UHGV-2100774_52	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2100774_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2100774_52	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2100774_52	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2100774_53	UniRef90	UniRef90_A0A417WCN8	Acyl carrier protein	NA
UHGV-2100774_53	eggNOG-mapper	411902.CLOBOL_05646	NA	NA
UHGV-2100774_53	Structural annotation	PF14301	NA	NA
UHGV-2100774_54	PHROG	phrog_20274	NA	unknown function
UHGV-2100774_54	UniRef90	UniRef90_D7GNX6	Predicted membrane protein	NA
UHGV-2100774_54	eggNOG-mapper	411902.CLOBOL_05645	NA	NA
UHGV-2100774_54	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-2100774_54	COG	COG4905	NA	NA
UHGV-2100774_54	Structural annotation	PF06541, COG4905	NA	NA
UHGV-2100774_55	PHROG	phrog_4105	NA	unknown function
UHGV-2100774_55	eggNOG-mapper	1321782.HMPREF1986_02281	NA	NA
UHGV-2100774_56	PHROG	phrog_1129	holin	lysis
UHGV-2100774_56	UniRef90	UniRef90_A0A3R6U6I1	Enolase	NA
UHGV-2100774_56	eggNOG-mapper	1321782.HMPREF1986_00360	NA	NA
UHGV-2100774_56	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2100774_56	Structural annotation	PF06946	NA	NA