UHGV-2101469

Genome information

Genome length 37,066 bps

CDS count 41

Completeness 84.88% (medium-quality)

geNomad score 0.9576

Prediction confidence Confident

Genome information
Genome ID	UHGV-2101469
vOTU ID	vOTU-029414
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029573\|Ga0245101_100113\|provirus_36984_74049
BioSample	SAMEA3449153
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9576
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.62
Jumbo phage	No

Genome content
Genome length	37,066 bps
GC content	53.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	92.53%
Average CDS length	843.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2101469_1	KOfam	K14059	int; integrase	NA
UHGV-2101469_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2101469_1	UniRef90	UniRef90_UPI001F415E86	tyrosine-type recombinase/integrase	NA
UHGV-2101469_1	eggNOG-mapper	457415.HMPREF1006_01800	DNA integration	NA
UHGV-2101469_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2101469_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2101469_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2101469_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2101469_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2101469_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2101469_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2101469_2	UniRef90	UniRef90_G9PTA8	HTH cro/C1-type domain-containing protein	NA
UHGV-2101469_2	eggNOG-mapper	457415.HMPREF1006_01801	Helix-turn-helix domain	NA
UHGV-2101469_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2101469_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2101469_3	UniRef90	UniRef90_UPI001D10F2EF	helix-turn-helix domain-containing protein	NA
UHGV-2101469_4	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2101469_4	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2101469_4	UniRef90	UniRef90_G9PTB0	Phage/plasmid primase, P4 family domain-containing protein	NA
UHGV-2101469_4	eggNOG-mapper	457415.HMPREF1006_01803	D5 N terminal like	NA
UHGV-2101469_4	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2101469_4	Pfam	PF19263	NA	DUF5906
UHGV-2101469_4	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2101469_4	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2101469_4	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2101469_4	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-2101469_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-2101469_5	UniRef90	UniRef90_UPI001F32DF03	phage portal protein	NA
UHGV-2101469_5	eggNOG-mapper	457415.HMPREF1006_01804	Portal protein	NA
UHGV-2101469_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2101469_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2101469_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2101469_6	KOfam	K06904	NA	NA
UHGV-2101469_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-2101469_6	UniRef90	UniRef90_UPI001F2933C4	phage major capsid protein	NA
UHGV-2101469_6	eggNOG-mapper	457415.HMPREF1006_01805	Phage capsid family	NA
UHGV-2101469_6	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2101469_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2101469_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2101469_6	COG	COG3740	Phage head maturation protease	NA
UHGV-2101469_6	Structural annotation	PF04586, PF05065, MF_04119, TIGR01554, TIGR01543, COG3740, COG4653	NA	NA
UHGV-2101469_7	UniRef90	UniRef90_UPI001F379D96	head-tail connector protein	NA
UHGV-2101469_7	eggNOG-mapper	1167632.AJTR01000015_gene1285	NA	NA
UHGV-2101469_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2101469_8	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2101469_8	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2101469_8	UniRef90	UniRef90_A0A7W8CYD2	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2101469_8	eggNOG-mapper	457415.HMPREF1006_01807	endonuclease activity	NA
UHGV-2101469_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2101469_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2101469_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2101469_11	UniRef90	UniRef90_UPI001F39D84F	terminase large subunit	NA
UHGV-2101469_11	eggNOG-mapper	457415.HMPREF1006_01809	Terminase	NA
UHGV-2101469_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2101469_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2101469_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2101469_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2101469_12	PHROG	phrog_25	head closure Hc1	connector
UHGV-2101469_12	UniRef90	UniRef90_J9G4H9	Phage head-tail joining	NA
UHGV-2101469_12	eggNOG-mapper	457415.HMPREF1006_01810	Phage head-tail joining protein	NA
UHGV-2101469_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2101469_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2101469_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2101469_13	eggNOG-mapper	1144319.PMI16_03822	NA	NA
UHGV-2101469_13	PADLOC	REase_II_00185	Type II restriction enzyme	RM
UHGV-2101469_14	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2101469_14	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2101469_14	UniRef90	UniRef90_UPI00168BCF10	site-specific DNA-methyltransferase	NA
UHGV-2101469_14	eggNOG-mapper	657309.BXY_41150	N-4 methylation of cytosine	NA
UHGV-2101469_14	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2101469_14	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2101469_14	COG	COG0863	DNA modification methylase	NA
UHGV-2101469_14	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2101469_15	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2101469_15	UniRef90	UniRef90_A0A3E3K3E4	XRE family transcriptional regulator	NA
UHGV-2101469_15	eggNOG-mapper	397290.C810_01669	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2101469_15	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2101469_15	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2101469_15	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2101469_16	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2101469_16	PHROG	phrog_95	integrase	integration and excision
UHGV-2101469_16	UniRef90	UniRef90_A0A1Q6PTR3	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-2101469_16	eggNOG-mapper	1519439.JPJG01000083_gene441	Resolvase, N terminal domain	NA
UHGV-2101469_16	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2101469_16	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2101469_17	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2101469_17	PHROG	phrog_95	integrase	integration and excision
UHGV-2101469_17	UniRef90	UniRef90_A0A1Q6PU52	Recombinase family protein	NA
UHGV-2101469_17	eggNOG-mapper	1203606.HMPREF1526_00579	Resolvase, N terminal domain	NA
UHGV-2101469_17	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2101469_17	Pfam	PF07508	Recombinase	Recombinase
UHGV-2101469_17	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2101469_17	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2101469_17	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2101469_18	PHROG	phrog_2996	NA	unknown function
UHGV-2101469_18	eggNOG-mapper	1203606.HMPREF1526_00580	NA	NA
UHGV-2101469_18	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-2101469_18	Structural annotation	PF20612	NA	NA
UHGV-2101469_20	KOfam	K22519	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	NA
UHGV-2101469_20	PHROG	phrog_2649	endolysin	lysis
UHGV-2101469_20	UniRef90	UniRef90_A0A1Q6PTR5	PG_binding_1 domain-containing protein	NA
UHGV-2101469_20	eggNOG-mapper	871963.Desdi_1346	NLP P60 protein	NA
UHGV-2101469_20	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2101469_20	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2101469_20	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2101469_20	Structural annotation	PF01471, PF19087, NF041850, TIGR02219, COG3409, COG3103, COG0791	NA	NA
UHGV-2101469_21	PHROG	phrog_199	holin	lysis
UHGV-2101469_21	UniRef90	UniRef90_A0A1Q6PTT3	Holin	NA
UHGV-2101469_21	eggNOG-mapper	1203606.HMPREF1526_00583	toxin secretion phage lysis holin	NA
UHGV-2101469_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2101469_21	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2101469_21	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2101469_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2101469_22	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2101469_22	COG	COG3397	Predicted carbohydrate-binding protein, contains CBM5 and CBM33 domains	NA
UHGV-2101469_23	Structural annotation	PF09792, NF033679	NA	NA
UHGV-2101469_24	PHROG	phrog_372	tail protein	tail
UHGV-2101469_24	UniRef90	UniRef90_UPI001F1AF627	NA	NA
UHGV-2101469_24	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-2101469_24	Pfam	PF05895	NA	DUF859
UHGV-2101469_24	COG	COG4675	Phage tail collar domain	NA
UHGV-2101469_24	Structural annotation	PF05895, MF_04116, NF010681, NF012201, COG3291	NA	NA
UHGV-2101469_25	eggNOG-mapper	556261.HMPREF0240_01281	cellulase activity	NA
UHGV-2101469_25	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2101469_26	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2101469_26	UniRef90	UniRef90_A0A1Q6PU45	SH3b domain-containing protein	NA
UHGV-2101469_26	eggNOG-mapper	386415.NT01CX_2159	Phage minor structural protein	NA
UHGV-2101469_26	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2101469_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2101469_26	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2101469_26	COG	COG4926	Phage-related protein	NA
UHGV-2101469_26	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2101469_27	PHROG	phrog_1204	tail protein	tail
UHGV-2101469_27	UniRef90	UniRef90_A0A1Q6PTR6	Phage tail tape measure protein	NA
UHGV-2101469_27	eggNOG-mapper	665956.HMPREF1032_02942	Phage tail tape measure protein TP901	NA
UHGV-2101469_27	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2101469_28	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-2101469_28	UniRef90	UniRef90_A0A1Q6PTP1	Transcriptional regulator	NA
UHGV-2101469_28	eggNOG-mapper	755731.Clo1100_3608	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2101469_28	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2101469_28	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2101469_28	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2101469_28	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-2101469_29	PHROG	phrog_21057	NA	unknown function
UHGV-2101469_29	eggNOG-mapper	1286171.EAL2_c05670	NA	NA
UHGV-2101469_29	Structural annotation	PF13451	NA	NA
UHGV-2101469_30	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2101469_30	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2101469_30	UniRef90	UniRef90_A0A1Q6PTN2	POLAc domain-containing protein	NA
UHGV-2101469_30	eggNOG-mapper	1408437.JNJN01000033_gene2201	DNA polymerase	NA
UHGV-2101469_30	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2101469_30	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2101469_30	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2101469_32	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2101469_32	UniRef90	UniRef90_A0A2V2FVS9	NA	NA
UHGV-2101469_32	eggNOG-mapper	457415.HMPREF1006_00442	NA	NA
UHGV-2101469_32	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2101469_32	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2101469_33	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2101469_33	UniRef90	UniRef90_A0A1Q6PTN6	Nuclease	NA
UHGV-2101469_33	eggNOG-mapper	742741.HMPREF9475_02396	NA	NA
UHGV-2101469_33	Pfam	PF10926	NA	DUF2800
UHGV-2101469_33	COG	COG2887	RecB family exonuclease	NA
UHGV-2101469_33	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2101469_34	PHROG	phrog_408	NA	unknown function
UHGV-2101469_34	UniRef90	UniRef90_A0A2V2FUE3	DNA ligase	NA
UHGV-2101469_34	eggNOG-mapper	457415.HMPREF1006_00440	NA	NA
UHGV-2101469_35	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-2101469_37	PHROG	phrog_4031	NA	unknown function
UHGV-2101469_37	UniRef90	UniRef90_A0A1V4VK31	Peptidase_M78 domain-containing protein	NA
UHGV-2101469_37	eggNOG-mapper	397288.C806_00730	Zn peptidase	NA
UHGV-2101469_37	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2101469_37	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2101469_37	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2101469_38	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2101469_38	UniRef90	UniRef90_A0A1V4VK30	Helix-turn-helix domain protein	NA
UHGV-2101469_38	eggNOG-mapper	158190.SpiGrapes_2862	sequence-specific DNA binding	NA
UHGV-2101469_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2101469_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2101469_38	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-2101469_39	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2101469_39	UniRef90	UniRef90_A0A2A5LHP2	XRE family transcriptional regulator	NA
UHGV-2101469_39	eggNOG-mapper	485916.Dtox_1528	NA	NA
UHGV-2101469_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2101469_39	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2101469_39	Structural annotation	PF13443, MF_00535, NF000090, COG3655	NA	NA
UHGV-2101469_40	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2101469_40	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2101469_40	UniRef90	UniRef90_A0A1V4VKZ1	Methyltransferase	NA
UHGV-2101469_40	eggNOG-mapper	290315.Clim_1593	N-4 methylation of cytosine	NA
UHGV-2101469_40	PADLOC	MTase_II_00109	Type II methyltransferase	RM
UHGV-2101469_40	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2101469_40	COG	COG0863	DNA modification methylase	NA
UHGV-2101469_40	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2101469_41	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2101469_41	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2101469_41	UniRef90	UniRef90_A0A1V4VMI8	Methyltransferase	NA
UHGV-2101469_41	eggNOG-mapper	946483.Cenrod_2479	DNA methylase	NA
UHGV-2101469_41	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2101469_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2101469_41	COG	COG0863	DNA modification methylase	NA
UHGV-2101469_41	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA