UHGV-2101495

Genome information

Genome length 26,966 bps

CDS count 41

Completeness 72.11% (medium-quality)

geNomad score 0.9334

Prediction confidence Confident

Genome information
Genome ID	UHGV-2101495
vOTU ID	vOTU-017356
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029523\|Ga0244821_100025\|provirus_3_26968
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9334
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.7
Jumbo phage	No

Genome content
Genome length	26,966 bps
GC content	63.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	86.99%
Average CDS length	575.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2101495_1	eggNOG-mapper	1297617.JPJD01000099_gene2174	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2101495_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2101495_2	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2101495_4	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-2101495_4	PHROG	phrog_5073	tail fiber protein	tail
UHGV-2101495_4	UniRef90	UniRef90_A0A0S2W5N8	Phage tail fiber protein	NA
UHGV-2101495_4	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-2101495_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2101495_4	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2101495_5	PHROG	phrog_134	NA	unknown function
UHGV-2101495_5	UniRef90	UniRef90_A0A3E2WBQ5	XkdX family protein	NA
UHGV-2101495_5	eggNOG-mapper	1297617.JPJD01000099_gene2170	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2101495_5	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2101495_5	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-2101495_5	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2101495_6	eggNOG-mapper	1297617.JPJD01000034_gene669	NA	NA
UHGV-2101495_7	PHROG	phrog_19111	NA	unknown function
UHGV-2101495_7	eggNOG-mapper	1297617.JPJD01000034_gene670	NA	NA
UHGV-2101495_7	Structural annotation	PF13859, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-2101495_8	PHROG	phrog_17472	tail protein	tail
UHGV-2101495_8	UniRef90	UniRef90_A0A0S2W0Q3	Glycoprotein gp2	NA
UHGV-2101495_8	eggNOG-mapper	1297617.JPJD01000059_gene2615	NA	NA
UHGV-2101495_9	PHROG	phrog_521	tail protein	tail
UHGV-2101495_9	UniRef90	UniRef90_UPI00068242A7	NA	NA
UHGV-2101495_9	eggNOG-mapper	1297617.JPJD01000059_gene2616	NA	NA
UHGV-2101495_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2101495_9	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2101495_9	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2101495_10	PHROG	phrog_6	baseplate protein	tail
UHGV-2101495_10	UniRef90	UniRef90_A0A0S2W163	Phage baseplate	NA
UHGV-2101495_10	eggNOG-mapper	1297617.JPJD01000059_gene2617	Baseplate J-like protein	NA
UHGV-2101495_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2101495_10	COG	COG3299	NA	NA
UHGV-2101495_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2101495_11	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-2101495_11	eggNOG-mapper	1121344.JHZO01000003_gene963	tape measure	NA
UHGV-2101495_11	COG	COG5281	Phage-related minor tail protein	NA
UHGV-2101495_12	UniRef90	UniRef90_UPI00051AEC83	NA	NA
UHGV-2101495_12	eggNOG-mapper	748727.CLJU_c36120	NA	NA
UHGV-2101495_12	Pfam	PF20037	NA	DUF6440
UHGV-2101495_13	UniRef90	UniRef90_A0A0S2W0L3	NA	NA
UHGV-2101495_13	eggNOG-mapper	748727.CLJU_c36120	NA	NA
UHGV-2101495_13	Pfam	PF20037	NA	DUF6440
UHGV-2101495_14	UniRef90	UniRef90_A0A0S2W0Y7	NA	NA
UHGV-2101495_14	eggNOG-mapper	748727.CLJU_c36120	NA	NA
UHGV-2101495_14	Pfam	PF20037	NA	DUF6440
UHGV-2101495_15	PHROG	phrog_120	baseplate protein	tail
UHGV-2101495_15	UniRef90	UniRef90_A0A0S2W0M2	Phage-like element PBSX protein xkdS	NA
UHGV-2101495_15	eggNOG-mapper	1297617.JPJD01000059_gene2620	NA	NA
UHGV-2101495_15	Pfam	PF10934	NA	DUF2634
UHGV-2101495_15	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2101495_15	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-2101495_16	PHROG	phrog_579	NA	unknown function
UHGV-2101495_16	UniRef90	UniRef90_UPI00164D1FA6	NA	NA
UHGV-2101495_16	eggNOG-mapper	1449050.JNLE01000005_gene4833	NA	NA
UHGV-2101495_16	Pfam	PF10844	NA	DUF2577
UHGV-2101495_16	Structural annotation	PF10844, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-2101495_17	PHROG	phrog_400	tail protein	tail
UHGV-2101495_17	UniRef90	UniRef90_A0A0S2W0W9	Phage-like element PBSX protein xkdQ	NA
UHGV-2101495_17	eggNOG-mapper	1297617.JPJD01000059_gene2622	PFAM Phage late control gene D protein (GPD)	NA
UHGV-2101495_17	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-2101495_18	KOfam	K21687	rpfA; resuscitation-promoting factor RpfA	NA
UHGV-2101495_18	PHROG	phrog_380	endolysin	lysis
UHGV-2101495_18	UniRef90	UniRef90_A0A0S2W0K5	Phage-like element PBSX protein xkdP	NA
UHGV-2101495_18	eggNOG-mapper	1297617.JPJD01000059_gene2623	LysM domain	NA
UHGV-2101495_18	Pfam	PF01476	LysM domain	LysM
UHGV-2101495_18	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2101495_18	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-2101495_20	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-2101495_20	UniRef90	UniRef90_A0A1M6M4G9	Tape measure domain-containing protein	NA
UHGV-2101495_20	eggNOG-mapper	1121344.JHZO01000003_gene963	tape measure	NA
UHGV-2101495_20	COG	COG5281	Phage-related minor tail protein	NA
UHGV-2101495_21	UniRef90	UniRef90_UPI00051AF931	NA	NA
UHGV-2101495_21	eggNOG-mapper	748727.CLJU_c36120	NA	NA
UHGV-2101495_21	Pfam	PF20037	NA	DUF6440
UHGV-2101495_22	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2101495_22	UniRef90	UniRef90_A0A0S2W0P7	NA	NA
UHGV-2101495_22	eggNOG-mapper	1297617.JPJD01000059_gene2626	PFAM Phage XkdN-like protein	NA
UHGV-2101495_22	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2101495_22	Structural annotation	PF08890, COG4518	NA	NA
UHGV-2101495_23	PHROG	phrog_365	tail protein	tail
UHGV-2101495_23	UniRef90	UniRef90_A0A0S2W0N6	Phage tail fiber protein	NA
UHGV-2101495_23	eggNOG-mapper	1297617.JPJD01000059_gene2627	Phage tail tube protein	NA
UHGV-2101495_23	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2101495_23	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-2101495_24	PHROG	phrog_279	tail sheath	tail
UHGV-2101495_24	UniRef90	UniRef90_A0A0S2W0K2	Phage-like element PBSX protein xkdK	NA
UHGV-2101495_24	eggNOG-mapper	1297617.JPJD01000059_gene2628	Phage tail sheath C-terminal domain	NA
UHGV-2101495_24	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-2101495_24	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2101495_24	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2101495_24	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-2101495_25	PHROG	phrog_966	NA	unknown function
UHGV-2101495_26	PHROG	phrog_525	NA	unknown function
UHGV-2101495_26	eggNOG-mapper	1297617.JPJD01000059_gene2630	NA	NA
UHGV-2101495_26	Pfam	PF20765	NA	DUF6838
UHGV-2101495_26	Structural annotation	PF20765, COG5003	NA	NA
UHGV-2101495_27	PHROG	phrog_615	head-tail adaptor	connector
UHGV-2101495_27	UniRef90	UniRef90_UPI001958CF31	ABC transporter ATP-binding protein	NA
UHGV-2101495_27	eggNOG-mapper	1226322.HMPREF1545_04046	NA	NA
UHGV-2101495_27	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2101495_28	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2101495_28	UniRef90	UniRef90_UPI0006821A34	phage head-tail connector protein	NA
UHGV-2101495_28	eggNOG-mapper	1297617.JPJD01000059_gene2632	NA	NA
UHGV-2101495_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2101495_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2101495_29	PHROG	phrog_283	major head protein	head and packaging
UHGV-2101495_29	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-2101495_29	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-2101495_29	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2101495_29	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2101495_30	UniRef90	UniRef90_A0A1M6M3Z1	Phage minor structural protein GP20	NA
UHGV-2101495_31	PHROG	phrog_9064	portal protein	head and packaging
UHGV-2101495_31	UniRef90	UniRef90_A0A847NUD4	Phage portal protein	NA
UHGV-2101495_31	eggNOG-mapper	1297617.JPJD01000059_gene2635	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2101495_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2101495_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-2101495_32	UniRef90	UniRef90_A0A0S2W0K9	Phage portal protein	NA
UHGV-2101495_32	eggNOG-mapper	1297617.JPJD01000059_gene2635	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2101495_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2101495_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2101495_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2101495_33	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2101495_33	UniRef90	UniRef90_A0A0S2W1H5	Terminase large subunit	NA
UHGV-2101495_33	eggNOG-mapper	1297617.JPJD01000059_gene2636	Terminase RNAseH like domain	NA
UHGV-2101495_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2101495_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2101495_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-2101495_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2101495_36	PHROG	phrog_33570	NA	unknown function
UHGV-2101495_36	UniRef90	UniRef90_UPI00164D639C	tape measure protein	NA
UHGV-2101495_36	eggNOG-mapper	1297617.JPJD01000059_gene2639	tape measure	NA
UHGV-2101495_36	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2101495_37	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-2101495_37	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-2101495_39	PHROG	phrog_16304	NA	unknown function
UHGV-2101495_39	UniRef90	UniRef90_A0A0S2W0H5	NA	NA
UHGV-2101495_39	eggNOG-mapper	1168289.AJKI01000067_gene1520	NA	NA
UHGV-2101495_39	Pfam	PF19808	NA	DUF6291
UHGV-2101495_41	UniRef90	UniRef90_A0A0S2W0M4	Phage transcriptional regulator, Cro/CI family	NA
UHGV-2101495_41	eggNOG-mapper	1297617.JPJD01000059_gene2644	addiction module antidote protein HigA	NA
UHGV-2101495_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2101495_41	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2101495_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA