UHGV-2101724

Genome information

Genome length 21,822 bps

CDS count 31

Completeness 56.94% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-2101724
vOTU ID	vOTU-041870
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029589\|Ga0245106_100560\|provirus_1_21822
BioSample	SAMEA3449158
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.48
Jumbo phage	No

Genome content
Genome length	21,822 bps
GC content	29.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	91.31%
Average CDS length	645.29 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2101724_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2101724_2	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-2101724_3	PHROG	phrog_9529	NA	unknown function
UHGV-2101724_3	UniRef90	UniRef90_F5RN29	NA	NA
UHGV-2101724_3	eggNOG-mapper	293826.Amet_4043	NA	NA
UHGV-2101724_3	Pfam	PF04480	NA	DUF559
UHGV-2101724_3	COG	COG2852	Very-short-patch-repair endonuclease	NA
UHGV-2101724_3	Structural annotation	PF04480, NF007294, COG2852	NA	NA
UHGV-2101724_6	PHROG	phrog_1233	NA	unknown function
UHGV-2101724_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2101724_8	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2101724_8	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-2101724_8	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-2101724_8	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2101724_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2101724_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-2101724_8	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2101724_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-2101724_9	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-2101724_9	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-2101724_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2101724_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2101724_10	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-2101724_10	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-2101724_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2101724_10	Pfam	PF21814	NA	DUF6883
UHGV-2101724_10	COG	COG2369	NA	NA
UHGV-2101724_10	Structural annotation	PF06152, PF21814	NA	NA
UHGV-2101724_11	UniRef90	UniRef90_A0A4R4FEG5	NA	NA
UHGV-2101724_11	eggNOG-mapper	1200557.JHWV01000022_gene2459	NA	NA
UHGV-2101724_11	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-2101724_12	Structural annotation	PF09871, TIGR00739, COG1862	NA	NA
UHGV-2101724_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2101724_13	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-2101724_13	eggNOG-mapper	1078085.HMPREF1210_01146	Phage minor structural protein GP20	NA
UHGV-2101724_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2101724_13	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2101724_14	PHROG	phrog_212	major head protein	head and packaging
UHGV-2101724_14	UniRef90	UniRef90_A0A416DTJ6	Phage capsid protein	NA
UHGV-2101724_14	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-2101724_14	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2101724_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2101724_15	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-2101724_16	PHROG	phrog_3366	NA	unknown function
UHGV-2101724_16	eggNOG-mapper	632245.CLP_1651	NA	NA
UHGV-2101724_16	Pfam	PF20536	NA	DUF6751
UHGV-2101724_16	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2101724_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2101724_17	UniRef90	UniRef90_A0A174E6U4	Minor capsid	NA
UHGV-2101724_17	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-2101724_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2101724_17	Structural annotation	PF11114	NA	NA
UHGV-2101724_18	PHROG	phrog_3266	tail completion	connector
UHGV-2101724_18	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-2101724_18	eggNOG-mapper	1151292.QEW_4531	NA	NA
UHGV-2101724_18	Structural annotation	PF12691	NA	NA
UHGV-2101724_19	PHROG	phrog_3099	NA	unknown function
UHGV-2101724_19	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-2101724_19	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-2101724_20	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-2101724_20	UniRef90	UniRef90_A0A1M4ZC27	tRNA_anti-like	NA
UHGV-2101724_20	eggNOG-mapper	394503.Ccel_3023	tRNA_anti-like	NA
UHGV-2101724_20	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-2101724_20	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-2101724_22	PHROG	phrog_706	NA	unknown function
UHGV-2101724_22	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-2101724_22	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-2101724_22	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2101724_22	Structural annotation	PF06854	NA	NA
UHGV-2101724_23	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2101724_23	eggNOG-mapper	1499683.CCFF01000014_gene3900	phage tail tape measure protein	NA
UHGV-2101724_23	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2101724_23	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-2101724_24	PHROG	phrog_1194	NA	unknown function
UHGV-2101724_24	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-2101724_25	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-2101724_25	Structural annotation	PF05113, PF09327, NF033848, COG3500	NA	NA
UHGV-2101724_27	PHROG	phrog_5668	tail fiber protein	tail
UHGV-2101724_27	UniRef90	UniRef90_UPI00177BDE11	tail fiber domain-containing protein	NA
UHGV-2101724_27	eggNOG-mapper	573061.Clocel_0796	Phage minor structural protein	NA
UHGV-2101724_27	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2101724_27	COG	COG4926	Phage-related protein	NA
UHGV-2101724_29	PHROG	phrog_199	holin	lysis
UHGV-2101724_29	UniRef90	UniRef90_UPI00085C2E64	phage holin family protein	NA
UHGV-2101724_29	eggNOG-mapper	411902.CLOBOL_03863	COG COG4824 Phage-related holin (Lysis protein)	NA
UHGV-2101724_29	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2101724_29	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2101724_29	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2101724_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2101724_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2101724_30	PHROG	phrog_35436	amidase	lysis
UHGV-2101724_30	UniRef90	UniRef90_A0A352MWM3	Peptidoglycan-binding domain-containing protein	NA
UHGV-2101724_30	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-2101724_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2101724_30	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2101724_30	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2101724_30	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-2101724_31	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2101724_31	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA