UHGV-2101894

Genome information

Genome length 44,636 bps

CDS count 46

Completeness 99.90% (high-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-2101894
vOTU ID	vOTU-011168
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029570\|Ga0244916_100532
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.14
Jumbo phage	No

Genome content
Genome length	44,636 bps
GC content	55.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.92%
Average CDS length	896.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2101894_1	PHROG	phrog_892	tail fiber protein	tail
UHGV-2101894_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2101894_2	PHROG	phrog_22978	NA	unknown function
UHGV-2101894_2	UniRef90	UniRef90_A0A8D9UHE1	PolyVal ADP-ribosyltransferase	NA
UHGV-2101894_2	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-2101894_2	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-2101894_2	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-2101894_2	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-2101894_3	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-2101894_4	PHROG	phrog_8887	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2101894_4	UniRef90	UniRef90_UPI000E4723C2	type II toxin-antitoxin system HicA family toxin	NA
UHGV-2101894_4	eggNOG-mapper	633697.EubceDRAFT1_2398	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2101894_4	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2101894_4	Structural annotation	COG1724	NA	NA
UHGV-2101894_5	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-2101894_5	UniRef90	UniRef90_A0A3D5L1X9	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-2101894_5	eggNOG-mapper	33035.JPJF01000090_gene99	HicB family	NA
UHGV-2101894_5	Pfam	PF05534	HicB family	HicB
UHGV-2101894_5	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-2101894_5	Structural annotation	PF05534, NF041793, COG4226	NA	NA
UHGV-2101894_6	Structural annotation	PF02556, MF_00821, NF004391, COG1952	NA	NA
UHGV-2101894_8	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-2101894_8	eggNOG-mapper	718252.FP2_29250	NA	NA
UHGV-2101894_8	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-2101894_9	KOfam	K07584	NA	NA
UHGV-2101894_9	PHROG	phrog_4478	peptidase	other
UHGV-2101894_9	UniRef90	UniRef90_A0A7V6ZFB1	Ribosomal-processing cysteine protease Prp	NA
UHGV-2101894_9	eggNOG-mapper	592015.HMPREF1705_00791	Cysteine protease Prp	NA
UHGV-2101894_9	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2101894_9	COG	COG2868	NA	NA
UHGV-2101894_9	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2101894_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-2101894_10	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-2101894_10	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-2101894_10	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2101894_11	PHROG	phrog_12105	NA	unknown function
UHGV-2101894_11	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-2101894_12	PHROG	phrog_15239	NA	unknown function
UHGV-2101894_12	eggNOG-mapper	1507.HMPREF0262_03462	NA	NA
UHGV-2101894_13	PHROG	phrog_1357	major head protein	head and packaging
UHGV-2101894_13	UniRef90	UniRef90_A0A1Y3TZT4	N4-gp56 family major capsid protein	NA
UHGV-2101894_13	eggNOG-mapper	411483.FAEPRAA2165_01040	NA	NA
UHGV-2101894_13	Pfam	PF13252	NA	DUF4043
UHGV-2101894_13	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2101894_13	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2101894_14	PHROG	phrog_13908	NA	unknown function
UHGV-2101894_14	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-2101894_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2101894_15	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2101894_15	UniRef90	UniRef90_UPI001EE1BE37	phage terminase large subunit	NA
UHGV-2101894_15	eggNOG-mapper	748224.HMPREF9436_02548	Terminase-like family	NA
UHGV-2101894_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2101894_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-2101894_15	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2101894_18	PHROG	phrog_11237	NA	unknown function
UHGV-2101894_18	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-2101894_21	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2101894_21	eggNOG-mapper	1226322.HMPREF1545_00289	NA	NA
UHGV-2101894_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2101894_23	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2101894_23	UniRef90	UniRef90_A0A4U1D0A0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2101894_23	eggNOG-mapper	742723.HMPREF9477_00924	Endodeoxyribonuclease RusA	NA
UHGV-2101894_23	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2101894_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2101894_23	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2101894_24	PHROG	phrog_16687	NA	unknown function
UHGV-2101894_24	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-2101894_25	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2101894_25	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2101894_25	UniRef90	UniRef90_B8I137	Primase 2	NA
UHGV-2101894_25	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-2101894_25	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2101894_25	Pfam	PF13481	AAA domain	AAA_25
UHGV-2101894_25	COG	COG3598	RecA-family ATPase	NA
UHGV-2101894_25	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2101894_26	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2101894_26	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2101894_26	UniRef90	UniRef90_A0A3D5UFA3	DEAD/DEAH box helicase	NA
UHGV-2101894_26	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-2101894_26	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2101894_26	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2101894_26	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2101894_26	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2101894_26	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2101894_27	PHROG	phrog_2698	NA	unknown function
UHGV-2101894_27	UniRef90	UniRef90_A0A396Q3D8	NA	NA
UHGV-2101894_27	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-2101894_27	Structural annotation	PF05037	NA	NA
UHGV-2101894_28	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2101894_28	UniRef90	UniRef90_UPI001896F7FA	AAA family ATPase	NA
UHGV-2101894_28	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-2101894_28	Pfam	PF13479	AAA domain	AAA_24
UHGV-2101894_28	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2101894_30	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2101894_30	PHROG	phrog_1499	NA	unknown function
UHGV-2101894_30	UniRef90	UniRef90_UPI00189C91C8	ATP-binding protein	NA
UHGV-2101894_30	eggNOG-mapper	610130.Closa_1366	domain protein	NA
UHGV-2101894_30	Pfam	PF13476	AAA domain	AAA_23
UHGV-2101894_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2101894_30	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2101894_35	UniRef90	UniRef90_UPI0005903B1E	NA	NA
UHGV-2101894_35	eggNOG-mapper	1211817.CCAT010000053_gene2103	Helix-turn-helix	NA
UHGV-2101894_35	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-2101894_36	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2101894_36	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2101894_36	UniRef90	UniRef90_A0A6N9NXR9	Helix-turn-helix domain-containing protein	NA
UHGV-2101894_36	eggNOG-mapper	632518.Calow_0808	Peptidase S24-like	NA
UHGV-2101894_36	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2101894_36	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2101894_36	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2101894_36	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2101894_37	PHROG	phrog_5783	NA	unknown function
UHGV-2101894_37	UniRef90	UniRef90_A0A1G5F6B7	NYN domain-containing protein	NA
UHGV-2101894_37	eggNOG-mapper	665956.HMPREF1032_03590	NYN domain	NA
UHGV-2101894_37	Pfam	PF01936	NYN domain	NYN
UHGV-2101894_37	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2101894_37	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-2101894_38	KOfam	K14059	int; integrase	NA
UHGV-2101894_38	PHROG	phrog_1	integrase	integration and excision
UHGV-2101894_38	UniRef90	UniRef90_UPI0008345DF0	tyrosine-type recombinase/integrase	NA
UHGV-2101894_38	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-2101894_38	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2101894_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2101894_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2101894_38	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2101894_39	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2101894_39	PHROG	phrog_3088	amidase	lysis
UHGV-2101894_39	UniRef90	UniRef90_A0A412AXM4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2101894_39	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2101894_39	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2101894_39	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2101894_39	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2101894_40	PHROG	phrog_443	holin	lysis
UHGV-2101894_40	UniRef90	UniRef90_UPI001C3BFF52	Holin	NA
UHGV-2101894_40	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-2101894_40	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2101894_40	Structural annotation	PF16945	NA	NA
UHGV-2101894_41	PHROG	phrog_1863	NA	unknown function
UHGV-2101894_41	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-2101894_44	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2101894_45	PHROG	phrog_28766	tail fiber protein	tail
UHGV-2101894_45	eggNOG-mapper	189425.PGRAT_19250	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2101894_45	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2101894_46	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-2101894_46	eggNOG-mapper	189425.PGRAT_19210	Prophage endopeptidase tail	NA
UHGV-2101894_46	COG	COG4926	Phage-related protein	NA