UHGV-2102180

Genome information

Genome length 40,957 bps

CDS count 69

Completeness 84.23% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-2102180
vOTU ID	vOTU-041563
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029589\|Ga0245106_100084\|provirus_15664_56620
BioSample	SAMEA3449158
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.71
Jumbo phage	No

Genome content
Genome length	40,957 bps
GC content	52.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	91.82%
Average CDS length	548.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2102180_1	KOfam	K14059	int; integrase	NA
UHGV-2102180_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2102180_1	UniRef90	UniRef90_R6I1Y0	Site-specific recombinase XerD	NA
UHGV-2102180_1	eggNOG-mapper	585506.HMPREF0877_0730	Belongs to the 'phage' integrase family	NA
UHGV-2102180_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2102180_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2102180_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2102180_2	PHROG	phrog_1847	NA	unknown function
UHGV-2102180_2	UniRef90	UniRef90_R6IA31	T5orf172 domain	NA
UHGV-2102180_2	eggNOG-mapper	718252.FP2_06880	NA	NA
UHGV-2102180_2	Pfam	PF13250	NA	DUF4041
UHGV-2102180_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2102180_2	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-2102180_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2102180_3	PHROG	phrog_7241	transcriptional regulator	transcription regulation
UHGV-2102180_3	UniRef90	UniRef90_A0A8B5WSJ4	Transcriptional regulator	NA
UHGV-2102180_3	eggNOG-mapper	608538.HTH_1322	PBP superfamily domain	NA
UHGV-2102180_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2102180_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2102180_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2102180_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2102180_5	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2102180_5	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2102180_5	UniRef90	UniRef90_R6IZD1	Conserved domain protein	NA
UHGV-2102180_5	eggNOG-mapper	397290.C810_01568	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2102180_5	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2102180_5	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2102180_6	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2102180_6	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2102180_6	UniRef90	UniRef90_R6ID61	HicB-like domain-containing protein	NA
UHGV-2102180_6	eggNOG-mapper	397288.C806_02660	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2102180_6	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2102180_6	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2102180_6	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2102180_8	PHROG	phrog_5783	NA	unknown function
UHGV-2102180_8	UniRef90	UniRef90_A0A1C7FL48	Nuclease	NA
UHGV-2102180_8	eggNOG-mapper	445971.ANASTE_00686	NYN domain	NA
UHGV-2102180_8	Pfam	PF01936	NYN domain	NYN
UHGV-2102180_8	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2102180_8	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-2102180_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2102180_9	UniRef90	UniRef90_A0A1Q6RKG1	HTH cro/C1-type domain-containing protein	NA
UHGV-2102180_9	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-2102180_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2102180_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2102180_9	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2102180_12	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2102180_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2102180_12	UniRef90	UniRef90_UPI001957858F	helix-turn-helix domain-containing protein	NA
UHGV-2102180_12	eggNOG-mapper	1123511.KB905866_gene3782	sequence-specific DNA binding	NA
UHGV-2102180_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2102180_12	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2102180_12	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2102180_13	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2102180_13	UniRef90	UniRef90_A0A3A9I6A9	XRE family transcriptional regulator	NA
UHGV-2102180_13	eggNOG-mapper	391009.Tmel_1478	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-2102180_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2102180_13	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2102180_13	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2102180_20	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-2102180_23	UniRef90	UniRef90_R6IFA4	Hydrolase_2 domain-containing protein	NA
UHGV-2102180_23	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-2102180_23	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-2102180_27	PHROG	phrog_36399	NA	unknown function
UHGV-2102180_27	eggNOG-mapper	1007096.BAGW01000031_gene116	NA	NA
UHGV-2102180_28	PHROG	phrog_8470	NA	unknown function
UHGV-2102180_28	UniRef90	UniRef90_UPI0019580896	PcfJ domain-containing protein	NA
UHGV-2102180_28	eggNOG-mapper	1226322.HMPREF1545_00100	PcfJ-like protein	NA
UHGV-2102180_28	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2102180_28	Structural annotation	PF14284	NA	NA
UHGV-2102180_29	PHROG	phrog_15609	NA	unknown function
UHGV-2102180_29	UniRef90	UniRef90_UPI001C12751D	NA	NA
UHGV-2102180_29	eggNOG-mapper	1378168.N510_01841	NA	NA
UHGV-2102180_29	Pfam	PF11300	NA	DUF3102
UHGV-2102180_29	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-2102180_29	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-2102180_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2102180_36	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-2102180_36	Structural annotation	PF01446, NF041486	NA	NA
UHGV-2102180_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2102180_37	eggNOG-mapper	887325.HMPREF0381_0379	NA	NA
UHGV-2102180_38	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-2102180_38	UniRef90	UniRef90_E5VKE3	SLIT-ROBO Rho GTPase-activating protein 3	NA
UHGV-2102180_38	eggNOG-mapper	1235835.C814_01177	NA	NA
UHGV-2102180_39	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-2102180_39	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-2102180_39	UniRef90	UniRef90_A0A810Q3U0	Terminase	NA
UHGV-2102180_39	eggNOG-mapper	97139.C824_03384	Phage terminase large subunit (GpA)	NA
UHGV-2102180_39	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-2102180_39	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-2102180_39	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-2102180_39	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-2102180_40	PHROG	phrog_118	head-tail adaptor	connector
UHGV-2102180_40	UniRef90	UniRef90_A0A4D7AUI1	Peptidylprolyl isomerase	NA
UHGV-2102180_40	eggNOG-mapper	1235835.C814_01179	NA	NA
UHGV-2102180_40	Structural annotation	PF19645	NA	NA
UHGV-2102180_41	PHROG	phrog_21	portal protein	head and packaging
UHGV-2102180_41	UniRef90	UniRef90_A0A810Q9Q9	Phage portal protein	NA
UHGV-2102180_41	eggNOG-mapper	1211817.CCAT010000013_gene3186	Phage portal protein, lambda family	NA
UHGV-2102180_41	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-2102180_41	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-2102180_41	COG	COG5511	Phage capsid protein	NA
UHGV-2102180_41	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-2102180_42	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-2102180_42	UniRef90	UniRef90_A0A810QB92	Caudovirus prohead protease	NA
UHGV-2102180_42	eggNOG-mapper	1235835.C814_01181	Phage prohead protease, HK97 family	NA
UHGV-2102180_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2102180_42	COG	COG3740	Phage head maturation protease	NA
UHGV-2102180_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2102180_43	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-2102180_43	UniRef90	UniRef90_A0A4S2AAE7	Mu-like_gpT domain-containing protein	NA
UHGV-2102180_43	eggNOG-mapper	478749.BRYFOR_07537	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	NA
UHGV-2102180_43	COG	COG3087	Cell division protein FtsN	NA
UHGV-2102180_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2102180_44	PHROG	phrog_122	head decoration	head and packaging
UHGV-2102180_44	UniRef90	UniRef90_A0A4D7ANQ2	NA	NA
UHGV-2102180_44	eggNOG-mapper	1415774.U728_501	NA	NA
UHGV-2102180_44	Pfam	PF09956	NA	DUF2190
UHGV-2102180_44	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-2102180_44	Structural annotation	PF09956, COG5471	NA	NA
UHGV-2102180_45	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-2102180_45	eggNOG-mapper	887325.HMPREF0381_0388	NA	NA
UHGV-2102180_45	Structural annotation	PF12949	NA	NA
UHGV-2102180_46	PHROG	phrog_2551	minor tail protein	tail
UHGV-2102180_46	eggNOG-mapper	887325.HMPREF0381_0389	ATP-binding sugar transporter from pro-phage	NA
UHGV-2102180_46	Structural annotation	PF13856	NA	NA
UHGV-2102180_47	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-2102180_47	UniRef90	UniRef90_UPI001B3C6273	phage tail protein	NA
UHGV-2102180_47	Structural annotation	PF06763	NA	NA
UHGV-2102180_48	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-2102180_48	eggNOG-mapper	1444309.JAQG01000145_gene2689	NA	NA
UHGV-2102180_48	Structural annotation	PF08873	NA	NA
UHGV-2102180_49	PHROG	phrog_4089	NA	unknown function
UHGV-2102180_49	eggNOG-mapper	887325.HMPREF0381_0392	NA	NA
UHGV-2102180_50	KOfam	K06907	NA	NA
UHGV-2102180_50	PHROG	phrog_23	tail sheath	tail
UHGV-2102180_50	UniRef90	UniRef90_A0A845RD08	Phage tail sheath family protein	NA
UHGV-2102180_50	eggNOG-mapper	887325.HMPREF0381_0393	COG3497 Phage tail sheath protein FI	NA
UHGV-2102180_50	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-2102180_50	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-2102180_51	KOfam	K06908	NA	NA
UHGV-2102180_51	PHROG	phrog_55	head closure	connector
UHGV-2102180_51	UniRef90	UniRef90_A0A2V2GD83	Phage tail protein	NA
UHGV-2102180_51	eggNOG-mapper	887325.HMPREF0381_0394	Phage tail tube protein FII	NA
UHGV-2102180_51	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-2102180_51	COG	COG3498	Phage tail tube protein FII	NA
UHGV-2102180_51	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-2102180_52	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-2102180_52	UniRef90	UniRef90_A0A4D7AZF4	Phage tail assembly protein	NA
UHGV-2102180_52	eggNOG-mapper	1235835.C814_01190	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-2102180_52	Structural annotation	PF10109	NA	NA
UHGV-2102180_53	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-2102180_53	UniRef90	UniRef90_A0A0X1U7S0	Phage-related minor tail protein	NA
UHGV-2102180_53	eggNOG-mapper	936573.HMPREF1147_1730	Phage-related minor tail protein	NA
UHGV-2102180_53	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2102180_53	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2102180_53	COG	COG5283	Phage-related tail protein	NA
UHGV-2102180_53	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2102180_54	PHROG	phrog_46	tail protein	tail
UHGV-2102180_54	UniRef90	UniRef90_A0A2N2CRK7	Phage tail protein	NA
UHGV-2102180_54	eggNOG-mapper	478749.BRYFOR_07548	positive regulation of growth rate	NA
UHGV-2102180_54	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-2102180_54	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2102180_54	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-2102180_55	KOfam	K06905	NA	NA
UHGV-2102180_55	PHROG	phrog_52	tail protein	tail
UHGV-2102180_55	UniRef90	UniRef90_G4KPI8	Late control D family protein	NA
UHGV-2102180_55	eggNOG-mapper	693746.OBV_22780	COG3500 Phage protein D	NA
UHGV-2102180_55	COG	COG3500	NA	NA
UHGV-2102180_55	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-2102180_56	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-2102180_56	UniRef90	UniRef90_UPI001D0EA0B7	phage baseplate protein	NA
UHGV-2102180_56	eggNOG-mapper	478749.BRYFOR_07550	Baseplate assembly protein	NA
UHGV-2102180_56	Pfam	PF04717	Type VI secretion system/phage-baseplate injector OB domain	Phage_base_V
UHGV-2102180_56	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-2102180_56	Structural annotation	PF05606, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-2102180_57	KOfam	K06906	NA	NA
UHGV-2102180_57	PHROG	phrog_76	tail protein	tail
UHGV-2102180_57	UniRef90	UniRef90_UPI0004630165	phage tail protein	NA
UHGV-2102180_57	eggNOG-mapper	693746.OBV_22760	Phage P2 GpU	NA
UHGV-2102180_57	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-2102180_57	COG	COG3499	NA	NA
UHGV-2102180_57	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-2102180_58	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-2102180_58	UniRef90	UniRef90_D1Y2B9	Putative lysozyme	NA
UHGV-2102180_58	eggNOG-mapper	352165.HMPREF7215_2807	GPW Gp25 family protein	NA
UHGV-2102180_58	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2102180_58	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-2102180_59	PHROG	phrog_6	baseplate protein	tail
UHGV-2102180_59	UniRef90	UniRef90_A0A810Q3S1	Baseplate_J domain-containing protein	NA
UHGV-2102180_59	eggNOG-mapper	411470.RUMGNA_00246	NA	NA
UHGV-2102180_59	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2102180_59	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-2102180_59	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-2102180_60	PHROG	phrog_48	tail protein	tail
UHGV-2102180_60	UniRef90	UniRef90_A0A2V2GDM7	Phage tail protein I	NA
UHGV-2102180_60	eggNOG-mapper	1408437.JNJN01000030_gene1052	Phage tail protein (Tail_P2_I)	NA
UHGV-2102180_60	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-2102180_60	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2102180_60	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-2102180_61	PHROG	phrog_7037	tail fiber protein	tail
UHGV-2102180_61	eggNOG-mapper	1408437.JNJN01000030_gene1051	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2102180_61	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-2102180_61	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2102180_61	Structural annotation	PF12571	NA	NA
UHGV-2102180_62	PHROG	phrog_37900	NA	unknown function
UHGV-2102180_62	UniRef90	UniRef90_A0A1Q6PTZ1	NA	NA
UHGV-2102180_62	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-2102180_62	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-2102180_62	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-2102180_62	Structural annotation	PF19789, PF00041, COG3979	NA	NA
UHGV-2102180_63	PHROG	phrog_27545	NA	unknown function
UHGV-2102180_63	UniRef90	UniRef90_A0A1Y4WAL9	Chitinase	NA
UHGV-2102180_63	eggNOG-mapper	1203606.HMPREF1526_00344	NA	NA
UHGV-2102180_64	PHROG	phrog_29409	NA	unknown function
UHGV-2102180_64	UniRef90	UniRef90_A0A658JX06	Isoaspartyl peptidase	NA
UHGV-2102180_65	PHROG	phrog_9589	endolysin	lysis
UHGV-2102180_65	UniRef90	UniRef90_A0A6N2TR83	Peptidase C51 domain-containing protein	NA
UHGV-2102180_65	eggNOG-mapper	742740.HMPREF9474_04289	Peptidoglycan-binding domain 1 protein	NA
UHGV-2102180_65	Pfam	PF05257	CHAP domain	CHAP
UHGV-2102180_65	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2102180_65	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-2102180_66	PHROG	phrog_199	holin	lysis
UHGV-2102180_66	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-2102180_66	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-2102180_66	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2102180_66	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2102180_66	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2102180_66	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA