UHGV-2103210

Genome information

vOTU vOTU-061914

Genome length 56,223 bps

CDS count 97

Completeness 97.52% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-2103210
vOTU ID	vOTU-061914
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029549\|Ga0244894_100012\|provirus_244762_305901
BioSample	SAMEA3708738
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.52% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.31
Jumbo phage	No

Genome content
Genome length	56,223 bps
GC content	40.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	97
CDS density	86.20%
Average CDS length	503.23 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2103210_1	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-2103210_1	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-2103210_1	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-2103210_2	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2103210_2	UniRef90	UniRef90_A0A3R6CGB9	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2103210_2	eggNOG-mapper	397291.C804_00950	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2103210_2	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2103210_2	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2103210_2	Structural annotation	PF01507, MF_00063, NF010367, COG0175	NA	NA
UHGV-2103210_7	PHROG	phrog_20593	NA	unknown function
UHGV-2103210_8	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-2103210_9	PHROG	phrog_8684	NA	unknown function
UHGV-2103210_9	UniRef90	UniRef90_A0A173RDP8	YopX protein	NA
UHGV-2103210_9	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-2103210_9	Pfam	PF09643	YopX protein	YopX
UHGV-2103210_9	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2103210_9	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2103210_10	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-2103210_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2103210_11	PHROG	phrog_22292	NA	unknown function
UHGV-2103210_14	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2103210_14	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2103210_14	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-2103210_14	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-2103210_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2103210_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2103210_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-2103210_14	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2103210_15	PHROG	phrog_11769	NA	unknown function
UHGV-2103210_15	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-2103210_15	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-2103210_15	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2103210_15	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2103210_15	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-2103210_16	PHROG	phrog_19106	NA	unknown function
UHGV-2103210_16	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-2103210_16	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-2103210_16	Structural annotation	TIGR01453	NA	NA
UHGV-2103210_19	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2103210_19	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2103210_19	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-2103210_19	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-2103210_19	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2103210_19	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-2103210_20	eggNOG-mapper	1121098.HMPREF1534_01074	Metallo-beta-lactamase superfamily	NA
UHGV-2103210_20	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2103210_21	PHROG	phrog_25456	NA	unknown function
UHGV-2103210_22	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2103210_22	UniRef90	UniRef90_UPI001904C527	recombinase RecT	NA
UHGV-2103210_22	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-2103210_22	Structural annotation	NF007351, COG3723	NA	NA
UHGV-2103210_24	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-2103210_27	PHROG	phrog_19610	NA	unknown function
UHGV-2103210_28	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2103210_28	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2103210_28	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-2103210_28	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-2103210_28	PADLOC	AAA_15	NA	NA
UHGV-2103210_28	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-2103210_28	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2103210_28	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2103210_29	PHROG	phrog_26861	NA	unknown function
UHGV-2103210_29	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-2103210_29	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-2103210_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2103210_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2103210_29	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-2103210_32	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-2103210_32	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-2103210_32	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-2103210_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2103210_32	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2103210_32	COG	COG3617	Prophage antirepressor	NA
UHGV-2103210_32	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-2103210_37	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-2103210_37	UniRef90	UniRef90_A0A173RD24	ORF6N domain	NA
UHGV-2103210_37	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-2103210_37	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2103210_37	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2103210_40	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2103210_40	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2103210_40	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-2103210_40	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-2103210_40	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2103210_40	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2103210_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2103210_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2103210_41	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2103210_41	Structural annotation	NF040910	NA	NA
UHGV-2103210_42	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-2103210_44	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-2103210_45	PHROG	phrog_17196	kinase	other
UHGV-2103210_45	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-2103210_45	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-2103210_46	PHROG	phrog_18190	NA	unknown function
UHGV-2103210_46	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-2103210_46	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-2103210_46	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2103210_46	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2103210_47	PHROG	phrog_1194	NA	unknown function
UHGV-2103210_47	Pfam	PF20458	NA	DUF6711
UHGV-2103210_47	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2103210_48	PHROG	phrog_806	NA	unknown function
UHGV-2103210_48	UniRef90	UniRef90_N1ZUR1	NA	NA
UHGV-2103210_48	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-2103210_48	Pfam	PF11611	NA	DUF4352
UHGV-2103210_48	Structural annotation	PF11611, PF13828, MF_00791, NF003967, COG2967	NA	NA
UHGV-2103210_49	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-2103210_49	UniRef90	UniRef90_A0A0K8J2R3	BIG2 domain-containing protein	NA
UHGV-2103210_49	eggNOG-mapper	1280681.AUJZ01000002_gene1435	Bacterial Ig-like domain 2	NA
UHGV-2103210_49	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2103210_49	Structural annotation	PF02368, NF041740	NA	NA
UHGV-2103210_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2103210_50	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-2103210_50	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-2103210_50	COG	COG1511	NA	NA
UHGV-2103210_51	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2103210_51	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-2103210_51	eggNOG-mapper	745718.JADT01000019_gene1515	Intron encoded nuclease repeat motif	NA
UHGV-2103210_51	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-2103210_51	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-2103210_51	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-2103210_51	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-2103210_52	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2103210_52	UniRef90	UniRef90_A0A173UI54	Phage-related protein	NA
UHGV-2103210_52	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-2103210_52	COG	COG1511	NA	NA
UHGV-2103210_53	PHROG	phrog_14030	NA	unknown function
UHGV-2103210_53	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-2103210_53	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-2103210_53	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2103210_56	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-2103210_56	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-2103210_57	Structural annotation	PF05657	NA	NA
UHGV-2103210_58	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-2103210_58	AcrCatalog	cluster_24841	NA	NA
UHGV-2103210_59	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2103210_60	PHROG	phrog_443	holin	lysis
UHGV-2103210_60	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-2103210_60	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-2103210_60	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2103210_60	Structural annotation	PF16945	NA	NA
UHGV-2103210_61	PHROG	phrog_4105	NA	unknown function
UHGV-2103210_61	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-2103210_62	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-2103210_63	PHROG	phrog_29	major head protein	head and packaging
UHGV-2103210_63	UniRef90	UniRef90_A0A2S6HJ16	Major capsid protein E	NA
UHGV-2103210_63	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-2103210_63	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2103210_63	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2103210_63	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-2103210_64	PHROG	phrog_909	major head protein	head and packaging
UHGV-2103210_64	UniRef90	UniRef90_A0A0R1VNK8	NA	NA
UHGV-2103210_64	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-2103210_64	Structural annotation	PF02924	NA	NA
UHGV-2103210_65	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-2103210_66	PHROG	phrog_64	portal protein	head and packaging
UHGV-2103210_66	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-2103210_66	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2103210_66	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2103210_66	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2103210_67	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2103210_67	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-2103210_67	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-2103210_67	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2103210_67	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2103210_68	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2103210_68	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-2103210_68	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-2103210_68	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-2103210_68	COG	COG5410	NA	NA
UHGV-2103210_68	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2103210_69	PHROG	phrog_2316	NA	unknown function
UHGV-2103210_69	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-2103210_69	eggNOG-mapper	1157490.EL26_01915	NA	NA
UHGV-2103210_69	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-2103210_74	UniRef90	UniRef90_UPI001D011ACB	zinc ribbon domain-containing protein	NA
UHGV-2103210_74	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-2103210_76	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-2103210_78	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-2103210_78	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-2103210_78	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-2103210_78	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-2103210_78	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-2103210_78	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-2103210_79	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-2103210_82	Structural annotation	PF12993	NA	NA
UHGV-2103210_83	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-2103210_83	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-2103210_83	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2103210_84	UniRef90	UniRef90_UPI001D008199	helix-turn-helix domain-containing protein	NA
UHGV-2103210_84	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2103210_84	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2103210_85	UniRef90	UniRef90_A0A3R6A796	Molecular chaperone DnaJ	NA
UHGV-2103210_85	eggNOG-mapper	500632.CLONEX_04013	DnaJ molecular chaperone homology domain	NA
UHGV-2103210_85	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-2103210_85	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-2103210_85	Structural annotation	PF18847	NA	NA
UHGV-2103210_87	UniRef90	UniRef90_A0A7X5I8Q7	Fork-head domain-containing protein	NA
UHGV-2103210_91	PHROG	phrog_1233	NA	unknown function
UHGV-2103210_91	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-2103210_91	Structural annotation	PF13058	NA	NA
UHGV-2103210_92	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-2103210_93	PHROG	phrog_20016	NA	unknown function
UHGV-2103210_93	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2103210_93	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2103210_93	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2103210_94	PHROG	phrog_16490	NA	unknown function
UHGV-2103210_94	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-2103210_95	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-2103210_96	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA