UHGV-2103501

Genome information

vOTU vOTU-019604

Genome length 31,646 bps

CDS count 70

Completeness 53.13% (medium-quality)

geNomad score 0.9701

Prediction confidence Confident

Genome information
Genome ID	UHGV-2103501
vOTU ID	vOTU-019604
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029574\|Ga0243862_100764
BioSample	SAMN05971573
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9701
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.53
Jumbo phage	No

Genome content
Genome length	31,646 bps
GC content	37.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	87.05%
Average CDS length	396.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2103501_1	eggNOG-mapper	435590.BVU_2820	Phage minor structural protein	NA
UHGV-2103501_1	COG	COG4926	Phage-related protein	NA
UHGV-2103501_2	eggNOG-mapper	357276.EL88_08340	NA	NA
UHGV-2103501_3	PHROG	phrog_15610	protease	other
UHGV-2103501_3	eggNOG-mapper	667015.Bacsa_1191	NA	NA
UHGV-2103501_4	UniRef90	UniRef90_UPI001F21AFC7	pyocin knob domain-containing protein	NA
UHGV-2103501_4	eggNOG-mapper	357276.EL88_08330	NA	NA
UHGV-2103501_12	eggNOG-mapper	357276.EL88_08330	NA	NA
UHGV-2103501_16	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2103501_16	PHROG	phrog_1	integrase	integration and excision
UHGV-2103501_16	UniRef90	UniRef90_A0A415SS74	Site-specific integrase	NA
UHGV-2103501_16	eggNOG-mapper	1122971.BAME01000063_gene4648	Arm DNA-binding domain	NA
UHGV-2103501_16	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2103501_16	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2103501_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2103501_16	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2103501_16	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2103501_19	UniRef90	UniRef90_A0A6M4K7H8	Helix-turn-helix domain-containing protein	NA
UHGV-2103501_19	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-2103501_19	Structural annotation	PF02796	NA	NA
UHGV-2103501_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2103501_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2103501_20	UniRef90	UniRef90_A0A4S2FPD3	PBSX family phage terminase large subunit	NA
UHGV-2103501_20	eggNOG-mapper	1122971.BAME01000163_gene6625	Phage terminase large subunit	NA
UHGV-2103501_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2103501_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2103501_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-2103501_20	Structural annotation	PF04466, PF17289, MF_04145, MF_00034, TIGR01547, TIGR01630, COG1783, COG5362	NA	NA
UHGV-2103501_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2103501_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2103501_21	UniRef90	UniRef90_A0A7J5MNL6	Terminase small subunit	NA
UHGV-2103501_21	eggNOG-mapper	1122971.BAME01000163_gene6624	Terminase small subunit	NA
UHGV-2103501_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2103501_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2103501_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2103501_22	Structural annotation	PF08928	NA	NA
UHGV-2103501_23	eggNOG-mapper	357276.EL88_11425	NA	NA
UHGV-2103501_24	PHROG	phrog_9236	pyrophosphatase	other
UHGV-2103501_24	eggNOG-mapper	411476.BACOVA_03907	NA	NA
UHGV-2103501_25	PHROG	phrog_9236	pyrophosphatase	other
UHGV-2103501_25	eggNOG-mapper	657309.BXY_08510	NA	NA
UHGV-2103501_26	PHROG	phrog_874	NA	unknown function
UHGV-2103501_26	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-2103501_26	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2103501_27	PHROG	phrog_12005	NA	unknown function
UHGV-2103501_28	Structural annotation	PF17574, TIGR04550	NA	NA
UHGV-2103501_29	PHROG	phrog_28300	NA	unknown function
UHGV-2103501_29	eggNOG-mapper	483215.BACFIN_06266	NA	NA
UHGV-2103501_32	eggNOG-mapper	1121100.JCM6294_541	NA	NA
UHGV-2103501_35	UniRef90	UniRef90_A0A7J5ML74	NA	NA
UHGV-2103501_35	eggNOG-mapper	1347393.HG726022_gene3718	NA	NA
UHGV-2103501_35	Pfam	PF04448	NA	DUF551
UHGV-2103501_35	Structural annotation	PF04448, NF041588	NA	NA
UHGV-2103501_37	eggNOG-mapper	547042.BACCOPRO_02157	MutS domain I	NA
UHGV-2103501_37	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-2103501_38	PHROG	phrog_954	DNA methyltransferase	other
UHGV-2103501_38	UniRef90	UniRef90_A0A7J5ML27	Methyltransferase	NA
UHGV-2103501_38	eggNOG-mapper	1121098.HMPREF1534_01090	Methyltransferase domain	NA
UHGV-2103501_38	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-2103501_38	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-2103501_38	Structural annotation	PF05148, MF_00735, NF033398, COG1041	NA	NA
UHGV-2103501_39	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2103501_39	UniRef90	UniRef90_A0A6I0IHE8	Radical SAM protein	NA
UHGV-2103501_39	eggNOG-mapper	742727.HMPREF9447_01719	radical SAM domain protein	NA
UHGV-2103501_39	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2103501_39	Structural annotation	MF_01865, TIGR00089, COG0621	NA	NA
UHGV-2103501_40	Structural annotation	PF17457	NA	NA
UHGV-2103501_42	UniRef90	UniRef90_UPI001E296F76	host-nuclease inhibitor Gam family protein	NA
UHGV-2103501_42	eggNOG-mapper	357276.EL88_11460	NA	NA
UHGV-2103501_45	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2103501_45	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2103501_45	UniRef90	UniRef90_A0A7J5ML86	DNA helicase	NA
UHGV-2103501_45	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-2103501_45	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2103501_45	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2103501_45	COG	COG0305	Replicative DNA helicase	NA
UHGV-2103501_45	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2103501_46	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2103501_46	UniRef90	UniRef90_UPI001F224AE4	NA	NA
UHGV-2103501_46	eggNOG-mapper	435591.BDI_0859	DnaD domain protein	NA
UHGV-2103501_46	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2103501_50	PHROG	phrog_824	NA	unknown function
UHGV-2103501_50	UniRef90	UniRef90_I9QI19	VRR-NUC domain-containing protein	NA
UHGV-2103501_50	eggNOG-mapper	411901.BACCAC_01208	NA	NA
UHGV-2103501_51	AcrCatalog	cluster_25385	NA	NA
UHGV-2103501_54	PHROG	phrog_5848	NA	unknown function
UHGV-2103501_54	eggNOG-mapper	1026955.F5B457_9CAUD	NA	NA
UHGV-2103501_55	PHROG	phrog_19572	NA	unknown function
UHGV-2103501_55	UniRef90	UniRef90_A0A7K0JAI7	NA	NA
UHGV-2103501_55	eggNOG-mapper	1237149.C900_05305	NA	NA
UHGV-2103501_55	Pfam	PF14902	NA	DUF4494
UHGV-2103501_55	Structural annotation	PF14902, COG2157	NA	NA
UHGV-2103501_57	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2103501_57	eggNOG-mapper	762968.HMPREF9441_02240	NA	NA
UHGV-2103501_57	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2103501_58	UniRef90	UniRef90_F3QQV6	Conserved domain protein	NA
UHGV-2103501_58	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-2103501_59	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2103501_59	UniRef90	UniRef90_A6L492	PDDEXK_1 domain-containing protein	NA
UHGV-2103501_59	eggNOG-mapper	762982.HMPREF9442_00550	NA	NA
UHGV-2103501_59	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2103501_60	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2103501_60	UniRef90	UniRef90_A0A7J5MLF0	ERF family protein	NA
UHGV-2103501_60	eggNOG-mapper	485918.Cpin_3859	single-stranded DNA binding	NA
UHGV-2103501_60	Pfam	PF04404	ERF superfamily	ERF
UHGV-2103501_60	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2103501_60	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-2103501_64	eggNOG-mapper	470145.BACCOP_01611	NA	NA
UHGV-2103501_66	UniRef90	UniRef90_A0A4S2FP61	DNA-binding protein	NA
UHGV-2103501_66	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2103501_66	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2103501_66	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2103501_66	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2103501_67	UniRef90	UniRef90_A0A7K0JB02	DeoR family transcriptional regulator	NA
UHGV-2103501_67	Pfam	PF08220	DeoR-like helix-turn-helix domain	HTH_DeoR
UHGV-2103501_67	Structural annotation	PF08587	NA	NA
UHGV-2103501_68	UniRef90	UniRef90_A0A7J5ML55	Helix-turn-helix domain-containing protein	NA
UHGV-2103501_68	eggNOG-mapper	1356852.N008_17715	transcriptional regulator	NA
UHGV-2103501_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2103501_68	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA