UHGV-2103799

Genome information

Genome length 30,035 bps

CDS count 41

Completeness 100.00% (complete)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-2103799
vOTU ID	vOTU-004122
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029521\|Ga0244833_100970
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.32
Jumbo phage	No

Genome content
Genome length	30,035 bps
GC content	51.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.41%
Average CDS length	671.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2103799_2	eggNOG-mapper	240302.BN982_04236	NA	NA
UHGV-2103799_2	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2103799_3	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2103799_3	UniRef90	UniRef90_UPI0011C364A6	helix-turn-helix domain-containing protein	NA
UHGV-2103799_3	eggNOG-mapper	411483.FAEPRAA2165_01484	NA	NA
UHGV-2103799_3	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2103799_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2103799_3	Structural annotation	PF02002, MF_01177, TIGR04176, COG3355	NA	NA
UHGV-2103799_4	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2103799_4	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2103799_4	UniRef90	UniRef90_A0A345MKF4	Helicase loader	NA
UHGV-2103799_4	eggNOG-mapper	1519439.JPJG01000084_gene449	IstB-like ATP binding protein	NA
UHGV-2103799_4	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2103799_4	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2103799_4	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-2103799_7	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-2103799_7	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2103799_7	UniRef90	UniRef90_A0A345MKF7	Holliday junction resolvase	NA
UHGV-2103799_7	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-2103799_8	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2103799_8	UniRef90	UniRef90_A0A345MKF8	Nucleoside triphosphate pyrophosphohydrolase	NA
UHGV-2103799_8	Structural annotation	PF02185	NA	NA
UHGV-2103799_9	PHROG	phrog_2412	NA	unknown function
UHGV-2103799_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2103799_10	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2103799_10	UniRef90	UniRef90_A0A345MKB6	Terminase large subunit	NA
UHGV-2103799_10	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-2103799_10	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2103799_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2103799_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-2103799_10	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2103799_11	PHROG	phrog_533	portal protein	head and packaging
UHGV-2103799_11	UniRef90	UniRef90_A0A345MKB8	Portal protein	NA
UHGV-2103799_11	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-2103799_11	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2103799_12	PHROG	phrog_21498	NA	unknown function
UHGV-2103799_12	UniRef90	UniRef90_A0A4Q5AKJ0	Chromosome partitioning protein ParB	NA
UHGV-2103799_12	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-2103799_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2103799_12	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-2103799_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2103799_13	UniRef90	UniRef90_A0A345MKC2	Minor capsid protein	NA
UHGV-2103799_13	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-2103799_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2103799_13	COG	COG2369	NA	NA
UHGV-2103799_13	Structural annotation	PF06152	NA	NA
UHGV-2103799_14	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-2103799_14	PHROG	phrog_7713	NA	unknown function
UHGV-2103799_14	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-2103799_14	Structural annotation	PF13599, NF000139	NA	NA
UHGV-2103799_16	UniRef90	UniRef90_A0A345MKC5	Restriction alleviation protein	NA
UHGV-2103799_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2103799_16	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2103799_16	Structural annotation	PF18300, TIGR03318, COG1329	NA	NA
UHGV-2103799_17	PHROG	phrog_27136	NA	unknown function
UHGV-2103799_17	UniRef90	UniRef90_A0A842JG22	SHOCT domain-containing protein	NA
UHGV-2103799_17	eggNOG-mapper	552396.HMPREF0863_02448	Short C-terminal domain	NA
UHGV-2103799_19	PHROG	phrog_16126	NA	unknown function
UHGV-2103799_19	eggNOG-mapper	665950.HMPREF1025_01378	NA	NA
UHGV-2103799_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2103799_20	UniRef90	UniRef90_A0A345MKC9	Minor structural protein	NA
UHGV-2103799_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2103799_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-2103799_21	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-2103799_21	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-2103799_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2103799_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2103799_23	UniRef90	UniRef90_A0A345MKD1	Putative head-tail connector protein	NA
UHGV-2103799_24	PHROG	phrog_3366	NA	unknown function
UHGV-2103799_24	Structural annotation	PF20536	NA	NA
UHGV-2103799_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2103799_25	UniRef90	UniRef90_A0A345MKD3	Minor capsid protein	NA
UHGV-2103799_25	eggNOG-mapper	764299.STRIC_2533	Minor capsid protein	NA
UHGV-2103799_25	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2103799_25	Structural annotation	PF11114	NA	NA
UHGV-2103799_26	PHROG	phrog_3266	tail completion	connector
UHGV-2103799_26	Structural annotation	PF12691	NA	NA
UHGV-2103799_27	PHROG	phrog_3099	NA	unknown function
UHGV-2103799_27	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2103799_29	PHROG	phrog_706	NA	unknown function
UHGV-2103799_29	UniRef90	UniRef90_UPI000694EF6E	Gp15 family bacteriophage protein	NA
UHGV-2103799_29	eggNOG-mapper	1539298.JO41_08145	Bacteriophage Gp15 protein	NA
UHGV-2103799_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2103799_29	Structural annotation	PF06854	NA	NA
UHGV-2103799_30	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2103799_30	UniRef90	UniRef90_A0A345MKD8	Minor tail protein	NA
UHGV-2103799_30	eggNOG-mapper	1238186.AOCN01000004_gene55	nuclear chromosome segregation	NA
UHGV-2103799_30	COG	COG1511	NA	NA
UHGV-2103799_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2103799_31	UniRef90	UniRef90_A0A174NC72	BppU_N domain-containing protein	NA
UHGV-2103799_31	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-2103799_33	PHROG	phrog_3558	tail protein	tail
UHGV-2103799_33	UniRef90	UniRef90_A0A345MKE1	Putative tail protein	NA
UHGV-2103799_33	eggNOG-mapper	1391188.A0A068EMP3_9CAUD	NA	NA
UHGV-2103799_33	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2103799_34	PHROG	phrog_937	hemolysin	other
UHGV-2103799_34	eggNOG-mapper	428127.EUBDOL_01568	NA	NA
UHGV-2103799_36	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2103799_36	PHROG	phrog_14048	endolysin	lysis
UHGV-2103799_36	UniRef90	UniRef90_A0A345MKE4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2103799_36	eggNOG-mapper	585198.HMPREF0574_1006	CW_7 repeat	NA
UHGV-2103799_36	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2103799_36	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-2103799_36	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2103799_36	Structural annotation	PF01510, PF19127, MF_04111, TIGR04035, NF008758, COG5263, COG3023	NA	NA
UHGV-2103799_37	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2103799_37	UniRef90	UniRef90_A0A7X5IFH1	Phage recombination protein Bet	NA
UHGV-2103799_37	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-2103799_37	Pfam	PF03837	RecT family	RecT
UHGV-2103799_37	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2103799_37	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2103799_37	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2103799_38	eggNOG-mapper	742722.HMPREF9463_00201	NA	NA
UHGV-2103799_38	Structural annotation	PF07083	NA	NA
UHGV-2103799_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2103799_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2103799_39	UniRef90	UniRef90_A0A1Y4FTC9	Single-stranded DNA-binding protein	NA
UHGV-2103799_39	eggNOG-mapper	502558.EGYY_00970	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2103799_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2103799_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2103799_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2103799_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2103799_39	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA