UHGV-2104280

Genome information

Genome length 39,352 bps

CDS count 44

Completeness 99.90% (high-quality)

geNomad score 0.9661

Prediction confidence Confident

Genome information
Genome ID	UHGV-2104280
vOTU ID	vOTU-007712
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029575\|Ga0244903_100012\|provirus_192445_231796
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9661
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.59
Jumbo phage	No

Genome content
Genome length	39,352 bps
GC content	36.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	95.68%
Average CDS length	857.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2104280_1	UniRef90	UniRef90_A0A3D4CAN7	SH3b domain-containing protein	NA
UHGV-2104280_1	eggNOG-mapper	717606.PaecuDRAFT_1762	Papain-like cysteine protease AvrRpt2	NA
UHGV-2104280_1	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-2104280_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2104280_1	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-2104280_1	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA
UHGV-2104280_2	PHROG	phrog_18218	NA	unknown function
UHGV-2104280_2	eggNOG-mapper	1378168.N510_02472	NA	NA
UHGV-2104280_3	PHROG	phrog_4105	NA	unknown function
UHGV-2104280_3	eggNOG-mapper	397288.C806_00115	NA	NA
UHGV-2104280_4	PHROG	phrog_10972	tail fiber protein	tail
UHGV-2104280_4	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-2104280_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2104280_4	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2104280_5	PHROG	phrog_22978	NA	unknown function
UHGV-2104280_5	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-2104280_5	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-2104280_5	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-2104280_7	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-2104280_9	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-2104280_9	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-2104280_9	Structural annotation	PF11134, MF_01348, NF038015, NF038128, COG3292	NA	NA
UHGV-2104280_10	PHROG	phrog_12105	NA	unknown function
UHGV-2104280_10	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-2104280_12	PHROG	phrog_1357	major head protein	head and packaging
UHGV-2104280_12	UniRef90	UniRef90_A0A7G9GB60	N4-gp56 family major capsid protein	NA
UHGV-2104280_12	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-2104280_12	Pfam	PF13252	NA	DUF4043
UHGV-2104280_12	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2104280_12	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2104280_13	PHROG	phrog_13908	NA	unknown function
UHGV-2104280_13	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-2104280_14	KOfam	K07584	NA	NA
UHGV-2104280_14	PHROG	phrog_4478	peptidase	other
UHGV-2104280_14	UniRef90	UniRef90_R6QMR4	Predicted ribosomal protein	NA
UHGV-2104280_14	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2104280_14	COG	COG2868	NA	NA
UHGV-2104280_14	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2104280_15	PHROG	phrog_156	portal protein	head and packaging
UHGV-2104280_15	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-2104280_15	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-2104280_15	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2104280_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2104280_16	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2104280_16	UniRef90	UniRef90_R6Q637	PBSX family phage terminase large subunit	NA
UHGV-2104280_16	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-2104280_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2104280_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-2104280_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2104280_17	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-2104280_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2104280_20	UniRef90	UniRef90_R6RCC6	Gp31	NA
UHGV-2104280_20	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-2104280_20	Structural annotation	PF21578, NF033538	NA	NA
UHGV-2104280_23	PHROG	phrog_34937	NA	unknown function
UHGV-2104280_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2104280_24	UniRef90	UniRef90_R6RCC6	Gp31	NA
UHGV-2104280_24	eggNOG-mapper	1414720.CBYM010000002_gene589	NA	NA
UHGV-2104280_25	UniRef90	UniRef90_UPI0019572D92	NA	NA
UHGV-2104280_25	eggNOG-mapper	1321782.HMPREF1986_00358	NA	NA
UHGV-2104280_25	Structural annotation	PF14359, MF_03036, NF004049, COG3613	NA	NA
UHGV-2104280_32	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2104280_32	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-2104280_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2104280_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2104280_34	UniRef90	UniRef90_R6QMS7	Single-stranded DNA-binding protein	NA
UHGV-2104280_34	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2104280_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2104280_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2104280_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2104280_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2104280_34	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2104280_36	PHROG	phrog_9804	NA	unknown function
UHGV-2104280_36	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-2104280_36	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2104280_36	Structural annotation	PF11417	NA	NA
UHGV-2104280_37	PHROG	phrog_1163	NA	unknown function
UHGV-2104280_37	UniRef90	UniRef90_R6RCD3	Putative phage replication protein	NA
UHGV-2104280_37	eggNOG-mapper	1295642.H839_08149	Replication initiation and membrane attachment	NA
UHGV-2104280_37	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-2104280_37	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-2104280_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2104280_37	Structural annotation	PF09524, TIGR02220	NA	NA
UHGV-2104280_38	PHROG	phrog_26314	NA	unknown function
UHGV-2104280_39	UniRef90	UniRef90_UPI001EFBBD68	NA	NA
UHGV-2104280_39	eggNOG-mapper	1239381.K4JXN9_9CAUD	NA	NA
UHGV-2104280_39	Pfam	PF05339	NA	DUF739
UHGV-2104280_39	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-2104280_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2104280_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2104280_40	UniRef90	UniRef90_A0A374ND72	Transcriptional regulator	NA
UHGV-2104280_40	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-2104280_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2104280_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2104280_40	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-2104280_41	PHROG	phrog_1914	NA	unknown function
UHGV-2104280_41	UniRef90	UniRef90_UPI001D082E60	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2104280_41	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2104280_41	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2104280_41	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2104280_41	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2104280_43	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2104280_43	PHROG	phrog_95	integrase	integration and excision
UHGV-2104280_43	UniRef90	UniRef90_A0A1Q6LBY2	Recombinase domain-containing protein	NA
UHGV-2104280_43	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-2104280_43	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2104280_43	Pfam	PF07508	Recombinase	Recombinase
UHGV-2104280_43	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2104280_43	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2104280_43	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2104280_44	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-2104280_44	PHROG	phrog_7573	NA	unknown function
UHGV-2104280_44	UniRef90	UniRef90_R7BF28	Manganese containing catalase	NA
UHGV-2104280_44	eggNOG-mapper	1105031.HMPREF1141_2503	PFAM Manganese containing catalase	NA
UHGV-2104280_44	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-2104280_44	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-2104280_44	Structural annotation	PF05067, TIGR04535, COG3546	NA	NA