UHGV-2105219

Genome information

Genome length 29,689 bps

CDS count 47

Completeness 73.18% (medium-quality)

geNomad score 0.9710

Prediction confidence Confident

Genome information
Genome ID	UHGV-2105219
vOTU ID	vOTU-015363
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029563\|Ga0245114_100018\|provirus_15662_45350
BioSample	SAMEA3449166
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9710
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.39
Jumbo phage	No

Genome content
Genome length	29,689 bps
GC content	57.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.16%
Average CDS length	584.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2105219_2	eggNOG-mapper	483216.BACEGG_01163	NA	NA
UHGV-2105219_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2105219_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2105219_3	UniRef90	UniRef90_A0A3A9EXV7	XRE family transcriptional regulator	NA
UHGV-2105219_3	eggNOG-mapper	1151292.QEW_0314	DNA-binding helix-turn-helix protein	NA
UHGV-2105219_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2105219_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2105219_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2105219_7	Structural annotation	PF10656	NA	NA
UHGV-2105219_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2105219_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2105219_10	UniRef90	UniRef90_G9WTJ7	Single-stranded DNA-binding protein	NA
UHGV-2105219_10	eggNOG-mapper	500632.CLONEX_02624	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2105219_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2105219_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2105219_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2105219_10	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2105219_11	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2105219_11	UniRef90	UniRef90_A0A416AFS0	NA	NA
UHGV-2105219_11	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-2105219_11	Pfam	PF06356	NA	DUF1064
UHGV-2105219_11	Structural annotation	PF06356	NA	NA
UHGV-2105219_13	PHROG	phrog_4973	NA	unknown function
UHGV-2105219_13	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-2105219_13	eggNOG-mapper	1038869.AXAN01000006_gene942	Helix-turn-helix domain	NA
UHGV-2105219_13	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-2105219_13	Structural annotation	PF14090, TIGR00373, COG4344	NA	NA
UHGV-2105219_14	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2105219_14	UniRef90	UniRef90_A0A3D5IDX7	DnaB_2 domain-containing protein	NA
UHGV-2105219_14	eggNOG-mapper	1139219.I569_00217	Replication initiation and membrane attachment	NA
UHGV-2105219_14	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2105219_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2105219_14	Structural annotation	PF03444, MF_01911, TIGR01610, COG5529	NA	NA
UHGV-2105219_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2105219_17	UniRef90	UniRef90_UPI000496DFC6	NA	NA
UHGV-2105219_17	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-2105219_17	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2105219_17	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2105219_19	UniRef90	UniRef90_A0A3D2GX58	HTH cro/C1-type domain-containing protein	NA
UHGV-2105219_19	eggNOG-mapper	665950.HMPREF1025_01508	Helix-turn-helix XRE-family like proteins	NA
UHGV-2105219_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2105219_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2105219_19	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2105219_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2105219_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2105219_20	UniRef90	UniRef90_A0A3D5IBW1	Terminase small subunit	NA
UHGV-2105219_20	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-2105219_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2105219_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2105219_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2105219_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2105219_21	UniRef90	UniRef90_A0A1Q6Q1R5	Terminase	NA
UHGV-2105219_21	eggNOG-mapper	887325.HMPREF0381_0087	Terminase-like family	NA
UHGV-2105219_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2105219_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2105219_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2105219_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-2105219_21	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-2105219_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2105219_22	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-2105219_22	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-2105219_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-2105219_23	UniRef90	UniRef90_A0A3D2GX93	Portal protein	NA
UHGV-2105219_23	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-2105219_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2105219_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2105219_24	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2105219_24	UniRef90	UniRef90_A0A3D5ID44	Phage_Mu_F domain-containing protein	NA
UHGV-2105219_24	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-2105219_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2105219_24	COG	COG2369	NA	NA
UHGV-2105219_25	UniRef90	UniRef90_A0A372X312	Transposase	NA
UHGV-2105219_28	PHROG	phrog_1129	holin	lysis
UHGV-2105219_28	UniRef90	UniRef90_A0A3D5IBP7	Enolase	NA
UHGV-2105219_28	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2105219_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2105219_28	Structural annotation	PF06946	NA	NA
UHGV-2105219_29	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-2105219_29	PHROG	phrog_2649	endolysin	lysis
UHGV-2105219_29	UniRef90	UniRef90_A0A3D5IDY5	NlpC/P60 domain-containing protein	NA
UHGV-2105219_29	eggNOG-mapper	44060.JODL01000010_gene1575	Negative regulator of	NA
UHGV-2105219_29	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2105219_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2105219_29	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2105219_29	Structural annotation	PF00877, PF01471, NF033742, NF038080, COG0791	NA	NA
UHGV-2105219_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2105219_30	UniRef90	UniRef90_A0A6N3C3T0	Phage minor structural protein GP20	NA
UHGV-2105219_30	eggNOG-mapper	929506.CbC4_1215	Phage minor structural protein GP20	NA
UHGV-2105219_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2105219_30	Structural annotation	PF06810	NA	NA
UHGV-2105219_31	PHROG	phrog_544	major head protein	head and packaging
UHGV-2105219_31	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-2105219_31	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-2105219_31	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2105219_31	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2105219_32	PHROG	phrog_1236	head protein	head and packaging
UHGV-2105219_32	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-2105219_32	Structural annotation	PF05135	NA	NA
UHGV-2105219_33	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-2105219_33	UniRef90	UniRef90_A0A1C6E9J3	Bacteriophage head-tail adaptor	NA
UHGV-2105219_33	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-2105219_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2105219_34	UniRef90	UniRef90_UPI001C107D65	HK97 gp10 family phage protein	NA
UHGV-2105219_34	eggNOG-mapper	1235800.C819_02230	NA	NA
UHGV-2105219_34	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2105219_35	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-2105219_35	Structural annotation	PF12691	NA	NA
UHGV-2105219_36	PHROG	phrog_885	major tail protein	tail
UHGV-2105219_36	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-2105219_36	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2105219_37	PHROG	phrog_1021	NA	unknown function
UHGV-2105219_37	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-2105219_39	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2105219_39	UniRef90	UniRef90_UPI0018CFD62B	phage tail protein	NA
UHGV-2105219_39	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-2105219_39	COG	COG5412	Phage-related protein	NA
UHGV-2105219_39	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-2105219_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2105219_40	UniRef90	UniRef90_A0A351TQW0	MtfA protein	NA
UHGV-2105219_40	eggNOG-mapper	1304866.K413DRAFT_1235	PFAM Phage tail protein	NA
UHGV-2105219_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-2105219_40	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-2105219_41	PHROG	phrog_3558	tail protein	tail
UHGV-2105219_41	UniRef90	UniRef90_A0A7U9XC50	Chromosome partition protein Smc	NA
UHGV-2105219_41	eggNOG-mapper	877414.ATWA01000019_gene2050	Phage minor structural protein	NA
UHGV-2105219_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2105219_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2105219_41	COG	COG4926	Phage-related protein	NA
UHGV-2105219_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2105219_44	KOfam	K06330	cotH; spore coat protein H	NA
UHGV-2105219_44	PHROG	phrog_27151	NA	unknown function
UHGV-2105219_44	UniRef90	UniRef90_UPI000DAAC3BB	CotH kinase family protein	NA
UHGV-2105219_44	eggNOG-mapper	1121101.HMPREF1532_03306	CotH kinase protein	NA
UHGV-2105219_44	Pfam	PF08757	CotH kinase protein	CotH
UHGV-2105219_44	COG	COG5295	Autotransporter adhesin	NA
UHGV-2105219_45	PHROG	phrog_1863	NA	unknown function
UHGV-2105219_45	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-2105219_45	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2105219_46	PHROG	phrog_11126	NA	unknown function
UHGV-2105219_46	UniRef90	UniRef90_A0A329U6P9	NA	NA
UHGV-2105219_46	eggNOG-mapper	1235790.C805_03609	NA	NA
UHGV-2105219_46	Pfam	PF14367	NA	DUF4411
UHGV-2105219_46	COG	COG1487	Ribonuclease/mRNA interferase VapC, contains PIN domain	NA
UHGV-2105219_46	Structural annotation	PF14367, MF_00265, NF010285, COG3744	NA	NA
UHGV-2105219_47	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-2105219_47	UniRef90	UniRef90_A0A1V0QCD3	Zn peptidase	NA
UHGV-2105219_47	eggNOG-mapper	718252.FP2_17040	NA	NA
UHGV-2105219_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2105219_47	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2105219_47	Structural annotation	PF01381, PF06114, MF_00535, NF041951, COG2856, COG1476	NA	NA