UHGV-2105813

Genome information

Genome length 20,093 bps

CDS count 24

Completeness 58.90% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-2105813
vOTU ID	vOTU-041888
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029532\|Ga0244902_100093\|provirus_2_20094
BioSample	SAMEA3708746
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - plasmid or chromosomal
viralVerify score	-1.98
Jumbo phage	No

Genome content
Genome length	20,093 bps
GC content	45.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	87.82%
Average CDS length	737.88 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2105813_1	eggNOG-mapper	1160721.RBI_I01194	NA	NA
UHGV-2105813_1	Pfam	PF14199	NA	DUF4317
UHGV-2105813_2	PHROG	phrog_104	portal protein	head and packaging
UHGV-2105813_2	UniRef90	UniRef90_A0A373V3S0	Phage portal protein	NA
UHGV-2105813_2	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2105813_2	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2105813_3	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-2105813_3	UniRef90	UniRef90_UPI001F3BD4CE	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2105813_3	eggNOG-mapper	1214184.ALKY01000039_gene923	NA	NA
UHGV-2105813_4	eggNOG-mapper	936596.HMPREF1495_2378	NA	NA
UHGV-2105813_6	PHROG	phrog_17688	NA	unknown function
UHGV-2105813_6	UniRef90	UniRef90_A0A373V412	Terminase	NA
UHGV-2105813_6	eggNOG-mapper	665950.HMPREF1025_02532	phage terminase, large subunit	NA
UHGV-2105813_6	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2105813_6	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2105813_7	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-2105813_7	UniRef90	UniRef90_A0A7Z2B590	NA	NA
UHGV-2105813_7	eggNOG-mapper	1280698.AUJS01000007_gene1037	NA	NA
UHGV-2105813_7	Pfam	PF14265	NA	DUF4355
UHGV-2105813_7	Structural annotation	PF14265	NA	NA
UHGV-2105813_8	PHROG	phrog_32396	NA	unknown function
UHGV-2105813_8	UniRef90	UniRef90_A0A373V3S9	Phage major capsid protein	NA
UHGV-2105813_8	eggNOG-mapper	936375.HMPREF1152_0679	Phage capsid family	NA
UHGV-2105813_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2105813_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2105813_8	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2105813_9	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2105813_9	UniRef90	UniRef90_R6C7E8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2105813_9	eggNOG-mapper	873448.STRPO_0287	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2105813_9	Pfam	PF09355	NA	Phage_Gp19
UHGV-2105813_9	Structural annotation	PF09355	NA	NA
UHGV-2105813_10	PHROG	phrog_501	head closure Hc1	connector
UHGV-2105813_10	UniRef90	UniRef90_R6CEU4	NA	NA
UHGV-2105813_10	eggNOG-mapper	43685.Q38120_BPR1T	NA	NA
UHGV-2105813_10	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2105813_11	PHROG	phrog_387	neck protein	connector
UHGV-2105813_11	eggNOG-mapper	1423775.BAMN01000011_gene600	NA	NA
UHGV-2105813_12	PHROG	phrog_123	tail terminator	connector
UHGV-2105813_12	UniRef90	UniRef90_A0A2A5RIK6	NA	NA
UHGV-2105813_12	eggNOG-mapper	1123263.AUKY01000068_gene495	NA	NA
UHGV-2105813_12	Structural annotation	PF06141	NA	NA
UHGV-2105813_13	PHROG	phrog_117	major tail protein	tail
UHGV-2105813_13	UniRef90	UniRef90_A0A373V4D0	Phage tail protein	NA
UHGV-2105813_13	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-2105813_13	COG	COG5492	NA	NA
UHGV-2105813_13	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2105813_14	PHROG	phrog_1526	NA	unknown function
UHGV-2105813_14	UniRef90	UniRef90_A0A0E4H642	NA	NA
UHGV-2105813_14	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-2105813_15	PHROG	phrog_1633	NA	unknown function
UHGV-2105813_15	UniRef90	UniRef90_A0A139QHL2	NA	NA
UHGV-2105813_15	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-2105813_15	Pfam	PF17318	NA	DUF5361
UHGV-2105813_15	Structural annotation	PF17318	NA	NA
UHGV-2105813_16	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2105813_16	eggNOG-mapper	585203.SMSK564_1276	phage tail tape measure protein	NA
UHGV-2105813_16	COG	COG1511	NA	NA
UHGV-2105813_16	Structural annotation	PF16535	NA	NA
UHGV-2105813_17	PHROG	phrog_1194	NA	unknown function
UHGV-2105813_17	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-2105813_17	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2105813_18	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-2105813_18	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-2105813_18	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2105813_20	PHROG	phrog_13256	NA	unknown function
UHGV-2105813_20	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-2105813_21	PHROG	phrog_1863	NA	unknown function
UHGV-2105813_21	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2105813_22	KOfam	K07273	acm; lysozyme	NA
UHGV-2105813_22	PHROG	phrog_291	endolysin	lysis
UHGV-2105813_22	UniRef90	UniRef90_A0A1C6IMI8	Autolytic lysozyme	NA
UHGV-2105813_22	eggNOG-mapper	246199.CUS_5914	hydrolase, family 25	NA
UHGV-2105813_22	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2105813_22	Pfam	PF01476	LysM domain	LysM
UHGV-2105813_22	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2105813_22	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2105813_23	KOfam	K02529	lacI, galR; LacI family transcriptional regulator	NA
UHGV-2105813_23	PHROG	phrog_5594	NA	unknown function
UHGV-2105813_23	UniRef90	UniRef90_W0U967	GGDEF domain-containing protein	NA
UHGV-2105813_23	eggNOG-mapper	1160721.RBI_II00612	diguanylate cyclase	NA
UHGV-2105813_23	Pfam	PF13377	Periplasmic binding protein-like domain	Peripla_BP_3
UHGV-2105813_23	Pfam	PF00990	Diguanylate cyclase, GGDEF domain	GGDEF
UHGV-2105813_23	NCBIFam	TIGR00254.1	diguanylate cyclase	NA
UHGV-2105813_23	COG	COG1609	DNA-binding transcriptional regulator, LacI/PurR family	NA
UHGV-2105813_24	UniRef90	UniRef90_E9SCY0	Putative lipoprotein	NA
UHGV-2105813_24	eggNOG-mapper	1160721.RBI_II00613	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation	NA
UHGV-2105813_24	COG	COG0760	Peptidyl-prolyl isomerase, parvulin family	NA