UHGV-2106641

Genome information

Genome length 39,786 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9693

Prediction confidence Confident

Genome information
Genome ID	UHGV-2106641
vOTU ID	vOTU-014538
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029573\|Ga0245101_100340\|provirus_11183_54659
BioSample	SAMEA3449153
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9693
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.52
Jumbo phage	No

Genome content
Genome length	39,786 bps
GC content	57.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.70%
Average CDS length	590.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2106641_1	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-2106641_1	PHROG	phrog_14556	NA	unknown function
UHGV-2106641_1	UniRef90	UniRef90_W0FML5	Metallo-beta-lactamase family protein	NA
UHGV-2106641_1	eggNOG-mapper	1499684.CCNP01000023_gene3230	Metallo-beta-lactamase superfamily	NA
UHGV-2106641_1	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-2106641_1	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-2106641_2	PHROG	phrog_297	holin	lysis
UHGV-2106641_2	UniRef90	UniRef90_A0A1W2A7S4	Holin, phage phi LC3 family	NA
UHGV-2106641_2	eggNOG-mapper	936375.HMPREF1152_1091	Bacteriophage holin	NA
UHGV-2106641_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2106641_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2106641_2	COG	COG5546	NA	NA
UHGV-2106641_2	Structural annotation	COG5546	NA	NA
UHGV-2106641_3	eggNOG-mapper	1123075.AUDP01000020_gene1531	NA	NA
UHGV-2106641_4	Structural annotation	PF06347, COG4991	NA	NA
UHGV-2106641_5	PHROG	phrog_1382	NA	unknown function
UHGV-2106641_5	eggNOG-mapper	1410650.JHWL01000003_gene2818	NA	NA
UHGV-2106641_5	Structural annotation	NF040910	NA	NA
UHGV-2106641_7	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2106641_7	UniRef90	UniRef90_UPI001E585BFA	NA	NA
UHGV-2106641_7	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-2106641_7	Pfam	PF14359	NA	DUF4406
UHGV-2106641_7	Structural annotation	PF14359, COG3613	NA	NA
UHGV-2106641_8	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-2106641_8	Structural annotation	PF14686, TIGR03000, COG2512	NA	NA
UHGV-2106641_9	PHROG	phrog_6427	NA	unknown function
UHGV-2106641_9	UniRef90	UniRef90_UPI001C994436	tail fiber protein	NA
UHGV-2106641_9	eggNOG-mapper	743719.PaelaDRAFT_5673	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2106641_9	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2106641_10	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-2106641_10	UniRef90	UniRef90_A0A1B3WMA0	Cyclic nucleotide-binding domain-containing protein	NA
UHGV-2106641_10	eggNOG-mapper	189425.PGRAT_19210	Prophage endopeptidase tail	NA
UHGV-2106641_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2106641_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2106641_10	COG	COG4926	Phage-related protein	NA
UHGV-2106641_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2106641_12	PHROG	phrog_240	head protein	head and packaging
UHGV-2106641_12	UniRef90	UniRef90_A0A1B1INQ1	B-glycanase	NA
UHGV-2106641_12	eggNOG-mapper	1430331.EP10_10445	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-2106641_12	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-2106641_12	Structural annotation	PF12571	NA	NA
UHGV-2106641_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2106641_13	UniRef90	UniRef90_A0A1W1UYY4	Phage tail protein	NA
UHGV-2106641_13	eggNOG-mapper	1304880.JAGB01000002_gene2207	NA	NA
UHGV-2106641_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2106641_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-2106641_13	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-2106641_14	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-2106641_14	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-2106641_14	UniRef90	UniRef90_UPI00164CD6DF	phage tail tape measure protein	NA
UHGV-2106641_14	eggNOG-mapper	1408437.JNJN01000030_gene1055	Phage-related minor tail protein	NA
UHGV-2106641_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2106641_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2106641_14	COG	COG5283	Phage-related tail protein	NA
UHGV-2106641_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2106641_16	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-2106641_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2106641_17	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2106641_17	UniRef90	UniRef90_A0A6S6XGD0	Phage antirepressor Ant	NA
UHGV-2106641_17	eggNOG-mapper	525246.HMPREF0058_0721	BRO family, N-terminal domain	NA
UHGV-2106641_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2106641_17	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2106641_17	COG	COG3617	Prophage antirepressor	NA
UHGV-2106641_17	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-2106641_19	UniRef90	UniRef90_A0A3Q8S914	CopG family transcriptional regulator	NA
UHGV-2106641_19	eggNOG-mapper	1122918.KB907267_gene2	NA	NA
UHGV-2106641_19	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-2106641_19	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-2106641_20	PHROG	phrog_88	major tail protein	tail
UHGV-2106641_20	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-2106641_20	eggNOG-mapper	508419.F8J168_9CAUD	NA	NA
UHGV-2106641_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2106641_22	eggNOG-mapper	742738.HMPREF9460_04074	NA	NA
UHGV-2106641_23	PHROG	phrog_25	head closure Hc1	connector
UHGV-2106641_23	UniRef90	UniRef90_UPI00102FD6ED	head-tail adaptor protein	NA
UHGV-2106641_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2106641_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2106641_24	PHROG	phrog_442	head-tail adaptor	connector
UHGV-2106641_24	UniRef90	UniRef90_UPI001E285ACE	head-tail connector protein	NA
UHGV-2106641_24	eggNOG-mapper	1449126.JQKL01000051_gene3168	Phage gp6-like head-tail connector protein	NA
UHGV-2106641_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2106641_24	NCBIFam	TIGR02215.1	phage conserved hypothetical protein, phiE125 gp8 family	NA
UHGV-2106641_24	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-2106641_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-2106641_27	UniRef90	UniRef90_A0A1V4VRT0	Phage capsid family protein	NA
UHGV-2106641_27	eggNOG-mapper	1121324.CLIT_8c00760	phage major capsid protein, HK97 family	NA
UHGV-2106641_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2106641_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2106641_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2106641_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2106641_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2106641_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2106641_28	UniRef90	UniRef90_A0A1V5WAY6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2106641_28	eggNOG-mapper	1209989.TepiRe1_2604	Serine dehydrogenase proteinase	NA
UHGV-2106641_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2106641_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2106641_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-2106641_29	UniRef90	UniRef90_A0A1V5WBB3	Phage portal protein	NA
UHGV-2106641_29	eggNOG-mapper	665956.HMPREF1032_02267	Phage portal protein, HK97 family	NA
UHGV-2106641_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2106641_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2106641_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2106641_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2106641_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2106641_30	UniRef90	UniRef90_UPI00164ABF0B	terminase large subunit	NA
UHGV-2106641_30	eggNOG-mapper	1122919.KB905559_gene1359	Terminase	NA
UHGV-2106641_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2106641_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2106641_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2106641_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2106641_31	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2106641_31	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-2106641_31	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-2106641_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2106641_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2106641_35	eggNOG-mapper	1123288.SOV_6c01520	sigma factor activity	NA
UHGV-2106641_35	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2106641_35	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2106641_35	Structural annotation	PF07374, MF_00674, TIGR02984, COG2739	NA	NA
UHGV-2106641_36	PHROG	phrog_8887	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2106641_36	UniRef90	UniRef90_A0A3E3IE18	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-2106641_36	eggNOG-mapper	575593.HMPREF0491_00338	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2106641_36	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2106641_36	Structural annotation	COG1724	NA	NA
UHGV-2106641_37	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-2106641_37	UniRef90	UniRef90_A0A3E3IE27	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2106641_37	eggNOG-mapper	411483.FAEPRAA2165_01698	HicB family	NA
UHGV-2106641_37	Pfam	PF05534	HicB family	HicB
UHGV-2106641_37	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-2106641_37	Structural annotation	PF21748, PF05534, NF041264, COG4226	NA	NA
UHGV-2106641_39	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2106641_39	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2106641_39	UniRef90	UniRef90_A0A1S6ISJ4	Replicative DNA helicase	NA
UHGV-2106641_39	eggNOG-mapper	696369.KI912183_gene2194	Participates in initiation and elongation during chromosome replication	NA
UHGV-2106641_39	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2106641_39	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2106641_39	COG	COG0305	Replicative DNA helicase	NA
UHGV-2106641_39	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2106641_40	PHROG	phrog_16304	NA	unknown function
UHGV-2106641_40	UniRef90	UniRef90_A0A417HNC3	NA	NA
UHGV-2106641_40	Pfam	PF19808	NA	DUF6291
UHGV-2106641_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2106641_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2106641_41	UniRef90	UniRef90_A0A8A5CM78	Single-stranded DNA-binding protein	NA
UHGV-2106641_41	eggNOG-mapper	203119.Cthe_1350	Single-strand binding protein family	NA
UHGV-2106641_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2106641_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2106641_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2106641_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2106641_41	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2106641_44	PHROG	phrog_398	NA	unknown function
UHGV-2106641_44	UniRef90	UniRef90_UPI000489F9F0	putative HNHc nuclease	NA
UHGV-2106641_44	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-2106641_44	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-2106641_44	Structural annotation	PF16784	NA	NA
UHGV-2106641_47	PHROG	phrog_15609	NA	unknown function
UHGV-2106641_47	UniRef90	UniRef90_UPI00140878D5	NA	NA
UHGV-2106641_47	eggNOG-mapper	913865.DOT_1300	NA	NA
UHGV-2106641_47	Pfam	PF11300	NA	DUF3102
UHGV-2106641_47	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-2106641_47	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-2106641_48	PHROG	phrog_8470	NA	unknown function
UHGV-2106641_48	UniRef90	UniRef90_A0A7D7A2W9	PcfJ domain-containing protein	NA
UHGV-2106641_48	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-2106641_48	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2106641_48	Structural annotation	PF14284	NA	NA
UHGV-2106641_49	eggNOG-mapper	1123288.SOV_1c10500	NA	NA
UHGV-2106641_54	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2106641_56	UniRef90	UniRef90_A0A4S2AFF4	Arc family DNA-binding protein	NA
UHGV-2106641_56	Structural annotation	PF12441, NF041793, COG4877	NA	NA
UHGV-2106641_57	UniRef90	UniRef90_A0A4S2AF34	Arc family DNA-binding protein	NA
UHGV-2106641_57	eggNOG-mapper	632292.Calhy_0359	NA	NA
UHGV-2106641_57	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-2106641_58	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2106641_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2106641_58	UniRef90	UniRef90_A0A8F8Q668	Helix-turn-helix transcriptional regulator	NA
UHGV-2106641_58	eggNOG-mapper	1382304.JNIL01000001_gene3508	Helix-turn-helix XRE-family like proteins	NA
UHGV-2106641_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2106641_58	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-2106641_58	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-2106641_59	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2106641_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2106641_59	UniRef90	UniRef90_UPI001C10ECCC	helix-turn-helix domain-containing protein	NA
UHGV-2106641_59	eggNOG-mapper	644966.Tmar_0014	sequence-specific DNA binding	NA
UHGV-2106641_59	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2106641_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2106641_59	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2106641_59	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2106641_60	PHROG	phrog_87	metallo-protease	other
UHGV-2106641_60	UniRef90	UniRef90_UPI000B35A4DF	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2106641_60	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-2106641_60	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2106641_60	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2106641_60	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2106641_62	Structural annotation	PF06865, MF_01537, NF007875, COG3123	NA	NA