UHGV-2107036

Genome information

Genome length 33,469 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-2107036
vOTU ID	vOTU-060163
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029559\|Ga0244915_100020\|provirus_81028_121830
BioSample	SAMEA3708759
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.95
Jumbo phage	No

Genome content
Genome length	33,469 bps
GC content	41.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.08%
Average CDS length	586.25 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2107036_1	PHROG	phrog_443	holin	lysis
UHGV-2107036_1	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-2107036_1	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-2107036_1	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2107036_1	Structural annotation	PF16945	NA	NA
UHGV-2107036_2	PHROG	phrog_937	hemolysin	other
UHGV-2107036_4	PHROG	phrog_9886	NA	unknown function
UHGV-2107036_4	UniRef90	UniRef90_A0A374E8F3	Peptidase S74 domain-containing protein	NA
UHGV-2107036_4	eggNOG-mapper	938289.CAJN020000007_gene306	Phage minor structural protein	NA
UHGV-2107036_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2107036_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2107036_4	COG	COG4926	Phage-related protein	NA
UHGV-2107036_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2107036_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2107036_5	UniRef90	UniRef90_UPI001D5BF297	mtfA protein	NA
UHGV-2107036_5	eggNOG-mapper	1235793.C809_01929	phage tail	NA
UHGV-2107036_5	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2107036_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-2107036_5	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-2107036_6	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-2107036_6	UniRef90	UniRef90_A0A8J8MNB7	Phage tail tape measure protein	NA
UHGV-2107036_6	eggNOG-mapper	457396.CSBG_01057	tape measure	NA
UHGV-2107036_6	COG	COG5283	Phage-related tail protein	NA
UHGV-2107036_7	UniRef90	UniRef90_A0A0D0RHE1	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-2107036_8	PHROG	phrog_1021	NA	unknown function
UHGV-2107036_8	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-2107036_9	PHROG	phrog_885	major tail protein	tail
UHGV-2107036_9	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-2107036_9	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2107036_10	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-2107036_10	Structural annotation	PF12691	NA	NA
UHGV-2107036_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2107036_11	UniRef90	UniRef90_A0A374UQG1	HK97 gp10 family phage protein	NA
UHGV-2107036_11	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-2107036_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2107036_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2107036_12	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-2107036_12	UniRef90	UniRef90_UPI001373E6F4	head-tail adaptor protein	NA
UHGV-2107036_12	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-2107036_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2107036_13	PHROG	phrog_1236	head protein	head and packaging
UHGV-2107036_13	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-2107036_13	Structural annotation	PF05135	NA	NA
UHGV-2107036_14	PHROG	phrog_10541	NA	unknown function
UHGV-2107036_14	eggNOG-mapper	1122918.KB907248_gene4497	NA	NA
UHGV-2107036_15	PHROG	phrog_212	major head protein	head and packaging
UHGV-2107036_15	UniRef90	UniRef90_UPI001C105D30	phage capsid protein	NA
UHGV-2107036_15	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-2107036_15	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2107036_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2107036_16	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-2107036_16	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-2107036_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2107036_16	Structural annotation	PF06810	NA	NA
UHGV-2107036_17	UniRef90	UniRef90_A0A1Y4VHQ3	Transposase	NA
UHGV-2107036_17	eggNOG-mapper	1048834.TC41_1787	NA	NA
UHGV-2107036_18	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2107036_18	UniRef90	UniRef90_UPI00189FDDA6	minor capsid protein	NA
UHGV-2107036_18	eggNOG-mapper	1235800.C819_02238	Phage Mu protein F like protein	NA
UHGV-2107036_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2107036_18	COG	COG2369	NA	NA
UHGV-2107036_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-2107036_19	UniRef90	UniRef90_U2Q3Z0	Putative phage portal protein, SPP1 Gp6	NA
UHGV-2107036_19	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2107036_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2107036_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2107036_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2107036_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2107036_20	UniRef90	UniRef90_U2RK66	Phage terminase, large subunit, PBSX family	NA
UHGV-2107036_20	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-2107036_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2107036_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2107036_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2107036_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-2107036_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2107036_21	PHROG	phrog_1233	NA	unknown function
UHGV-2107036_21	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-2107036_21	Structural annotation	PF13058	NA	NA
UHGV-2107036_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2107036_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2107036_22	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-2107036_22	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-2107036_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2107036_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2107036_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2107036_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2107036_23	UniRef90	UniRef90_A0A173S7S0	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA
UHGV-2107036_23	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-2107036_23	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2107036_23	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2107036_24	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-2107036_26	PHROG	phrog_25176	NA	unknown function
UHGV-2107036_26	eggNOG-mapper	397290.C810_01476	NA	NA
UHGV-2107036_27	eggNOG-mapper	760568.Desku_0913	NA	NA
UHGV-2107036_28	KOfam	K24451	zim; modification methylase	NA
UHGV-2107036_28	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2107036_28	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-2107036_28	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-2107036_28	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2107036_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2107036_28	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2107036_28	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-2107036_29	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2107036_29	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-2107036_29	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-2107036_29	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2107036_29	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2107036_30	PHROG	phrog_874	NA	unknown function
UHGV-2107036_30	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-2107036_30	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-2107036_30	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2107036_31	UniRef90	UniRef90_R7QYD6	DNA-directed RNA polymerase subunit alpha	NA
UHGV-2107036_31	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-2107036_31	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-2107036_31	Structural annotation	PF03118, NF005841	NA	NA
UHGV-2107036_34	eggNOG-mapper	397288.C806_00101	NA	NA
UHGV-2107036_39	PHROG	phrog_16304	NA	unknown function
UHGV-2107036_39	UniRef90	UniRef90_A0A173S8B3	NA	NA
UHGV-2107036_39	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-2107036_39	Pfam	PF19808	NA	DUF6291
UHGV-2107036_39	Structural annotation	PF19808	NA	NA
UHGV-2107036_40	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2107036_40	UniRef90	UniRef90_A0A1C5MBR6	Endodeoxyribonuclease RusA	NA
UHGV-2107036_40	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2107036_40	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2107036_40	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2107036_42	PHROG	phrog_7566	NA	unknown function
UHGV-2107036_42	UniRef90	UniRef90_A0A412KF94	Phosphoenolpyruvate carboxykinase	NA
UHGV-2107036_42	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-2107036_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2107036_43	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-2107036_44	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2107036_44	UniRef90	UniRef90_A0A173S979	ERF superfamily	NA
UHGV-2107036_44	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-2107036_44	Pfam	PF04404	ERF superfamily	ERF
UHGV-2107036_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2107036_44	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2107036_45	PHROG	phrog_674	NA	unknown function
UHGV-2107036_45	UniRef90	UniRef90_A0A3R6B153	NA	NA
UHGV-2107036_45	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-2107036_45	Pfam	PF07083	NA	DUF1351
UHGV-2107036_45	Structural annotation	PF07083	NA	NA
UHGV-2107036_48	Structural annotation	PF12750	NA	NA
UHGV-2107036_53	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-2107036_53	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-2107036_53	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-2107036_53	Structural annotation	PF05339, NF041951, COG3655	NA	NA