UHGV-2107693

Genome information

Genome length 34,081 bps

CDS count 49

Completeness 95.94% (high-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-2107693
vOTU ID	vOTU-065494
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029533\|Ga0245046_100185\|provirus_30892_64972
BioSample	SAMEA3708890
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.24
Jumbo phage	No

Genome content
Genome length	34,081 bps
GC content	40.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.65%
Average CDS length	632.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2107693_1	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-2107693_1	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-2107693_1	UniRef90	UniRef90_A0A2N0UK65	Sigma-24	NA
UHGV-2107693_1	eggNOG-mapper	411474.COPEUT_02341	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-2107693_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-2107693_1	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-2107693_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2107693_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2107693_1	Structural annotation	PF07638, MF_00245, TIGR02954, COG1595	NA	NA
UHGV-2107693_2	KOfam	K14059	int; integrase	NA
UHGV-2107693_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2107693_2	UniRef90	UniRef90_A0A373XME4	Site-specific integrase	NA
UHGV-2107693_2	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-2107693_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2107693_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2107693_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2107693_3	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-2107693_4	PHROG	phrog_1914	NA	unknown function
UHGV-2107693_4	UniRef90	UniRef90_A0A373XNL4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2107693_4	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2107693_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2107693_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2107693_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2107693_5	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-2107693_5	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-2107693_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2107693_5	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-2107693_6	UniRef90	UniRef90_UPI001494A832	helix-turn-helix domain-containing protein	NA
UHGV-2107693_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2107693_6	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2107693_7	PHROG	phrog_3882	NA	unknown function
UHGV-2107693_8	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2107693_8	UniRef90	UniRef90_A0A413K8G3	NA	NA
UHGV-2107693_8	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-2107693_8	Structural annotation	COG2250	NA	NA
UHGV-2107693_9	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-2107693_9	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2107693_9	UniRef90	UniRef90_A0A374N3U7	XRE family transcriptional regulator	NA
UHGV-2107693_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2107693_9	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2107693_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2107693_12	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-2107693_12	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2107693_14	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2107693_14	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-2107693_14	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2107693_14	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2107693_17	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2107693_17	UniRef90	UniRef90_A0A8J6P193	AAA family ATPase	NA
UHGV-2107693_17	eggNOG-mapper	1232453.BAIF02000010_gene3337	AAA domain	NA
UHGV-2107693_17	Pfam	PF13479	AAA domain	AAA_24
UHGV-2107693_17	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2107693_18	PHROG	phrog_18107	NA	unknown function
UHGV-2107693_18	UniRef90	UniRef90_UPI0004855F5F	NA	NA
UHGV-2107693_18	eggNOG-mapper	1200557.JHWV01000001_gene292	NA	NA
UHGV-2107693_18	Structural annotation	PF05037	NA	NA
UHGV-2107693_19	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2107693_19	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2107693_19	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-2107693_19	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2107693_19	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2107693_19	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2107693_19	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2107693_19	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2107693_19	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2107693_21	PHROG	phrog_16304	NA	unknown function
UHGV-2107693_21	Pfam	PF19808	NA	DUF6291
UHGV-2107693_22	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2107693_22	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2107693_22	UniRef90	UniRef90_A0A1C6JHY9	DNA helicase	NA
UHGV-2107693_22	eggNOG-mapper	1238186.AOCN01000015_gene812	Participates in initiation and elongation during chromosome replication	NA
UHGV-2107693_22	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2107693_22	COG	COG0305	Replicative DNA helicase	NA
UHGV-2107693_22	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2107693_25	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-2107693_25	Structural annotation	PF15597	NA	NA
UHGV-2107693_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2107693_27	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-2107693_27	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-2107693_27	Pfam	PF07374	NA	DUF1492
UHGV-2107693_27	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-2107693_28	PHROG	phrog_8680	NA	unknown function
UHGV-2107693_28	UniRef90	UniRef90_A0A373KTP5	NA	NA
UHGV-2107693_28	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2107693_28	Pfam	PF14386	NA	DUF4417
UHGV-2107693_28	Structural annotation	PF14386	NA	NA
UHGV-2107693_29	PHROG	phrog_9479	NA	unknown function
UHGV-2107693_29	UniRef90	UniRef90_A0A2N0UXN8	Ntox24 domain-containing protein	NA
UHGV-2107693_29	Pfam	PF15529	Bacterial toxin 24	Ntox24
UHGV-2107693_29	Structural annotation	PF15529	NA	NA
UHGV-2107693_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2107693_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2107693_30	UniRef90	UniRef90_A0A2N0UXP4	Terminase small subunit	NA
UHGV-2107693_30	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-2107693_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2107693_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2107693_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2107693_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2107693_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2107693_31	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-2107693_31	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-2107693_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2107693_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-2107693_31	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2107693_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-2107693_32	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-2107693_32	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-2107693_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2107693_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2107693_33	UniRef90	UniRef90_A0A373KU77	Minor capsid protein	NA
UHGV-2107693_33	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2107693_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2107693_33	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2107693_33	Structural annotation	PF06152	NA	NA
UHGV-2107693_34	PHROG	phrog_20195	NA	unknown function
UHGV-2107693_35	PHROG	phrog_2616	NA	unknown function
UHGV-2107693_35	Structural annotation	PF01281	NA	NA
UHGV-2107693_36	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2107693_36	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-2107693_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-2107693_37	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-2107693_37	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-2107693_37	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2107693_38	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-2107693_39	PHROG	phrog_8710	NA	unknown function
UHGV-2107693_39	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-2107693_39	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2107693_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2107693_40	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-2107693_41	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2107693_41	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-2107693_41	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-2107693_41	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2107693_41	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2107693_42	PHROG	phrog_820	major tail protein	tail
UHGV-2107693_42	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-2107693_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2107693_43	PHROG	phrog_8300	NA	unknown function
UHGV-2107693_43	eggNOG-mapper	483218.BACPEC_01148	NA	NA
UHGV-2107693_43	Structural annotation	PF06854	NA	NA
UHGV-2107693_44	PHROG	phrog_8355	NA	unknown function
UHGV-2107693_44	UniRef90	UniRef90_UPI001C0B4BD8	Gp15 family bacteriophage protein	NA
UHGV-2107693_44	eggNOG-mapper	1262449.CP6013_3207	NA	NA
UHGV-2107693_45	PHROG	phrog_5319	outer membrane protein	other
UHGV-2107693_45	UniRef90	UniRef90_A0A1Q6JN93	zinc_ribbon_2 domain-containing protein	NA
UHGV-2107693_45	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-2107693_45	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2107693_45	COG	COG3103	NA	NA
UHGV-2107693_45	Structural annotation	PF03843, PF12773, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-2107693_46	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2107693_46	UniRef90	UniRef90_A0A2N0UYY1	Phage-related protein	NA
UHGV-2107693_46	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-2107693_46	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-2107693_46	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2107693_47	PHROG	phrog_1194	NA	unknown function
UHGV-2107693_47	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-2107693_47	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-2107693_47	Pfam	PF20458	NA	DUF6711
UHGV-2107693_47	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2107693_48	Structural annotation	PF14594, NF033848, COG3500	NA	NA