UHGV-2108200

Genome information

vOTU vOTU-041902

Genome length 25,718 bps

CDS count 47

Completeness 60.28% (medium-quality)

geNomad score 0.9718

Prediction confidence Confident

Genome information
Genome ID	UHGV-2108200
vOTU ID	vOTU-041902
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029560\|Ga0244856_100649\|provirus_3_29419
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9718
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.03
Jumbo phage	No

Genome content
Genome length	25,718 bps
GC content	50.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	88.44%
Average CDS length	487.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2108200_1	PHROG	phrog_158	major tail protein	tail
UHGV-2108200_1	UniRef90	UniRef90_A0A4P1AST2	Ig-like domain-containing protein	NA
UHGV-2108200_1	eggNOG-mapper	573.JG24_11020	NA	NA
UHGV-2108200_1	Structural annotation	PF16461, PF13895, MF_04116, TIGR02126, COG5437	NA	NA
UHGV-2108200_2	PHROG	phrog_347	tail terminator	connector
UHGV-2108200_2	UniRef90	UniRef90_UPI0012B9FC5B	NA	NA
UHGV-2108200_2	eggNOG-mapper	573.JG24_11015	Structural component (Phage or Prophage Related)	NA
UHGV-2108200_2	Structural annotation	PF11367	NA	NA
UHGV-2108200_3	PHROG	phrog_23409	NA	unknown function
UHGV-2108200_3	UniRef90	UniRef90_UPI0007CBB79D	HK97 gp10 family phage protein	NA
UHGV-2108200_3	eggNOG-mapper	573.JG24_11010	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2108200_3	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2108200_3	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2108200_3	Structural annotation	TIGR01725	NA	NA
UHGV-2108200_4	PHROG	phrog_25	head closure Hc1	connector
UHGV-2108200_4	UniRef90	UniRef90_A0A170RNN6	Head-tail adaptor protein	NA
UHGV-2108200_4	eggNOG-mapper	573.JG24_11005	head-tail adaptor	NA
UHGV-2108200_4	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2108200_4	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2108200_4	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2108200_4	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2108200_5	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2108200_5	UniRef90	UniRef90_A0A859X296	Phage gp6-like head-tail connector protein	NA
UHGV-2108200_5	eggNOG-mapper	640513.Entas_3076	Phage gp6-like head-tail connector protein	NA
UHGV-2108200_5	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2108200_5	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2108200_5	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2108200_6	PHROG	phrog_21989	NA	unknown function
UHGV-2108200_6	UniRef90	UniRef90_Q8HAD1	Sb7	NA
UHGV-2108200_6	eggNOG-mapper	1216966.BAUC01000041_gene2872	NA	NA
UHGV-2108200_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-2108200_7	UniRef90	UniRef90_E6WKD7	Phage major capsid protein, HK97 family	NA
UHGV-2108200_7	eggNOG-mapper	640513.Entas_3078	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-2108200_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2108200_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2108200_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2108200_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2108200_8	KOfam	K06904	NA	NA
UHGV-2108200_8	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2108200_8	UniRef90	UniRef90_UPI00129CC7C8	HK97 family phage prohead protease	NA
UHGV-2108200_8	eggNOG-mapper	640513.Entas_3079	Caudovirus prohead serine protease	NA
UHGV-2108200_8	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2108200_8	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2108200_8	COG	COG3740	Phage head maturation protease	NA
UHGV-2108200_8	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2108200_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-2108200_9	UniRef90	UniRef90_A0A237PU11	Phage portal protein	NA
UHGV-2108200_9	eggNOG-mapper	640513.Entas_3080	TIGRFAM Phage portal protein, HK97	NA
UHGV-2108200_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2108200_9	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2108200_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2108200_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2108200_10	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-2108200_10	UniRef90	UniRef90_A0A376KNN8	NA	NA
UHGV-2108200_10	eggNOG-mapper	90371.CY43_10640	NA	NA
UHGV-2108200_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2108200_11	UniRef90	UniRef90_E6WKD3	Terminase	NA
UHGV-2108200_11	eggNOG-mapper	1440052.EAKF1_ch0466c	Phage Terminase	NA
UHGV-2108200_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2108200_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2108200_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2108200_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2108200_12	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2108200_12	UniRef90	UniRef90_A0A2I8XQZ3	Phage terminase small subunit P27 family	NA
UHGV-2108200_12	eggNOG-mapper	1524467.IV04_14600	Phage terminase, small subunit	NA
UHGV-2108200_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2108200_12	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2108200_12	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2108200_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2108200_13	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2108200_13	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2108200_13	UniRef90	UniRef90_A0A377Z6P6	DNAse	NA
UHGV-2108200_13	eggNOG-mapper	640513.Entas_3084	HNH endonuclease	NA
UHGV-2108200_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2108200_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2108200_13	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2108200_14	eggNOG-mapper	35703.DQ02_24225	NA	NA
UHGV-2108200_14	Structural annotation	PF11730	NA	NA
UHGV-2108200_15	eggNOG-mapper	66269.NL54_16860	NA	NA
UHGV-2108200_16	PHROG	phrog_36556	NA	unknown function
UHGV-2108200_17	PHROG	phrog_571	NA	unknown function
UHGV-2108200_17	UniRef90	UniRef90_UPI000EAE7CD1	NA	NA
UHGV-2108200_17	eggNOG-mapper	573.JG24_10960	NA	NA
UHGV-2108200_17	Pfam	PF10834	NA	DUF2560
UHGV-2108200_17	Structural annotation	PF10834	NA	NA
UHGV-2108200_18	PHROG	phrog_3909	NA	unknown function
UHGV-2108200_19	PHROG	phrog_19753	NA	unknown function
UHGV-2108200_21	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-2108200_21	eggNOG-mapper	573.JG24_10940	NA	NA
UHGV-2108200_22	PHROG	phrog_1356	holin	lysis
UHGV-2108200_22	UniRef90	UniRef90_A0A0M2KDI3	Membrane protein	NA
UHGV-2108200_22	eggNOG-mapper	1076550.LH22_18045	NA	NA
UHGV-2108200_23	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-2108200_23	PHROG	phrog_12853	NA	unknown function
UHGV-2108200_23	UniRef90	UniRef90_A0A2A5MEF5	PG_binding_3 domain-containing protein	NA
UHGV-2108200_23	eggNOG-mapper	393305.YE1815	secretion activating protein	NA
UHGV-2108200_23	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-2108200_23	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-2108200_23	COG	COG3926	Lysozyme family protein	NA
UHGV-2108200_23	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-2108200_24	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-2108200_24	UniRef90	UniRef90_A0A377ZE09	Phage holin, lambda family	NA
UHGV-2108200_24	eggNOG-mapper	1080067.BAZH01000011_gene681	Phage holin family (Lysis protein S)	NA
UHGV-2108200_24	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-2108200_24	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-2108200_24	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-2108200_25	PHROG	phrog_16834	NA	unknown function
UHGV-2108200_25	UniRef90	UniRef90_A0A327ICX0	RHIM domain-containing protein	NA
UHGV-2108200_25	eggNOG-mapper	1121939.L861_17555	NA	NA
UHGV-2108200_26	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-2108200_26	UniRef90	UniRef90_A0A0J2GSI8	NA	NA
UHGV-2108200_26	eggNOG-mapper	90371.CY43_13955	NA	NA
UHGV-2108200_26	Pfam	PF06576	NA	DUF1133
UHGV-2108200_26	Structural annotation	PF06576	NA	NA
UHGV-2108200_27	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2108200_27	UniRef90	UniRef90_A0A1X9TPI1	NA	NA
UHGV-2108200_27	eggNOG-mapper	35703.DQ02_24170	NA	NA
UHGV-2108200_27	Pfam	PF06147	NA	DUF968
UHGV-2108200_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2108200_27	Structural annotation	PF06147	NA	NA
UHGV-2108200_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2108200_28	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-2108200_28	UniRef90	UniRef90_UPI000D0B150C	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2108200_28	eggNOG-mapper	1166130.H650_06940	Endodeoxyribonuclease RusA	NA
UHGV-2108200_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2108200_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2108200_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2108200_29	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-2108200_29	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2108200_29	UniRef90	UniRef90_UPI000E351A6E	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-2108200_29	eggNOG-mapper	1115512.EH105704_01_01470	Methylates DNA within the sequence GATC and protects the DNA from cleavage by the restriction endonuclease MboI. Although it shares sequence specificity with a number of type II restriction endonucleases and methylases, it is thought to act in postreplication mismatch repair rather than as a part of a restriction modification system. May also play a role in DNA replication	NA
UHGV-2108200_29	PADLOC	oMTase_00018	orphan methyltransferase	RM
UHGV-2108200_29	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2108200_29	COG	COG0338	DNA-adenine methylase	NA
UHGV-2108200_30	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-2108200_30	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2108200_30	UniRef90	UniRef90_A0A377V944	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2108200_30	eggNOG-mapper	371042.NG99_23650	Site-specific DNA-methyltransferase (Adenine-specific)	NA
UHGV-2108200_30	PADLOC	oMTase_00018	orphan methyltransferase	RM
UHGV-2108200_30	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2108200_30	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-2108200_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2108200_31	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2108200_31	UniRef90	UniRef90_A0A7U7F836	Phg_2220_C domain-containing protein	NA
UHGV-2108200_31	eggNOG-mapper	1399774.JDWH01000016_gene3451	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-2108200_31	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-2108200_31	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-2108200_31	Structural annotation	PF13463, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-2108200_32	PHROG	phrog_1343	NA	unknown function
UHGV-2108200_32	UniRef90	UniRef90_A0A2J4YCY3	NA	NA
UHGV-2108200_32	eggNOG-mapper	1440052.EAKF1_ch1459c	NA	NA
UHGV-2108200_32	Pfam	PF13973	NA	DUF4222
UHGV-2108200_33	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-2108200_33	eggNOG-mapper	399742.Ent638_2618	NA	NA
UHGV-2108200_33	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-2108200_33	NCBIFam	NF041471.1	YmfL family putative regulatory protein	NA
UHGV-2108200_33	Structural annotation	PF06892, NF041471	NA	NA
UHGV-2108200_34	KOfam	K22302	dicC; transcriptional repressor of cell division inhibition gene dicB	NA
UHGV-2108200_34	PHROG	phrog_409	transcriptional regulator	transcription regulation
UHGV-2108200_34	UniRef90	UniRef90_A0A486V7F9	DNA-binding transcriptional regulator DicC	NA
UHGV-2108200_34	eggNOG-mapper	1115515.EV102420_11_00450	DNA-binding transcriptional regulator Cro	NA
UHGV-2108200_34	Pfam	PF14549	DNA-binding transcriptional regulator Cro	P22_Cro
UHGV-2108200_34	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-2108200_34	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-2108200_35	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2108200_35	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2108200_35	UniRef90	UniRef90_A0A0P8H2I4	Repressor	NA
UHGV-2108200_35	eggNOG-mapper	571.MC52_01565	Peptidase S24-like	NA
UHGV-2108200_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2108200_35	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2108200_35	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2108200_35	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-2108200_36	PHROG	phrog_6315	NA	unknown function
UHGV-2108200_36	eggNOG-mapper	1443113.LC20_01734	NA	NA
UHGV-2108200_36	Structural annotation	PF18186, NF033632	NA	NA
UHGV-2108200_37	KOfam	K03554	rdgC; recombination associated protein RdgC	NA
UHGV-2108200_37	PHROG	phrog_724	exonuclease recombination-associated	DNA, RNA and nucleotide metabolism
UHGV-2108200_37	UniRef90	UniRef90_A0A377ZDN7	Recombination-associated protein RdgC	NA
UHGV-2108200_37	eggNOG-mapper	910964.GEAM_4276	Putative exonuclease, RdgC	NA
UHGV-2108200_37	Pfam	PF04381	Putative exonuclease, RdgC	RdgC
UHGV-2108200_37	COG	COG2974	DNA recombination-dependent growth factor RdgC	NA
UHGV-2108200_38	PHROG	phrog_15091	NA	unknown function
UHGV-2108200_39	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2108200_39	PHROG	phrog_25613	NA	unknown function
UHGV-2108200_39	UniRef90	UniRef90_UPI000D64580F	ParB/RepB/Spo0J family partition protein	NA
UHGV-2108200_39	eggNOG-mapper	573.JG24_10860	NA	NA
UHGV-2108200_39	Structural annotation	PF02195, PF08535, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2108200_40	PHROG	phrog_2936	NA	unknown function
UHGV-2108200_41	PHROG	phrog_28696	NA	unknown function
UHGV-2108200_41	eggNOG-mapper	1348114.OM33_08605	NA	NA
UHGV-2108200_42	UniRef90	UniRef90_UPI001D18EC5A	NA	NA
UHGV-2108200_43	PHROG	phrog_1714	NA	unknown function
UHGV-2108200_43	eggNOG-mapper	173443.Q8HAI2_BPST6	NA	NA
UHGV-2108200_44	PHROG	phrog_28084	NA	unknown function
UHGV-2108200_44	UniRef90	UniRef90_UPI001D1174C0	NA	NA
UHGV-2108200_44	eggNOG-mapper	1224318.DT73_00280	NA	NA
UHGV-2108200_44	Pfam	PF04447	dATP/dGTP pyrophosphohydrolase	dATP-dGTP_PPHyd
UHGV-2108200_45	PHROG	phrog_14816	NA	unknown function
UHGV-2108200_46	PHROG	phrog_1266	excisionase	integration and excision
UHGV-2108200_46	UniRef90	UniRef90_A0A2A2BCV8	NA	NA
UHGV-2108200_46	eggNOG-mapper	1115515.EV102420_11_00520	NA	NA
UHGV-2108200_46	Pfam	PF13986	NA	DUF4224
UHGV-2108200_46	Structural annotation	PF13986	NA	NA
UHGV-2108200_47	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-2108200_47	PHROG	phrog_1	integrase	integration and excision
UHGV-2108200_47	UniRef90	UniRef90_A0A377ZCG1	Site-specific recombinase, phage integrase family protein	NA
UHGV-2108200_47	eggNOG-mapper	90371.CY43_10795	Phage integrase family	NA
UHGV-2108200_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2108200_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2108200_47	Structural annotation	PF00589, PF12834, PF12167, MF_01807, NF001399, NF041908, COG4974	NA	NA