UHGV-2108735

Genome information

vOTU vOTU-041907

Genome length 30,185 bps

CDS count 39

Completeness 78.79% (medium-quality)

geNomad score 0.9667

Prediction confidence Confident

Genome information
Genome ID	UHGV-2108735
vOTU ID	vOTU-041907
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029562\|Ga0245122_100258\|provirus_270_30454
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9667
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.28
Jumbo phage	No

Genome content
Genome length	30,185 bps
GC content	41.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	88.92%
Average CDS length	691.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2108735_1	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-2108735_1	PHROG	phrog_6320	tail fiber protein	tail
UHGV-2108735_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2108735_2	PHROG	phrog_35892	NA	unknown function
UHGV-2108735_2	eggNOG-mapper	553177.CAPSP0001_1731	COG3209 Rhs family protein	NA
UHGV-2108735_2	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2108735_2	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-2108735_2	COG	COG3209	NA	NA
UHGV-2108735_2	Structural annotation	PF13306	NA	NA
UHGV-2108735_4	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2108735_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2108735_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2108735_8	UniRef90	UniRef90_R5XN19	NA	NA
UHGV-2108735_8	eggNOG-mapper	1095750.HMPREF9970_1673	Endodeoxyribonuclease RusA	NA
UHGV-2108735_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2108735_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2108735_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2108735_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2108735_9	UniRef90	UniRef90_UPI00156FA9A2	terminase large subunit	NA
UHGV-2108735_9	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-2108735_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2108735_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2108735_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2108735_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2108735_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-2108735_10	UniRef90	UniRef90_R6Z5U3	Phage portal protein	NA
UHGV-2108735_10	eggNOG-mapper	1536774.H70357_10620	Phage portal protein	NA
UHGV-2108735_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2108735_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2108735_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2108735_11	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2108735_11	PHROG	phrog_1794	amidase	lysis
UHGV-2108735_11	UniRef90	UniRef90_A0A0D0SH99	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2108735_11	eggNOG-mapper	573061.Clocel_3960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2108735_11	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2108735_11	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2108735_11	Structural annotation	PF01510, PF01471, MF_04111, COG5632, COG3409	NA	NA
UHGV-2108735_12	KOfam	K06904	NA	NA
UHGV-2108735_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2108735_12	UniRef90	UniRef90_A0A415G8A3	HK97 family phage prohead protease	NA
UHGV-2108735_12	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-2108735_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2108735_12	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2108735_12	COG	COG3740	Phage head maturation protease	NA
UHGV-2108735_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2108735_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-2108735_13	UniRef90	UniRef90_UPI00069461CE	phage major capsid protein	NA
UHGV-2108735_13	eggNOG-mapper	1157490.EL26_20710	Phage capsid family	NA
UHGV-2108735_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2108735_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2108735_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2108735_13	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2108735_14	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-2108735_15	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-2108735_15	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-2108735_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2108735_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2108735_16	Structural annotation	TIGR01725	NA	NA
UHGV-2108735_17	Structural annotation	PF05657	NA	NA
UHGV-2108735_18	PHROG	phrog_88	major tail protein	tail
UHGV-2108735_18	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-2108735_18	eggNOG-mapper	1120971.AUCA01000037_gene2904	Phage tail tube protein	NA
UHGV-2108735_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2108735_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2108735_20	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-2108735_20	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2108735_20	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-2108735_20	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-2108735_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2108735_20	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2108735_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2108735_21	UniRef90	UniRef90_UPI0004805F22	phage tail family protein	NA
UHGV-2108735_21	eggNOG-mapper	665950.HMPREF1025_02008	Phage tail protein	NA
UHGV-2108735_21	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2108735_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-2108735_21	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-2108735_22	PHROG	phrog_538	minor tail protein	tail
UHGV-2108735_22	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2108735_22	eggNOG-mapper	411460.RUMTOR_01333	NA	NA
UHGV-2108735_22	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2108735_25	KOfam	K03581	recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]	NA
UHGV-2108735_25	PHROG	phrog_4412	exonuclease V	DNA, RNA and nucleotide metabolism
UHGV-2108735_25	UniRef90	UniRef90_A0A173XIX1	Exodeoxyribonuclease V alpha chain	NA
UHGV-2108735_25	eggNOG-mapper	1235799.C818_02707	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity	NA
UHGV-2108735_25	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-2108735_25	Pfam	PF13604	AAA domain	AAA_30
UHGV-2108735_25	Pfam	PF13538	UvrD-like helicase C-terminal domain	UvrD_C_2
UHGV-2108735_25	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2108735_27	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-2108735_28	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2108735_28	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2108735_28	UniRef90	UniRef90_UPI0013723B81	AAA family ATPase	NA
UHGV-2108735_28	eggNOG-mapper	610130.Closa_3867	AAA domain	NA
UHGV-2108735_28	Pfam	PF13481	AAA domain	AAA_25
UHGV-2108735_28	COG	COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	NA
UHGV-2108735_28	Structural annotation	PF03796, MF_01498, NF006443, TIGR02719, COG3598	NA	NA
UHGV-2108735_29	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2108735_29	UniRef90	UniRef90_R6V942	ERCC4 domain-containing protein	NA
UHGV-2108735_29	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-2108735_32	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2108735_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2108735_32	UniRef90	UniRef90_A0A379QU07	Putative repressor protein C	NA
UHGV-2108735_32	eggNOG-mapper	645991.Sgly_0746	Peptidase S24-like	NA
UHGV-2108735_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2108735_32	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2108735_33	eggNOG-mapper	1064535.MELS_1123	NA	NA
UHGV-2108735_39	KOfam	K14059	int; integrase	NA
UHGV-2108735_39	PHROG	phrog_1	integrase	integration and excision
UHGV-2108735_39	UniRef90	UniRef90_A0A1H3VVX6	Integrase	NA
UHGV-2108735_39	eggNOG-mapper	1410612.JNKO01000002_gene2429	DNA integration	NA
UHGV-2108735_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2108735_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2108735_39	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA