UHGV-2108966

Genome information

Genome length 35,231 bps

CDS count 41

Completeness 59.66% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-2108966
vOTU ID	vOTU-018474
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029559\|Ga0244915_100446\|provirus_8668_43898
BioSample	SAMEA3708759
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.17
Jumbo phage	No

Genome content
Genome length	35,231 bps
GC content	52.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.54%
Average CDS length	815.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2108966_1	UniRef90	UniRef90_R5NI33	Putative integral membrane protein	NA
UHGV-2108966_2	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2108966_2	PHROG	phrog_34860	NA	unknown function
UHGV-2108966_2	UniRef90	UniRef90_A0A3E2V689	SAM-dependent DNA methyltransferase	NA
UHGV-2108966_2	eggNOG-mapper	1408311.JNJM01000031_gene2476	HsdM N-terminal domain	NA
UHGV-2108966_2	PADLOC	MTase_I_00012	Type I methyltransferase	RM
UHGV-2108966_2	Pfam	PF12161	HsdM N-terminal domain	HsdM_N
UHGV-2108966_2	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2108966_2	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2108966_2	Structural annotation	PF02384, PF12161, MF_01862, TIGR00497, COG0286	NA	NA
UHGV-2108966_3	PHROG	phrog_2801	NA	unknown function
UHGV-2108966_3	UniRef90	UniRef90_UPI0018A0AE32	AAA family ATPase	NA
UHGV-2108966_3	eggNOG-mapper	1408324.JNJK01000006_gene1351	AAA domain	NA
UHGV-2108966_3	Pfam	PF13166	AAA domain	AAA_13
UHGV-2108966_3	COG	COG4694	Wobble nucleotide-excising tRNase	NA
UHGV-2108966_3	Structural annotation	PF13166, MF_00449, TIGR03185, COG4694	NA	NA
UHGV-2108966_4	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-2108966_4	UniRef90	UniRef90_A0A3E2B425	DNA-binding protein	NA
UHGV-2108966_4	eggNOG-mapper	1408311.JNJM01000031_gene2474	Helix-turn-helix domain	NA
UHGV-2108966_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2108966_4	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2108966_4	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2108966_4	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2108966_5	eggNOG-mapper	1408324.JNJK01000006_gene1349	TIR domain	NA
UHGV-2108966_5	COG	COG4916	NA	NA
UHGV-2108966_6	eggNOG-mapper	1232449.BAHV02000021_gene1066	NA	NA
UHGV-2108966_7	PHROG	phrog_13787	NA	unknown function
UHGV-2108966_7	UniRef90	UniRef90_UPI00189EEDD9	ECF-type sigma factor	NA
UHGV-2108966_7	eggNOG-mapper	1127695.HMPREF9163_00401	NA	NA
UHGV-2108966_7	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-2108966_7	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2108966_7	Structural annotation	PF13412, MF_00959, NF006146, COG1191	NA	NA
UHGV-2108966_8	eggNOG-mapper	498761.HM1_2932	NA	NA
UHGV-2108966_9	PHROG	phrog_408	NA	unknown function
UHGV-2108966_9	UniRef90	UniRef90_UPI00189E5E1A	DNA ligase	NA
UHGV-2108966_9	eggNOG-mapper	457415.HMPREF1006_00440	NA	NA
UHGV-2108966_10	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2108966_10	UniRef90	UniRef90_UPI001644C826	NA	NA
UHGV-2108966_10	eggNOG-mapper	498761.HM1_2934	NA	NA
UHGV-2108966_10	Pfam	PF10926	NA	DUF2800
UHGV-2108966_10	COG	COG2887	RecB family exonuclease	NA
UHGV-2108966_10	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2108966_11	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2108966_11	UniRef90	UniRef90_A0A410PTP6	NA	NA
UHGV-2108966_11	eggNOG-mapper	457415.HMPREF1006_00442	NA	NA
UHGV-2108966_11	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2108966_11	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2108966_13	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2108966_13	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2108966_13	UniRef90	UniRef90_D4MIP7	DNA polymerase I-3'-5' exonuclease and polymerase domains	NA
UHGV-2108966_13	eggNOG-mapper	1410624.JNKK01000017_gene1958	DNA polymerase A domain	NA
UHGV-2108966_13	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2108966_13	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2108966_13	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2108966_14	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2108966_14	eggNOG-mapper	552396.HMPREF0863_01419	NA	NA
UHGV-2108966_14	Pfam	PF14359	NA	DUF4406
UHGV-2108966_14	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2108966_15	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2108966_15	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2108966_15	UniRef90	UniRef90_UPI0016453462	phage/plasmid primase, P4 family	NA
UHGV-2108966_15	eggNOG-mapper	1410624.JNKK01000017_gene1960	D5 N terminal like	NA
UHGV-2108966_15	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2108966_15	Pfam	PF19263	NA	DUF5906
UHGV-2108966_15	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2108966_15	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2108966_15	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2108966_15	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-2108966_16	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2108966_16	UniRef90	UniRef90_UPI001646F6DA	VRR-NUC domain-containing protein	NA
UHGV-2108966_16	eggNOG-mapper	665956.HMPREF1032_02284	VRR_NUC	NA
UHGV-2108966_16	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2108966_16	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2108966_17	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2108966_17	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2108966_17	UniRef90	UniRef90_UPI0016449736	DEAD/DEAH box helicase	NA
UHGV-2108966_17	eggNOG-mapper	665956.HMPREF1032_02283	helicase	NA
UHGV-2108966_17	PADLOC	DpdE_00011	DpdE	DPD
UHGV-2108966_17	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2108966_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2108966_17	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2108966_17	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2108966_18	PHROG	phrog_7024	NA	unknown function
UHGV-2108966_18	eggNOG-mapper	994573.T472_0211090	NA	NA
UHGV-2108966_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2108966_19	UniRef90	UniRef90_A0A7X6CWS4	NA	NA
UHGV-2108966_19	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-2108966_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2108966_19	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2108966_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2108966_20	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2108966_20	UniRef90	UniRef90_R7ELH0	HNH endonuclease domain protein	NA
UHGV-2108966_20	eggNOG-mapper	1120978.KB894083_gene917	HNH nucleases	NA
UHGV-2108966_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2108966_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2108966_20	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2108966_21	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2108966_21	UniRef90	UniRef90_A0A7X5J169	Terminase	NA
UHGV-2108966_21	eggNOG-mapper	665950.HMPREF1025_02640	NA	NA
UHGV-2108966_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2108966_22	PHROG	phrog_1569	NA	unknown function
UHGV-2108966_22	UniRef90	UniRef90_A0A316RBE0	S-adenosylmethionine synthetase	NA
UHGV-2108966_22	eggNOG-mapper	665950.HMPREF1025_02641	S-adenosylmethionine synthetase, N-terminal domain	NA
UHGV-2108966_22	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-2108966_22	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-2108966_22	Structural annotation	PF01941, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-2108966_23	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2108966_23	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2108966_23	UniRef90	UniRef90_R7ELG5	Methyltransferase	NA
UHGV-2108966_23	eggNOG-mapper	665950.HMPREF1025_02642	DNA methylase	NA
UHGV-2108966_23	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2108966_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2108966_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2108966_23	COG	COG0863	DNA modification methylase	NA
UHGV-2108966_23	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2108966_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2108966_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2108966_24	UniRef90	UniRef90_R6C729	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2108966_24	eggNOG-mapper	1216932.CM240_1398	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2108966_24	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-2108966_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2108966_24	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2108966_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2108966_24	Structural annotation	TIGR00675	NA	NA
UHGV-2108966_25	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2108966_25	UniRef90	UniRef90_R7ER16	Virulence-related protein	NA
UHGV-2108966_25	eggNOG-mapper	243164.DET0065	NA	NA
UHGV-2108966_25	AcrCatalog	cluster_14489	NA	NA
UHGV-2108966_26	PHROG	phrog_3782	NA	unknown function
UHGV-2108966_26	UniRef90	UniRef90_R7ET71	NA	NA
UHGV-2108966_26	eggNOG-mapper	1111454.HMPREF1250_1744	NA	NA
UHGV-2108966_26	Pfam	PF14192	NA	DUF4314
UHGV-2108966_26	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2108966_26	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-2108966_27	PHROG	phrog_8677	NA	unknown function
UHGV-2108966_27	UniRef90	UniRef90_A0A410PTJ9	NA	NA
UHGV-2108966_27	eggNOG-mapper	665950.HMPREF1025_02707	NA	NA
UHGV-2108966_27	Pfam	PF16468	NA	DUF5049
UHGV-2108966_27	Structural annotation	PF16468	NA	NA
UHGV-2108966_28	PHROG	phrog_4709	NA	unknown function
UHGV-2108966_28	eggNOG-mapper	693746.OBV_41590	NA	NA
UHGV-2108966_28	AcrCatalog	cluster_3300	NA	NA
UHGV-2108966_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2108966_29	UniRef90	UniRef90_R6CIH0	Putative phage terminase large subunit	NA
UHGV-2108966_29	eggNOG-mapper	552396.HMPREF0863_01433	large subunit	NA
UHGV-2108966_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2108966_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2108966_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2108966_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2108966_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-2108966_30	UniRef90	UniRef90_A0A1E3BX67	Phage portal protein	NA
UHGV-2108966_30	eggNOG-mapper	1216932.CM240_0618	Phage portal protein, HK97 family	NA
UHGV-2108966_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2108966_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2108966_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2108966_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2108966_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2108966_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2108966_31	UniRef90	UniRef90_R6CEE1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2108966_31	eggNOG-mapper	1216932.CM240_0619	Belongs to the peptidase S14 family	NA
UHGV-2108966_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2108966_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2108966_31	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2108966_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-2108966_32	UniRef90	UniRef90_R6C4C2	Phage major capsid protein HK97 family	NA
UHGV-2108966_32	eggNOG-mapper	908340.HMPREF9406_0168	Phage major capsid protein, HK97 family	NA
UHGV-2108966_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2108966_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2108966_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2108966_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2108966_33	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2108966_33	UniRef90	UniRef90_UPI0018977BF5	head-tail connector protein	NA
UHGV-2108966_33	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-2108966_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2108966_33	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2108966_33	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2108966_34	UniRef90	UniRef90_R6C714	Phage head-tail adaptor putative	NA
UHGV-2108966_34	eggNOG-mapper	1120978.KB894083_gene903	Phage head-tail joining protein	NA
UHGV-2108966_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2108966_34	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2108966_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2108966_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2108966_35	UniRef90	UniRef90_A0A412AY96	HK97 gp10 family phage protein	NA
UHGV-2108966_35	eggNOG-mapper	1120978.KB894083_gene902	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2108966_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2108966_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2108966_35	Structural annotation	TIGR01725	NA	NA
UHGV-2108966_36	PHROG	phrog_78	tail terminator	connector
UHGV-2108966_36	eggNOG-mapper	1347392.CCEZ01000015_gene2833	High confidence in function and specificity	NA
UHGV-2108966_36	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2108966_37	PHROG	phrog_88	major tail protein	tail
UHGV-2108966_37	UniRef90	UniRef90_R7EV20	Phi13 family phage major tail protein	NA
UHGV-2108966_37	eggNOG-mapper	1216932.CM240_0623	phage major tail protein, phi13 family	NA
UHGV-2108966_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2108966_37	COG	COG5492	NA	NA
UHGV-2108966_37	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2108966_38	PHROG	phrog_2115	tail protein	tail
UHGV-2108966_38	eggNOG-mapper	1216932.CM240_0624	NA	NA
UHGV-2108966_38	Structural annotation	PF11836	NA	NA
UHGV-2108966_39	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2108966_39	UniRef90	UniRef90_UPI001F2AF393	phage tail protein	NA
UHGV-2108966_39	eggNOG-mapper	1120978.KB894083_gene897	Phage-related minor tail protein	NA
UHGV-2108966_39	COG	COG5283	Phage-related tail protein	NA
UHGV-2108966_39	Structural annotation	MF_04138, COG5280	NA	NA
UHGV-2108966_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2108966_40	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-2108966_40	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-2108966_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2108966_40	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2108966_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-2108966_40	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2108966_41	UniRef90	UniRef90_F3B337	HTH marR-type domain-containing protein	NA
UHGV-2108966_41	eggNOG-mapper	575593.HMPREF0491_01451	MarR family	NA
UHGV-2108966_41	Pfam	PF01047	MarR family	MarR
UHGV-2108966_41	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA