UHGV-2109030

Genome information

Genome length 26,225 bps

CDS count 39

Completeness 86.85% (medium-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-2109030
vOTU ID	vOTU-034553
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029575\|Ga0244903_100100\|provirus_167791_194015
BioSample	SAMEA3708747
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.3
Jumbo phage	No

Genome content
Genome length	26,225 bps
GC content	51.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	93.74%
Average CDS length	635.69 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2109030_1	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2109030_1	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2109030_1	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-2109030_1	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-2109030_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2109030_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2109030_1	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-2109030_7	PHROG	phrog_750	NA	unknown function
UHGV-2109030_7	eggNOG-mapper	478749.BRYFOR_08527	NA	NA
UHGV-2109030_7	Structural annotation	PF03444, COG5045	NA	NA
UHGV-2109030_11	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2109030_11	UniRef90	UniRef90_UPI0013E03EAA	helix-turn-helix domain-containing protein	NA
UHGV-2109030_11	eggNOG-mapper	226185.EF_2027	Helix-turn-helix domain	NA
UHGV-2109030_11	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2109030_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2109030_11	Structural annotation	PF13730, NF040939, COG3355	NA	NA
UHGV-2109030_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2109030_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2109030_12	UniRef90	UniRef90_A0A1C6BCB2	DNA helicase	NA
UHGV-2109030_12	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-2109030_12	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2109030_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2109030_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-2109030_12	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-2109030_13	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2109030_13	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-2109030_13	UniRef90	UniRef90_A0A2V2GM11	Methyltransferase	NA
UHGV-2109030_13	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-2109030_13	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-2109030_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2109030_13	COG	COG0863	DNA modification methylase	NA
UHGV-2109030_13	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-2109030_14	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2109030_14	UniRef90	UniRef90_A0A658JIA4	Radical SAM protein (Fragment)	NA
UHGV-2109030_14	eggNOG-mapper	97138.C820_02863	NA	NA
UHGV-2109030_14	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2109030_15	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2109030_15	UniRef90	UniRef90_UPI000D1F2B94	radical SAM protein	NA
UHGV-2109030_15	eggNOG-mapper	585503.HMPREF7545_1721	NA	NA
UHGV-2109030_15	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2109030_15	Structural annotation	PF04055, MF_01865, TIGR04013, COG0320	NA	NA
UHGV-2109030_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2109030_17	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-2109030_17	Structural annotation	PF01446, NF041486	NA	NA
UHGV-2109030_18	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-2109030_18	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-2109030_18	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-2109030_18	Structural annotation	PF14205	NA	NA
UHGV-2109030_19	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2109030_19	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2109030_19	UniRef90	UniRef90_UPI0005937579	HNH endonuclease	NA
UHGV-2109030_19	eggNOG-mapper	887929.HMP0721_1270	HNH nucleases	NA
UHGV-2109030_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2109030_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2109030_20	PHROG	phrog_1066	NA	unknown function
UHGV-2109030_20	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-2109030_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2109030_21	UniRef90	UniRef90_UPI00073E3369	terminase large subunit	NA
UHGV-2109030_21	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-2109030_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2109030_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2109030_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2109030_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2109030_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-2109030_22	UniRef90	UniRef90_A0A8J6PFS2	Phage portal protein	NA
UHGV-2109030_22	eggNOG-mapper	411471.SUBVAR_05850	Phage portal protein	NA
UHGV-2109030_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2109030_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2109030_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2109030_23	KOfam	K06904	NA	NA
UHGV-2109030_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2109030_23	UniRef90	UniRef90_UPI00195E3654	HK97 family phage prohead protease	NA
UHGV-2109030_23	eggNOG-mapper	742740.HMPREF9474_04305	Phage prohead protease, HK97 family	NA
UHGV-2109030_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2109030_23	COG	COG3740	Phage head maturation protease	NA
UHGV-2109030_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2109030_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-2109030_24	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-2109030_24	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-2109030_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2109030_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2109030_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2109030_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2109030_25	PHROG	phrog_5223	neck protein	connector
UHGV-2109030_25	UniRef90	UniRef90_UPI00073F29ED	head-tail connector protein	NA
UHGV-2109030_25	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-2109030_25	Structural annotation	TIGR01560	NA	NA
UHGV-2109030_26	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2109030_26	UniRef90	UniRef90_D1PND3	Putative phage head-tail adaptor	NA
UHGV-2109030_26	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-2109030_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2109030_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2109030_27	UniRef90	UniRef90_UPI000C7BEE97	HK97 gp10 family phage protein	NA
UHGV-2109030_27	eggNOG-mapper	1235793.C809_04324	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2109030_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2109030_27	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2109030_28	PHROG	phrog_78	tail terminator	connector
UHGV-2109030_28	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-2109030_28	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-2109030_28	Structural annotation	PF20765	NA	NA
UHGV-2109030_29	PHROG	phrog_88	major tail protein	tail
UHGV-2109030_29	UniRef90	UniRef90_A0A1C5W5R6	Phage major tail protein, phi13 family	NA
UHGV-2109030_29	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-2109030_29	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2109030_29	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2109030_30	PHROG	phrog_709	NA	unknown function
UHGV-2109030_30	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-2109030_31	PHROG	phrog_3033	NA	unknown function
UHGV-2109030_31	eggNOG-mapper	1235799.C818_01010	NA	NA
UHGV-2109030_32	KOfam	K16808	NUMA1; nuclear mitotic apparatus protein 1	NA
UHGV-2109030_32	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-2109030_32	eggNOG-mapper	888049.HMPREF8578_0706	Phage tail tape measure protein	NA
UHGV-2109030_32	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-2109030_32	Structural annotation	PF20155	NA	NA
UHGV-2109030_33	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2109030_33	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-2109030_33	eggNOG-mapper	1121342.AUCO01000004_gene648	tail component	NA
UHGV-2109030_33	COG	COG4722	Phage-related protein YomH	NA
UHGV-2109030_33	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2109030_34	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2109030_34	UniRef90	UniRef90_A0A2V2F1H4	Prophage_tail domain-containing protein	NA
UHGV-2109030_34	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-2109030_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2109030_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2109030_34	COG	COG4926	Phage-related protein	NA
UHGV-2109030_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2109030_36	PHROG	phrog_27545	NA	unknown function
UHGV-2109030_36	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-2109030_36	eggNOG-mapper	1195236.CTER_1364	chitinase activity	NA
UHGV-2109030_36	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2109030_36	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-2109030_37	PHROG	phrog_199	holin	lysis
UHGV-2109030_37	UniRef90	UniRef90_A0A3E2TQU1	Holin	NA
UHGV-2109030_37	eggNOG-mapper	1298920.KI911353_gene4833	Bacteriophage holin family	NA
UHGV-2109030_37	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2109030_37	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2109030_37	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2109030_37	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2109030_38	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2109030_38	PHROG	phrog_15001	endolysin	lysis
UHGV-2109030_38	UniRef90	UniRef90_A0A3D4MUC8	Amidase	NA
UHGV-2109030_38	eggNOG-mapper	1235835.C814_01292	Ami_2	NA
UHGV-2109030_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2109030_38	COG	COG1388	LysM repeat	NA
UHGV-2109030_39	COG	COG3328	Transposase (or an inactivated derivative)	NA