UHGV-2109382

Genome information

Genome length 29,348 bps

CDS count 45

Completeness 79.60% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-2109382
vOTU ID	vOTU-035251
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029523\|Ga0244821_100858
BioSample	SAMEA3708672
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.95
Jumbo phage	No

Genome content
Genome length	29,348 bps
GC content	41.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.14%
Average CDS length	618.40 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2109382_1	eggNOG-mapper	742740.HMPREF9474_03128	NA	NA
UHGV-2109382_3	PHROG	phrog_30930	NA	unknown function
UHGV-2109382_3	eggNOG-mapper	1214184.ALKY01000039_gene933	NA	NA
UHGV-2109382_4	UniRef90	UniRef90_UPI001C8DF57A	NA	NA
UHGV-2109382_4	Pfam	PF04448	NA	DUF551
UHGV-2109382_7	UniRef90	UniRef90_A0A3E3JY24	RNA polymerase subunit sigma-70	NA
UHGV-2109382_7	eggNOG-mapper	1232452.BAIB02000007_gene1634	NA	NA
UHGV-2109382_8	PHROG	phrog_11520	NA	unknown function
UHGV-2109382_8	eggNOG-mapper	1209989.TepiRe1_1148	NA	NA
UHGV-2109382_8	Structural annotation	PF14337	NA	NA
UHGV-2109382_10	UniRef90	UniRef90_A0A3A6K7U9	Chemotaxis protein	NA
UHGV-2109382_10	eggNOG-mapper	1232452.BAIB02000007_gene1632	NA	NA
UHGV-2109382_10	Structural annotation	NF008671, COG4710	NA	NA
UHGV-2109382_11	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2109382_11	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2109382_11	UniRef90	UniRef90_A0A3E3JYR4	HNH endonuclease	NA
UHGV-2109382_11	eggNOG-mapper	1232453.BAIF02000028_gene2717	HNH nucleases	NA
UHGV-2109382_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2109382_12	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-2109382_12	UniRef90	UniRef90_UPI001D0DE0A6	P27 family phage terminase small subunit	NA
UHGV-2109382_12	eggNOG-mapper	1232453.BAIF02000028_gene2719	Phage terminase, small subunit	NA
UHGV-2109382_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2109382_12	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2109382_13	PHROG	phrog_4914	terminase large subunit	head and packaging
UHGV-2109382_13	UniRef90	UniRef90_UPI001F506873	terminase large subunit	NA
UHGV-2109382_13	eggNOG-mapper	1232453.BAIF02000028_gene2720	Phage Terminase	NA
UHGV-2109382_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2109382_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2109382_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2109382_14	UniRef90	UniRef90_A0A3E3JYA3	Terminase large subunit	NA
UHGV-2109382_14	eggNOG-mapper	1232453.BAIF02000028_gene2720	Phage Terminase	NA
UHGV-2109382_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2109382_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2109382_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2109382_14	Structural annotation	PF20441, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2109382_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-2109382_15	UniRef90	UniRef90_A0A3E3JY23	Phage portal protein	NA
UHGV-2109382_15	eggNOG-mapper	1232453.BAIF02000028_gene2721	Phage portal protein, HK97 family	NA
UHGV-2109382_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2109382_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2109382_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2109382_15	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2109382_16	KOfam	K06904	NA	NA
UHGV-2109382_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2109382_16	UniRef90	UniRef90_A0A3E3JYG6	HK97 family phage prohead protease	NA
UHGV-2109382_16	eggNOG-mapper	1232453.BAIF02000028_gene2722	Phage prohead protease, HK97 family	NA
UHGV-2109382_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2109382_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2109382_16	COG	COG3740	Phage head maturation protease	NA
UHGV-2109382_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2109382_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-2109382_17	UniRef90	UniRef90_A0A3E3JYF5	Phage major capsid protein	NA
UHGV-2109382_17	eggNOG-mapper	1232453.BAIF02000028_gene2723	capsid protein	NA
UHGV-2109382_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2109382_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2109382_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2109382_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2109382_18	eggNOG-mapper	476272.RUMHYD_02855	NA	NA
UHGV-2109382_19	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-2109382_19	UniRef90	UniRef90_B7GIN0	Phage related protein	NA
UHGV-2109382_19	eggNOG-mapper	491915.Aflv_0665	NA	NA
UHGV-2109382_20	PHROG	phrog_2550	NA	unknown function
UHGV-2109382_20	UniRef90	UniRef90_A0A3E3JYI5	Phage gp6-like head-tail connector protein	NA
UHGV-2109382_20	eggNOG-mapper	1232453.BAIF02000028_gene2725	NA	NA
UHGV-2109382_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2109382_21	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2109382_21	UniRef90	UniRef90_A0A3E3JXZ8	Phage head-tail adapter protein	NA
UHGV-2109382_21	eggNOG-mapper	1232453.BAIF02000028_gene2726	NA	NA
UHGV-2109382_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2109382_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2109382_22	UniRef90	UniRef90_UPI000465037A	HK97 gp10 family phage protein	NA
UHGV-2109382_22	eggNOG-mapper	610130.Closa_0747	COG NOG18351 non supervised orthologous group	NA
UHGV-2109382_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2109382_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2109382_23	PHROG	phrog_78	tail terminator	connector
UHGV-2109382_23	UniRef90	UniRef90_A0A0D6DV47	Prophage pi2 protein 38	NA
UHGV-2109382_23	eggNOG-mapper	272623.L59277	NA	NA
UHGV-2109382_23	Structural annotation	PF20765	NA	NA
UHGV-2109382_24	PHROG	phrog_88	major tail protein	tail
UHGV-2109382_24	UniRef90	UniRef90_A0A3E3JY11	Phage tail protein	NA
UHGV-2109382_24	eggNOG-mapper	1232453.BAIF02000028_gene2729	phage major tail protein, phi13 family	NA
UHGV-2109382_24	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-2109382_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2109382_24	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2109382_25	PHROG	phrog_709	NA	unknown function
UHGV-2109382_25	UniRef90	UniRef90_A0A0D6DV15	Prophage pi2 protein 40	NA
UHGV-2109382_25	eggNOG-mapper	1232453.BAIF02000028_gene2730	NA	NA
UHGV-2109382_25	Structural annotation	PF19591	NA	NA
UHGV-2109382_26	PHROG	phrog_3033	NA	unknown function
UHGV-2109382_26	UniRef90	UniRef90_A0A0D6DWF5	Prophage pi2 protein 41	NA
UHGV-2109382_26	eggNOG-mapper	1158604.I591_01759	NA	NA
UHGV-2109382_27	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-2109382_27	UniRef90	UniRef90_UPI001186C34A	phage tail tape measure protein	NA
UHGV-2109382_27	eggNOG-mapper	1232453.BAIF02000028_gene2732	Phage tail tape measure protein, TP901 family	NA
UHGV-2109382_27	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2109382_27	COG	COG3953	SLT domain protein	NA
UHGV-2109382_27	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2109382_28	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-2109382_28	eggNOG-mapper	1232453.BAIF02000028_gene2732	Phage tail tape measure protein, TP901 family	NA
UHGV-2109382_28	COG	COG3953	SLT domain protein	NA
UHGV-2109382_29	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-2109382_29	UniRef90	UniRef90_A0A2T6EE98	SLT domain-containing protein	NA
UHGV-2109382_29	eggNOG-mapper	1232453.BAIF02000028_gene2732	Phage tail tape measure protein, TP901 family	NA
UHGV-2109382_29	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-2109382_29	COG	COG3953	SLT domain protein	NA
UHGV-2109382_30	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2109382_30	UniRef90	UniRef90_UPI000E429B58	phage tail family protein	NA
UHGV-2109382_30	eggNOG-mapper	1232453.BAIF02000028_gene2733	Phage tail protein	NA
UHGV-2109382_30	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2109382_30	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2109382_30	COG	COG4722	Phage-related protein YomH	NA
UHGV-2109382_30	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-2109382_31	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-2109382_31	UniRef90	UniRef90_UPI0015ECCEB6	phage tail protein	NA
UHGV-2109382_31	eggNOG-mapper	568703.LGG_01523	cellulase activity	NA
UHGV-2109382_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2109382_31	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2109382_32	PHROG	phrog_19695	NA	unknown function
UHGV-2109382_32	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-2109382_32	Structural annotation	PF19714	NA	NA
UHGV-2109382_33	PHROG	phrog_6782	tail fiber protein	tail
UHGV-2109382_33	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-2109382_33	Structural annotation	PF10651, PF20328	NA	NA
UHGV-2109382_34	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-2109382_35	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2109382_35	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-2109382_35	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-2109382_37	PHROG	phrog_21718	NA	unknown function
UHGV-2109382_37	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-2109382_38	PHROG	phrog_22984	NA	unknown function
UHGV-2109382_39	PHROG	phrog_16490	NA	unknown function
UHGV-2109382_39	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-2109382_40	PHROG	phrog_20016	NA	unknown function
UHGV-2109382_40	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-2109382_40	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2109382_40	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2109382_43	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-2109382_44	PHROG	phrog_199	holin	lysis
UHGV-2109382_44	UniRef90	UniRef90_A0A3E3JYS3	Holin	NA
UHGV-2109382_44	eggNOG-mapper	476272.RUMHYD_02872	NA	NA
UHGV-2109382_44	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2109382_44	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2109382_44	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2109382_45	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2109382_45	PHROG	phrog_3088	amidase	lysis
UHGV-2109382_45	UniRef90	UniRef90_A0A3E3JYJ7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2109382_45	eggNOG-mapper	428125.CLOLEP_00171	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2109382_45	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2109382_45	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2109382_45	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA