UHGV-2109475

Genome information

Genome length 43,705 bps

CDS count 68

Completeness 97.17% (high-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-2109475
vOTU ID	vOTU-008113
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029586\|Ga0243865_1000013\|provirus_228110_271814
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.17% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.25
Jumbo phage	No

Genome content
Genome length	43,705 bps
GC content	38.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	89.10%
Average CDS length	576.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2109475_1	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-2109475_1	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-2109475_2	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-2109475_3	PHROG	phrog_16490	NA	unknown function
UHGV-2109475_3	eggNOG-mapper	476272.RUMHYD_01954	NA	NA
UHGV-2109475_6	UniRef90	UniRef90_A0A412X6W3	Sigma70_r4_2 domain-containing protein	NA
UHGV-2109475_6	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2109475_6	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2109475_6	Structural annotation	PF08281, MF_00245, NF001075, COG2739	NA	NA
UHGV-2109475_9	PHROG	phrog_5867	endolysin	lysis
UHGV-2109475_9	UniRef90	UniRef90_A0A7X2XH64	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2109475_9	eggNOG-mapper	1262914.BN533_02021	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2109475_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2109475_9	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2109475_9	Structural annotation	MF_04111	NA	NA
UHGV-2109475_10	eggNOG-mapper	568816.Acin_1216	NA	NA
UHGV-2109475_11	PHROG	phrog_1009	NA	unknown function
UHGV-2109475_12	PHROG	phrog_1348	tail fiber protein	tail
UHGV-2109475_12	UniRef90	UniRef90_C1DBJ8	NA	NA
UHGV-2109475_12	Structural annotation	PF14301	NA	NA
UHGV-2109475_13	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2109475_14	PHROG	phrog_13589	NA	unknown function
UHGV-2109475_14	eggNOG-mapper	632245.CLP_1288	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2109475_14	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-2109475_14	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2109475_15	PHROG	phrog_1640	tail protein	tail
UHGV-2109475_15	eggNOG-mapper	1322246.BN4_12406	Belongs to the glycosyl hydrolase 28 family	NA
UHGV-2109475_15	COG	COG5434	Polygalacturonase	NA
UHGV-2109475_18	PHROG	phrog_7940	NA	unknown function
UHGV-2109475_18	UniRef90	UniRef90_A0A412X6G4	Toxin Bro	NA
UHGV-2109475_18	eggNOG-mapper	546271.Selsp_1341	BRO family, N-terminal domain	NA
UHGV-2109475_18	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2109475_18	COG	COG3617	Prophage antirepressor	NA
UHGV-2109475_18	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-2109475_20	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2109475_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2109475_20	UniRef90	UniRef90_A0A412X6X2	XRE family transcriptional regulator	NA
UHGV-2109475_20	eggNOG-mapper	340099.Teth39_0032	PFAM helix-turn-helix domain protein	NA
UHGV-2109475_20	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2109475_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2109475_20	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2109475_22	PHROG	phrog_9854	NA	unknown function
UHGV-2109475_22	UniRef90	UniRef90_A0A259UTX8	LPD38 domain-containing protein	NA
UHGV-2109475_22	eggNOG-mapper	401526.TcarDRAFT_1293	protein secretion by the type IV secretion system	NA
UHGV-2109475_22	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-2109475_22	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-2109475_22	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-2109475_23	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2109475_23	PHROG	phrog_1044	endolysin	lysis
UHGV-2109475_23	UniRef90	UniRef90_UPI001032FD1D	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-2109475_23	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2109475_23	COG	COG3108	NA	NA
UHGV-2109475_24	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-2109475_24	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-2109475_24	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-2109475_25	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-2109475_25	UniRef90	UniRef90_A0A7X2XHB5	NA	NA
UHGV-2109475_25	eggNOG-mapper	202954.BBNK01000010_gene1461	NA	NA
UHGV-2109475_25	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-2109475_25	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-2109475_26	PHROG	phrog_376	tail protein	tail
UHGV-2109475_26	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-2109475_26	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-2109475_26	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-2109475_26	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-2109475_27	PHROG	phrog_394	tail protein	tail
UHGV-2109475_27	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-2109475_27	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-2109475_28	Structural annotation	PF12949	NA	NA
UHGV-2109475_29	UniRef90	UniRef90_A0A841R587	Proline racemase	NA
UHGV-2109475_29	Structural annotation	PF21190	NA	NA
UHGV-2109475_30	PHROG	phrog_212	major head protein	head and packaging
UHGV-2109475_30	UniRef90	UniRef90_A0A077DE24	NA	NA
UHGV-2109475_30	eggNOG-mapper	699218.HMPREF0889_0284	NA	NA
UHGV-2109475_30	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-2109475_30	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2109475_31	PHROG	phrog_458	protease	other
UHGV-2109475_31	eggNOG-mapper	1401067.HMPREF0872_06800	NA	NA
UHGV-2109475_32	PHROG	phrog_528	NA	unknown function
UHGV-2109475_32	UniRef90	UniRef90_A0A2D6RTY3	Endopeptidase	NA
UHGV-2109475_32	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-2109475_33	PHROG	phrog_332	head-tail adaptor	connector
UHGV-2109475_33	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-2109475_33	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-2109475_33	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-2109475_33	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-2109475_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2109475_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2109475_35	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-2109475_35	eggNOG-mapper	585503.HMPREF7545_1731	Terminase-like family	NA
UHGV-2109475_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2109475_35	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-2109475_35	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-2109475_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2109475_36	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2109475_36	UniRef90	UniRef90_UPI00036DE524	terminase small subunit	NA
UHGV-2109475_36	eggNOG-mapper	1120978.KB894087_gene429	Terminase small subunit	NA
UHGV-2109475_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2109475_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2109475_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2109475_38	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-2109475_38	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2109475_39	Structural annotation	PF18337	NA	NA
UHGV-2109475_41	UniRef90	UniRef90_A0A412X6I8	Zinc ribbon domain-containing protein	NA
UHGV-2109475_41	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-2109475_43	PHROG	phrog_8684	NA	unknown function
UHGV-2109475_43	UniRef90	UniRef90_A0A7X2XHJ6	YopX domain-containing protein	NA
UHGV-2109475_43	eggNOG-mapper	40522.A8ASP1_BPA50	YopX protein	NA
UHGV-2109475_43	Pfam	PF09643	YopX protein	YopX
UHGV-2109475_43	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2109475_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2109475_48	PHROG	phrog_8538	NA	unknown function
UHGV-2109475_48	eggNOG-mapper	1009370.ALO_12631	NA	NA
UHGV-2109475_49	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2109475_49	UniRef90	UniRef90_A0A7X2XHL8	NA	NA
UHGV-2109475_49	eggNOG-mapper	1009370.ALO_12696	NA	NA
UHGV-2109475_49	Pfam	PF06356	NA	DUF1064
UHGV-2109475_49	Structural annotation	PF06356, NF033179	NA	NA
UHGV-2109475_50	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2109475_50	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2109475_50	UniRef90	UniRef90_A0A412X698	Methyltransferase	NA
UHGV-2109475_50	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2109475_50	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2109475_50	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2109475_50	COG	COG0863	DNA modification methylase	NA
UHGV-2109475_50	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2109475_51	Structural annotation	NF011854	NA	NA
UHGV-2109475_52	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-2109475_52	PHROG	phrog_923	NA	unknown function
UHGV-2109475_52	UniRef90	UniRef90_A0A412X6I1	Pentapeptide repeat-containing protein	NA
UHGV-2109475_52	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-2109475_52	Structural annotation	PF13599, NF011744	NA	NA
UHGV-2109475_54	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2109475_54	UniRef90	UniRef90_UPI0015D10FB3	helix-turn-helix domain-containing protein	NA
UHGV-2109475_54	eggNOG-mapper	1449126.JQKL01000003_gene1705	ROK family	NA
UHGV-2109475_54	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-2109475_54	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-2109475_56	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2109475_56	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-2109475_56	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2109475_57	PHROG	phrog_7792	NA	unknown function
UHGV-2109475_57	UniRef90	UniRef90_UPI001D07B780	RAD52 family DNA repair protein	NA
UHGV-2109475_57	eggNOG-mapper	1485543.JMME01000021_gene803	NA	NA
UHGV-2109475_57	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-2109475_58	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2109475_58	UniRef90	UniRef90_UPI001C3A3B51	Siphovirus Gp157 family protein	NA
UHGV-2109475_58	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-2109475_58	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2109475_58	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2109475_60	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2109475_60	UniRef90	UniRef90_A0A412X6A8	XRE family transcriptional regulator	NA
UHGV-2109475_60	eggNOG-mapper	936375.HMPREF1152_0655	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2109475_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2109475_60	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2109475_61	PHROG	phrog_3292	NA	unknown function
UHGV-2109475_61	UniRef90	UniRef90_A0A412X6L4	KTSC domain-containing protein	NA
UHGV-2109475_61	eggNOG-mapper	679201.HMPREF9334_01266	KTSC domain	NA
UHGV-2109475_61	Pfam	PF13619	KTSC domain	KTSC
UHGV-2109475_61	Structural annotation	PF13619	NA	NA
UHGV-2109475_65	PHROG	phrog_6058	NA	unknown function
UHGV-2109475_65	UniRef90	UniRef90_A0A101WT85	Modification methylase SinI	NA
UHGV-2109475_65	eggNOG-mapper	1238184.CM001792_gene70	NA	NA
UHGV-2109475_66	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2109475_66	UniRef90	UniRef90_E0NXN1	DNA-binding helix-turn-helix protein	NA
UHGV-2109475_66	eggNOG-mapper	864563.HMPREF9166_0598	DNA-binding helix-turn-helix protein	NA
UHGV-2109475_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2109475_66	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2109475_66	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2109475_67	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2109475_67	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2109475_67	UniRef90	UniRef90_UPI000987C3DA	XRE family transcriptional regulator	NA
UHGV-2109475_67	eggNOG-mapper	1111134.HMPREF1253_1209	Peptidase S24-like	NA
UHGV-2109475_67	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2109475_67	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2109475_67	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2109475_67	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2109475_68	KOfam	K14059	int; integrase	NA
UHGV-2109475_68	PHROG	phrog_1	integrase	integration and excision
UHGV-2109475_68	UniRef90	UniRef90_UPI000B1B52E6	tyrosine-type recombinase/integrase	NA
UHGV-2109475_68	eggNOG-mapper	1111454.HMPREF1250_0778	Belongs to the 'phage' integrase family	NA
UHGV-2109475_68	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2109475_68	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2109475_68	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA