UHGV-2109622

Genome information

Genome length 33,232 bps

CDS count 52

Completeness 95.10% (high-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-2109622
vOTU ID	vOTU-010403
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029590\|Ga0245099_1000305\|provirus_106_33337
BioSample	SAMEA3449151
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.65
Jumbo phage	No

Genome content
Genome length	33,232 bps
GC content	41.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	87.84%
Average CDS length	564.75 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2109622_1	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-2109622_3	PHROG	phrog_199	holin	lysis
UHGV-2109622_3	UniRef90	UniRef90_A0A349YRM9	Holin	NA
UHGV-2109622_3	eggNOG-mapper	411468.CLOSCI_00532	toxin secretion phage lysis holin	NA
UHGV-2109622_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2109622_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2109622_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2109622_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2109622_4	KOfam	K07273	acm; lysozyme	NA
UHGV-2109622_4	PHROG	phrog_291	endolysin	lysis
UHGV-2109622_4	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-2109622_4	eggNOG-mapper	397287.C807_01339	Glycosyl hydrolases family 25	NA
UHGV-2109622_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2109622_4	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2109622_4	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-2109622_7	PHROG	phrog_24103	NA	unknown function
UHGV-2109622_7	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-2109622_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2109622_8	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-2109622_9	PHROG	phrog_15594	NA	unknown function
UHGV-2109622_9	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-2109622_9	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-2109622_10	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-2109622_10	COG	COG4675	Phage tail collar domain	NA
UHGV-2109622_11	PHROG	phrog_11037	NA	unknown function
UHGV-2109622_11	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-2109622_11	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-2109622_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-2109622_11	Structural annotation	PF18013	NA	NA
UHGV-2109622_12	PHROG	phrog_13289	tail protein	tail
UHGV-2109622_12	UniRef90	UniRef90_A0A350VIV3	Prophage_tail domain-containing protein	NA
UHGV-2109622_12	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-2109622_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2109622_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2109622_12	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-2109622_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2109622_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2109622_13	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-2109622_13	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-2109622_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-2109622_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2109622_14	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2109622_14	UniRef90	UniRef90_A0A350VIV1	Phage tail tape measure protein	NA
UHGV-2109622_14	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-2109622_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2109622_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2109622_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2109622_16	PHROG	phrog_88	major tail protein	tail
UHGV-2109622_16	UniRef90	UniRef90_A0A1Q9J4Y1	Phage tail protein	NA
UHGV-2109622_16	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-2109622_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2109622_16	COG	COG5492	NA	NA
UHGV-2109622_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2109622_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2109622_17	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-2109622_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2109622_17	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-2109622_18	Structural annotation	PF05657	NA	NA
UHGV-2109622_19	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-2109622_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2109622_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-2109622_21	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-2109622_21	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-2109622_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2109622_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2109622_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2109622_21	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-2109622_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2109622_22	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2109622_22	UniRef90	UniRef90_A0A0M6WHX9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2109622_22	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-2109622_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2109622_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2109622_22	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2109622_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-2109622_23	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-2109622_23	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-2109622_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2109622_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2109622_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2109622_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2109622_24	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-2109622_24	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-2109622_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2109622_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2109622_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2109622_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2109622_25	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2109622_25	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-2109622_25	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-2109622_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2109622_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2109622_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2109622_27	UniRef90	UniRef90_A0A7X9DAW2	RNA polymerase subunit sigma-24	NA
UHGV-2109622_27	eggNOG-mapper	755731.Clo1100_3798	NA	NA
UHGV-2109622_27	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-2109622_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2109622_28	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-2109622_28	eggNOG-mapper	411902.CLOBOL_03891	NA	NA
UHGV-2109622_28	Structural annotation	PF21578	NA	NA
UHGV-2109622_32	eggNOG-mapper	1235798.C817_04576	NA	NA
UHGV-2109622_33	Structural annotation	NF011508	NA	NA
UHGV-2109622_35	PHROG	phrog_15077	NA	unknown function
UHGV-2109622_35	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-2109622_35	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-2109622_35	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2109622_36	PHROG	phrog_8470	NA	unknown function
UHGV-2109622_36	UniRef90	UniRef90_UPI000CDA663D	PcfJ domain-containing protein	NA
UHGV-2109622_36	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-2109622_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2109622_36	Structural annotation	PF14284	NA	NA
UHGV-2109622_37	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-2109622_38	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-2109622_38	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-2109622_41	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-2109622_48	Structural annotation	PF13560, MF_00535, NF041677, COG3655	NA	NA
UHGV-2109622_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2109622_49	UniRef90	UniRef90_A0A2N5NUM8	DNA-binding protein	NA
UHGV-2109622_49	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-2109622_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2109622_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2109622_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2109622_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2109622_50	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2109622_50	UniRef90	UniRef90_A0A0M6WJ36	HTH cro/C1-type domain-containing protein	NA
UHGV-2109622_50	eggNOG-mapper	1256908.HMPREF0373_00643	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2109622_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2109622_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2109622_51	PHROG	phrog_5783	NA	unknown function
UHGV-2109622_51	UniRef90	UniRef90_A0A0M6WJD5	NYN domain-containing protein	NA
UHGV-2109622_51	eggNOG-mapper	864563.HMPREF9166_1292	NYN domain	NA
UHGV-2109622_51	Pfam	PF01936	NYN domain	NYN
UHGV-2109622_51	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2109622_51	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-2109622_52	KOfam	K14059	int; integrase	NA
UHGV-2109622_52	PHROG	phrog_1	integrase	integration and excision
UHGV-2109622_52	UniRef90	UniRef90_A0A174GVS8	Site-specific recombinase XerD	NA
UHGV-2109622_52	eggNOG-mapper	585501.HMPREF6123_0870	Phage integrase family	NA
UHGV-2109622_52	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2109622_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2109622_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2109622_52	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA