UHGV-2110288

Genome information

Genome length 42,378 bps

CDS count 54

Completeness 96.61% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-2110288
vOTU ID	vOTU-071121
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029536\|Ga0244918_100221\|provirus_17756_60133
BioSample	SAMEA3708762
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.45
Jumbo phage	No

Genome content
Genome length	42,378 bps
GC content	40.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	88.15%
Average CDS length	695.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2110288_1	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-2110288_1	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-2110288_1	UniRef90	UniRef90_UPI0014733B06	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2110288_1	eggNOG-mapper	411474.COPEUT_02341	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-2110288_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-2110288_1	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-2110288_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2110288_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2110288_3	KOfam	K14059	int; integrase	NA
UHGV-2110288_3	PHROG	phrog_1	integrase	integration and excision
UHGV-2110288_3	UniRef90	UniRef90_A0A412L7T7	Site-specific integrase	NA
UHGV-2110288_3	eggNOG-mapper	1540257.JQMW01000011_gene2033	Phage integrase family	NA
UHGV-2110288_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2110288_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2110288_3	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2110288_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2110288_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2110288_4	UniRef90	UniRef90_A0A374NFM5	XRE family transcriptional regulator	NA
UHGV-2110288_4	eggNOG-mapper	1567011.A0A0A7RUJ5_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-2110288_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2110288_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2110288_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2110288_6	PHROG	phrog_10226	NA	unknown function
UHGV-2110288_6	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-2110288_6	Structural annotation	COG4127	NA	NA
UHGV-2110288_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2110288_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2110288_7	UniRef90	UniRef90_UPI0015F84BF4	XRE family transcriptional regulator	NA
UHGV-2110288_7	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-2110288_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2110288_7	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2110288_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2110288_7	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-2110288_8	UniRef90	UniRef90_UPI00164BE78E	helix-turn-helix domain-containing protein	NA
UHGV-2110288_8	eggNOG-mapper	999411.HMPREF1092_00882	Helix-turn-helix	NA
UHGV-2110288_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2110288_8	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-2110288_16	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2110288_18	PHROG	phrog_408	NA	unknown function
UHGV-2110288_19	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2110288_19	UniRef90	UniRef90_A0A412L7W2	NA	NA
UHGV-2110288_19	eggNOG-mapper	1151292.QEW_2472	NA	NA
UHGV-2110288_19	Pfam	PF10926	NA	DUF2800
UHGV-2110288_19	COG	COG2887	RecB family exonuclease	NA
UHGV-2110288_19	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2110288_20	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2110288_20	UniRef90	UniRef90_A0A412UNI7	NA	NA
UHGV-2110288_20	eggNOG-mapper	1123288.SOV_6c00600	NA	NA
UHGV-2110288_20	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2110288_20	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2110288_21	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2110288_21	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2110288_21	UniRef90	UniRef90_A0A412UNJ8	POLAc domain-containing protein	NA
UHGV-2110288_21	eggNOG-mapper	1274524.BSONL12_06038	DNA polymerase A domain	NA
UHGV-2110288_21	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2110288_21	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2110288_21	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2110288_22	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2110288_22	UniRef90	UniRef90_UPI001D06E26F	virulence-associated E family protein	NA
UHGV-2110288_22	eggNOG-mapper	1567012.A0A0A7RTG3_9VIRU	Virulence-associated protein E	NA
UHGV-2110288_22	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2110288_22	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2110288_23	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2110288_23	UniRef90	UniRef90_A0A412UNG8	VRR-NUC domain-containing protein	NA
UHGV-2110288_23	eggNOG-mapper	97138.C820_00219	VRR-NUC domain-containing protein	NA
UHGV-2110288_23	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2110288_24	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2110288_24	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2110288_24	UniRef90	UniRef90_A0A412L7W0	ATP-dependent helicase	NA
UHGV-2110288_24	eggNOG-mapper	97138.C820_00220	snf2 family	NA
UHGV-2110288_24	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2110288_24	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2110288_24	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2110288_24	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2110288_24	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2110288_27	Structural annotation	PF15597	NA	NA
UHGV-2110288_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2110288_29	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-2110288_29	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-2110288_29	Pfam	PF07374	NA	DUF1492
UHGV-2110288_29	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-2110288_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2110288_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2110288_30	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-2110288_30	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2110288_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2110288_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2110288_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2110288_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2110288_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2110288_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-2110288_31	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-2110288_31	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2110288_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2110288_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2110288_32	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-2110288_32	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-2110288_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2110288_32	COG	COG2369	NA	NA
UHGV-2110288_32	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-2110288_34	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2110288_34	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-2110288_34	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-2110288_35	PHROG	phrog_2616	NA	unknown function
UHGV-2110288_35	Structural annotation	PF01281	NA	NA
UHGV-2110288_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2110288_36	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-2110288_36	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2110288_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2110288_36	Structural annotation	PF06810	NA	NA
UHGV-2110288_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-2110288_37	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2110288_37	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2110288_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2110288_38	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2110288_38	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-2110288_39	PHROG	phrog_3366	NA	unknown function
UHGV-2110288_39	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2110288_39	Pfam	PF20536	NA	DUF6751
UHGV-2110288_39	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2110288_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2110288_40	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-2110288_40	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2110288_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2110288_40	Structural annotation	PF11114	NA	NA
UHGV-2110288_41	PHROG	phrog_3266	tail completion	connector
UHGV-2110288_41	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-2110288_41	Structural annotation	PF20765	NA	NA
UHGV-2110288_42	PHROG	phrog_3099	NA	unknown function
UHGV-2110288_42	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2110288_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2110288_43	PHROG	phrog_11299	NA	unknown function
UHGV-2110288_43	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2110288_43	Structural annotation	PF10666	NA	NA
UHGV-2110288_44	PHROG	phrog_706	NA	unknown function
UHGV-2110288_44	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-2110288_44	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-2110288_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2110288_44	Structural annotation	PF06854	NA	NA
UHGV-2110288_45	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-2110288_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2110288_46	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-2110288_46	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2110288_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2110288_46	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2110288_47	PHROG	phrog_1194	NA	unknown function
UHGV-2110288_47	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-2110288_47	Pfam	PF20458	NA	DUF6711
UHGV-2110288_47	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2110288_48	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2110288_49	PHROG	phrog_2012	minor tail protein	tail
UHGV-2110288_49	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-2110288_49	Structural annotation	PF10651, PF15432, PF08931, TIGR03711	NA	NA
UHGV-2110288_51	PHROG	phrog_1009	NA	unknown function
UHGV-2110288_51	UniRef90	UniRef90_A0A373XMY3	Branched-chain amino acid ABC transporter permease	NA
UHGV-2110288_51	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-2110288_52	PHROG	phrog_881	holin	lysis
UHGV-2110288_52	UniRef90	UniRef90_A0A843HKU1	Phage holin	NA
UHGV-2110288_52	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-2110288_52	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-2110288_52	Structural annotation	PF16938	NA	NA
UHGV-2110288_53	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2110288_53	PHROG	phrog_435	endolysin	lysis
UHGV-2110288_53	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-2110288_53	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2110288_53	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2110288_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2110288_53	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-2110288_54	PHROG	phrog_8614	NA	unknown function
UHGV-2110288_54	UniRef90	UniRef90_A0A374FW63	KAP NTPase domain-containing protein	NA
UHGV-2110288_54	eggNOG-mapper	1415775.U729_2995	KAP family P-loop domain	NA
UHGV-2110288_54	PADLOC	PifA	PifA	Abi
UHGV-2110288_54	Pfam	PF07693	KAP family P-loop domain	KAP_NTPase
UHGV-2110288_54	COG	COG4928	Predicted P-loop ATPase, KAP-like	NA