UHGV-2110462

Genome information

Genome length 44,239 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-2110462
vOTU ID	vOTU-063102
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029534\|Ga0245005_100442\|provirus_5288_49526
BioSample	SAMEA3708849
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.52
Jumbo phage	No

Genome content
Genome length	44,239 bps
GC content	48.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	90.69%
Average CDS length	707.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2110462_1	KOfam	K14059	int; integrase	NA
UHGV-2110462_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2110462_1	UniRef90	UniRef90_A0A3A8WHM5	Site-specific integrase	NA
UHGV-2110462_1	eggNOG-mapper	476272.RUMHYD_03619	NA	NA
UHGV-2110462_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2110462_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2110462_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2110462_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2110462_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2110462_2	PHROG	phrog_87	metallo-protease	other
UHGV-2110462_2	UniRef90	UniRef90_A0A174PSU5	Gp23-like protein	NA
UHGV-2110462_2	eggNOG-mapper	1121115.AXVN01000006_gene2176	NA	NA
UHGV-2110462_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2110462_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2110462_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2110462_3	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2110462_3	UniRef90	UniRef90_A0A174PIE4	Phage repressor	NA
UHGV-2110462_3	eggNOG-mapper	658655.HMPREF0988_02594	Helix-turn-helix	NA
UHGV-2110462_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2110462_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2110462_3	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-2110462_4	UniRef90	UniRef90_A0A5M8BSA8	NA	NA
UHGV-2110462_4	eggNOG-mapper	257314.LJ_1456	NA	NA
UHGV-2110462_4	Pfam	PF05339	NA	DUF739
UHGV-2110462_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2110462_4	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-2110462_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2110462_5	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2110462_5	UniRef90	UniRef90_UPI001D060851	antA/AntB antirepressor family protein	NA
UHGV-2110462_5	eggNOG-mapper	552396.HMPREF0863_00756	P22_AR N-terminal domain	NA
UHGV-2110462_5	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2110462_5	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2110462_5	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-2110462_6	PHROG	phrog_989	NA	unknown function
UHGV-2110462_6	UniRef90	UniRef90_A0A1C7GA09	LysR family transcriptional regulator	NA
UHGV-2110462_6	eggNOG-mapper	927704.SELR_04450	NA	NA
UHGV-2110462_6	Structural annotation	PF11372	NA	NA
UHGV-2110462_7	PHROG	phrog_5765	NA	unknown function
UHGV-2110462_7	UniRef90	UniRef90_A0A416JYS5	BC1881 family protein	NA
UHGV-2110462_7	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-2110462_7	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-2110462_8	UniRef90	UniRef90_A0A1C7GBC3	DNA-binding protein	NA
UHGV-2110462_8	eggNOG-mapper	478749.BRYFOR_07577	Helix-turn-helix domain	NA
UHGV-2110462_8	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2110462_8	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2110462_8	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2110462_11	PHROG	phrog_34638	NA	unknown function
UHGV-2110462_13	PHROG	phrog_37022	NA	unknown function
UHGV-2110462_13	UniRef90	UniRef90_A0A174PPI7	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-2110462_13	eggNOG-mapper	1226322.HMPREF1545_03512	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-2110462_13	Structural annotation	PF01329, MF_00434, NF006158	NA	NA
UHGV-2110462_14	PHROG	phrog_22695	NA	unknown function
UHGV-2110462_14	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-2110462_15	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-2110462_15	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2110462_15	UniRef90	UniRef90_A0A7X2NL07	NA	NA
UHGV-2110462_15	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-2110462_15	Pfam	PF10926	NA	DUF2800
UHGV-2110462_15	COG	COG2887	RecB family exonuclease	NA
UHGV-2110462_15	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2110462_18	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2110462_18	UniRef90	UniRef90_A0A3E2VQQ5	NA	NA
UHGV-2110462_18	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-2110462_18	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2110462_18	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-2110462_19	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2110462_19	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2110462_19	UniRef90	UniRef90_R0BH17	POLAc domain-containing protein	NA
UHGV-2110462_19	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-2110462_19	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2110462_19	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2110462_19	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2110462_20	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2110462_20	UniRef90	UniRef90_A0A3E2VRI7	Virulence-associated protein E	NA
UHGV-2110462_20	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-2110462_20	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2110462_20	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2110462_20	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-2110462_22	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2110462_22	UniRef90	UniRef90_R0CM51	VRR-NUC domain-containing protein	NA
UHGV-2110462_22	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-2110462_22	Structural annotation	PF01870, MF_01490, NF002585, COG1591	NA	NA
UHGV-2110462_23	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2110462_23	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2110462_23	UniRef90	UniRef90_R0BUU1	Helicase ATP-binding domain-containing protein	NA
UHGV-2110462_23	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-2110462_23	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2110462_23	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2110462_23	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2110462_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2110462_23	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2110462_27	PHROG	phrog_1558	NA	unknown function
UHGV-2110462_27	UniRef90	UniRef90_UPI001D077CB1	helix-turn-helix domain-containing protein	NA
UHGV-2110462_27	eggNOG-mapper	1163671.JAGI01000002_gene3057	NA	NA
UHGV-2110462_27	Structural annotation	PF13613, MF_00245, NF008895, COG2739	NA	NA
UHGV-2110462_28	UniRef90	UniRef90_UPI001BBD7D65	TIGR04255 family protein	NA
UHGV-2110462_28	NCBIFam	TIGR04255.1	TIGR04255 family protein	NA
UHGV-2110462_28	Structural annotation	PF08680, MF_00408, TIGR04255, COG2101	NA	NA
UHGV-2110462_29	eggNOG-mapper	742726.HMPREF9448_02790	NA	NA
UHGV-2110462_30	Structural annotation	PF09274, NF008671, COG4710	NA	NA
UHGV-2110462_32	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2110462_32	UniRef90	UniRef90_A0A0E2HIV1	Phage terminase small subunit	NA
UHGV-2110462_32	eggNOG-mapper	411902.CLOBOL_00140	DNA packaging	NA
UHGV-2110462_32	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2110462_32	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2110462_32	COG	COG5484	NA	NA
UHGV-2110462_32	Structural annotation	NF040601, COG5484	NA	NA
UHGV-2110462_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2110462_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2110462_33	UniRef90	UniRef90_A0A413B195	PBSX family phage terminase large subunit	NA
UHGV-2110462_33	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-2110462_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-2110462_33	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2110462_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-2110462_34	UniRef90	UniRef90_UPI0011062C56	phage portal protein	NA
UHGV-2110462_34	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-2110462_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2110462_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2110462_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2110462_35	UniRef90	UniRef90_A0A1C7GBR4	Minor capsid protein	NA
UHGV-2110462_35	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-2110462_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2110462_35	COG	COG2369	NA	NA
UHGV-2110462_35	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-2110462_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2110462_36	UniRef90	UniRef90_C0CSR8	Phage minor structural protein GP20	NA
UHGV-2110462_36	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-2110462_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2110462_36	Structural annotation	PF06810	NA	NA
UHGV-2110462_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-2110462_37	UniRef90	UniRef90_UPI000E438149	phage major capsid protein	NA
UHGV-2110462_37	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-2110462_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2110462_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2110462_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2110462_37	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2110462_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2110462_38	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-2110462_39	PHROG	phrog_3366	NA	unknown function
UHGV-2110462_39	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-2110462_39	Pfam	PF20536	NA	DUF6751
UHGV-2110462_39	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2110462_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2110462_40	UniRef90	UniRef90_UPI00189CE0C6	minor capsid protein	NA
UHGV-2110462_40	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-2110462_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2110462_40	Structural annotation	PF11114	NA	NA
UHGV-2110462_41	PHROG	phrog_3266	tail completion	connector
UHGV-2110462_41	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-2110462_41	Structural annotation	PF20765	NA	NA
UHGV-2110462_42	PHROG	phrog_3099	NA	unknown function
UHGV-2110462_42	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-2110462_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2110462_43	PHROG	phrog_11299	NA	unknown function
UHGV-2110462_43	eggNOG-mapper	411902.CLOBOL_00128	NA	NA
UHGV-2110462_44	PHROG	phrog_706	NA	unknown function
UHGV-2110462_44	UniRef90	UniRef90_A0A0F0CE18	Bacteriophage Gp15 protein	NA
UHGV-2110462_44	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-2110462_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2110462_44	Structural annotation	PF06854	NA	NA
UHGV-2110462_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2110462_45	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-2110462_45	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-2110462_45	COG	COG5283	Phage-related tail protein	NA
UHGV-2110462_46	PHROG	phrog_1194	NA	unknown function
UHGV-2110462_46	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-2110462_46	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2110462_47	PHROG	phrog_13879	NA	unknown function
UHGV-2110462_47	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-2110462_47	Structural annotation	PF14594, PF21114, MF_00813, NF033848, TIGR02961, COG4379, COG4266	NA	NA
UHGV-2110462_48	PHROG	phrog_18725	NA	unknown function
UHGV-2110462_48	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-2110462_49	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-2110462_50	eggNOG-mapper	1304866.K413DRAFT_4766	NA	NA
UHGV-2110462_50	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-2110462_50	Structural annotation	PF21722, PF20942, TIGR04488, COG3401	NA	NA
UHGV-2110462_51	eggNOG-mapper	742733.HMPREF9469_00968	NA	NA
UHGV-2110462_53	PHROG	phrog_199	holin	lysis
UHGV-2110462_53	UniRef90	UniRef90_A0A174MPL2	Toxin secretion/phage lysis holin	NA
UHGV-2110462_53	eggNOG-mapper	1235793.C809_01935	Bacteriophage holin family	NA
UHGV-2110462_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2110462_53	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2110462_53	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2110462_53	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2110462_54	UniRef90	UniRef90_UPI001D068B5A	C40 family peptidase	NA
UHGV-2110462_54	eggNOG-mapper	411902.CLOBOL_00116	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-2110462_54	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2110462_54	Structural annotation	PF19127, PF00877, NF033742, COG0791	NA	NA
UHGV-2110462_55	UniRef90	UniRef90_A0A414DGQ6	NA	NA
UHGV-2110462_55	eggNOG-mapper	633697.EubceDRAFT1_2054	NA	NA
UHGV-2110462_55	Pfam	PF11536	NA	DUF3226
UHGV-2110462_56	KOfam	K06926	NA	NA
UHGV-2110462_56	PHROG	phrog_3940	NA	unknown function
UHGV-2110462_56	UniRef90	UniRef90_A0A1C7G3L8	ATPase_AAA_core domain-containing protein	NA
UHGV-2110462_56	eggNOG-mapper	33035.JPJF01000006_gene2078	AAA ATPase domain	NA
UHGV-2110462_56	PADLOC	AbiLi-2	AbiLi	Abi
UHGV-2110462_56	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-2110462_56	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-2110462_56	Structural annotation	PF13304, MF_00365, NF041760, COG4938	NA	NA
UHGV-2110462_57	UniRef90	UniRef90_A0A0U5QBA0	DDE_5 domain-containing protein	NA
UHGV-2110462_57	eggNOG-mapper	397290.C810_03023	transposition	NA
UHGV-2110462_57	Pfam	PF13546	DDE superfamily endonuclease	DDE_5
UHGV-2110462_57	NCBIFam	NF033540.1	IS701 family transposase	NA
UHGV-2110462_57	COG	COG5659	SRSO17 transposase	NA