UHGV-2110574

Genome information

vOTU vOTU-041918

Genome length 26,640 bps

CDS count 31

Completeness 66.14% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-2110574
vOTU ID	vOTU-041918
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029543\|Ga0244989_100465\|provirus_9118_35757
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.07
Jumbo phage	No

Genome content
Genome length	26,640 bps
GC content	40.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	97.15%
Average CDS length	838.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2110574_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2110574_1	PHROG	phrog_435	endolysin	lysis
UHGV-2110574_1	UniRef90	UniRef90_UPI000D659E9B	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2110574_1	eggNOG-mapper	1256908.HMPREF0373_00462	Cell wall hydrolase autolysin	NA
UHGV-2110574_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2110574_1	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-2110574_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2110574_1	Structural annotation	PF01520, PF19127, MF_00417, TIGR02883, TIGR04035, COG0860	NA	NA
UHGV-2110574_2	PHROG	phrog_199	holin	lysis
UHGV-2110574_2	UniRef90	UniRef90_A0A174GVG0	Phage-related holin (Lysis protein)	NA
UHGV-2110574_2	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-2110574_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2110574_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2110574_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2110574_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2110574_3	PHROG	phrog_134	NA	unknown function
UHGV-2110574_3	UniRef90	UniRef90_A0A373VIX2	XkdX family protein	NA
UHGV-2110574_3	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2110574_3	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-2110574_3	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2110574_5	PHROG	phrog_16164	NA	unknown function
UHGV-2110574_5	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA
UHGV-2110574_7	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-2110574_7	UniRef90	UniRef90_A0A1C6IW53	Phage minor structural protein, N-terminal region	NA
UHGV-2110574_7	eggNOG-mapper	556261.HMPREF0240_01281	cellulase activity	NA
UHGV-2110574_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2110574_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2110574_7	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2110574_8	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2110574_8	UniRef90	UniRef90_A0A2Y9BPR5	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-2110574_8	eggNOG-mapper	1235798.C817_03467	Phage tail protein	NA
UHGV-2110574_8	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2110574_8	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2110574_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-2110574_8	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-2110574_9	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-2110574_9	UniRef90	UniRef90_A0A7M2RG91	Tape measure protein	NA
UHGV-2110574_9	eggNOG-mapper	1235798.C817_03468	nuclear chromosome segregation	NA
UHGV-2110574_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2110574_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2110574_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2110574_9	Structural annotation	PF20155, PF06456, COG3941	NA	NA
UHGV-2110574_10	eggNOG-mapper	565664.EFXG_01175	NA	NA
UHGV-2110574_11	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2110574_11	UniRef90	UniRef90_A0A0K9N6E6	NA	NA
UHGV-2110574_11	eggNOG-mapper	1235798.C817_03470	Phage tail assembly chaperone protein, TAC	NA
UHGV-2110574_11	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2110574_11	Structural annotation	PF12363	NA	NA
UHGV-2110574_12	PHROG	phrog_238	major tail protein	tail
UHGV-2110574_12	UniRef90	UniRef90_R9N792	TP901-1 family phage major tail protein	NA
UHGV-2110574_12	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-2110574_12	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2110574_12	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2110574_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2110574_13	PHROG	phrog_176	tail terminator	connector
UHGV-2110574_13	UniRef90	UniRef90_UPI001D04E689	NA	NA
UHGV-2110574_13	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-2110574_13	Structural annotation	PF11367	NA	NA
UHGV-2110574_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2110574_14	UniRef90	UniRef90_UPI00195DCB77	HK97 gp10 family phage protein	NA
UHGV-2110574_14	eggNOG-mapper	1235798.C817_03473	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2110574_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2110574_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2110574_14	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2110574_15	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2110574_15	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-2110574_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2110574_16	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2110574_16	UniRef90	UniRef90_A0A174PRY0	Phage gp6-like head-tail connector protein	NA
UHGV-2110574_16	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-2110574_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2110574_16	Structural annotation	PF05135	NA	NA
UHGV-2110574_17	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-2110574_17	UniRef90	UniRef90_UPI001E5D2BBC	Rho termination protein	NA
UHGV-2110574_17	eggNOG-mapper	279808.SH2353	Rho termination factor, N-terminal domain	NA
UHGV-2110574_18	PHROG	phrog_544	major head protein	head and packaging
UHGV-2110574_18	UniRef90	UniRef90_A0A173ZE35	S-l_SbsC_C domain-containing protein	NA
UHGV-2110574_18	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-2110574_18	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2110574_18	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2110574_19	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2110574_19	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-2110574_19	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-2110574_19	Pfam	PF14265	NA	DUF4355
UHGV-2110574_19	Structural annotation	PF14265	NA	NA
UHGV-2110574_20	KOfam	K07584	NA	NA
UHGV-2110574_20	PHROG	phrog_4478	peptidase	other
UHGV-2110574_20	UniRef90	UniRef90_UPI000830E3BF	ribosomal-processing cysteine protease Prp	NA
UHGV-2110574_20	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-2110574_20	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2110574_20	COG	COG2868	NA	NA
UHGV-2110574_20	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2110574_21	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-2110574_24	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2110574_24	UniRef90	UniRef90_UPI00038D7E83	minor capsid protein	NA
UHGV-2110574_24	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-2110574_24	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2110574_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2110574_25	UniRef90	UniRef90_R5C1P6	Phage_Mu_F domain-containing protein	NA
UHGV-2110574_25	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2110574_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2110574_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2110574_25	COG	COG2369	NA	NA
UHGV-2110574_25	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-2110574_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-2110574_26	UniRef90	UniRef90_A0A373P643	Phage portal protein	NA
UHGV-2110574_26	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-2110574_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2110574_26	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2110574_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2110574_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2110574_27	PHROG	phrog_10250	NA	unknown function
UHGV-2110574_27	UniRef90	UniRef90_A0A373P5H0	PBSX family phage terminase large subunit	NA
UHGV-2110574_27	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-2110574_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2110574_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2110574_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2110574_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2110574_28	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2110574_28	UniRef90	UniRef90_R0CLX0	Phage terminase small subunit	NA
UHGV-2110574_28	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-2110574_28	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2110574_28	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2110574_28	COG	COG5484	NA	NA
UHGV-2110574_28	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-2110574_29	UniRef90	UniRef90_UPI00164A4990	restriction endonuclease	NA
UHGV-2110574_29	eggNOG-mapper	189425.PGRAT_23950	NA	NA
UHGV-2110574_29	Structural annotation	PF19363, PF04471, COG1787, COG3355	NA	NA
UHGV-2110574_31	UniRef90	UniRef90_A0A378NVC0	NA	NA
UHGV-2110574_31	eggNOG-mapper	1235793.C809_04286	NA	NA
UHGV-2110574_31	PADLOC	ThsA1_00005	Macro domain	Thoeris
UHGV-2110574_31	Pfam	PF20016	Thoeris protein ThsA, Macro domain	ThsA_Macro
UHGV-2110574_31	Structural annotation	PF20016, NF001662, COG2110	NA	NA