UHGV-2111430

Genome information

Genome length 24,542 bps

CDS count 41

Completeness 68.17% (medium-quality)

geNomad score 0.9269

Prediction confidence Confident

Genome information
Genome ID	UHGV-2111430
vOTU ID	vOTU-041800
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029578\|Ga0245007_100674\|provirus_11231_35772
BioSample	SAMEA3708851
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9269
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.14
Jumbo phage	No

Genome content
Genome length	24,542 bps
GC content	28.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	90.70%
Average CDS length	546.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2111430_1	KOfam	K14059	int; integrase	NA
UHGV-2111430_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2111430_1	UniRef90	UniRef90_UPI001D090FC7	site-specific integrase	NA
UHGV-2111430_1	eggNOG-mapper	1589749.A0A0B5A7B7_9CAUD	Phage integrase family	NA
UHGV-2111430_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2111430_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2111430_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2111430_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2111430_3	PHROG	phrog_1762	NA	unknown function
UHGV-2111430_3	UniRef90	UniRef90_A0A7Y4UKF8	NA	NA
UHGV-2111430_3	eggNOG-mapper	207954.MED92_10094	NA	NA
UHGV-2111430_3	Pfam	PF11185	NA	DUF2971
UHGV-2111430_4	PHROG	phrog_18347	NA	unknown function
UHGV-2111430_4	UniRef90	UniRef90_UPI001D064063	NA	NA
UHGV-2111430_4	eggNOG-mapper	1408254.T458_02640	Staphylococcal nuclease homologues	NA
UHGV-2111430_4	Pfam	PF14020	NA	DUF4236
UHGV-2111430_4	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-2111430_5	PHROG	phrog_5467	NA	unknown function
UHGV-2111430_5	UniRef90	UniRef90_E7GJU5	NA	NA
UHGV-2111430_5	eggNOG-mapper	742740.HMPREF9474_01188	NA	NA
UHGV-2111430_5	COG	COG5293	NA	NA
UHGV-2111430_5	Structural annotation	PF13166, MF_00449, TIGR03185, COG5293	NA	NA
UHGV-2111430_6	eggNOG-mapper	742766.HMPREF9455_00521	NA	NA
UHGV-2111430_6	Pfam	PF20293	ABC-three component (ABC-3C) system Middle Component 6	MC6
UHGV-2111430_7	eggNOG-mapper	742740.HMPREF9474_01190	NA	NA
UHGV-2111430_7	Pfam	PF20275	C-terminal domain 10 of the ABC-three component (ABC-3C) systems	CTD10
UHGV-2111430_9	UniRef90	UniRef90_A0A810PR37	Abi_C domain-containing protein	NA
UHGV-2111430_9	eggNOG-mapper	484770.UFO1_4626	Abortive infection C-terminus	NA
UHGV-2111430_9	PADLOC	AbiJ	AbiJ	Abi
UHGV-2111430_9	Pfam	PF14355	Abortive infection C-terminus	Abi_C
UHGV-2111430_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2111430_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2111430_10	UniRef90	UniRef90_UPI001D0627D7	helix-turn-helix transcriptional regulator	NA
UHGV-2111430_10	eggNOG-mapper	927704.SELR_11030	Helix-turn-helix XRE-family like proteins	NA
UHGV-2111430_10	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2111430_10	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2111430_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2111430_10	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2111430_11	UniRef90	UniRef90_UPI000687A369	helix-turn-helix domain-containing protein	NA
UHGV-2111430_11	eggNOG-mapper	272563.CD630_09071	sequence-specific DNA binding	NA
UHGV-2111430_11	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-2111430_11	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2111430_12	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2111430_12	UniRef90	UniRef90_UPI001D088355	helix-turn-helix transcriptional regulator	NA
UHGV-2111430_12	eggNOG-mapper	1203606.HMPREF1526_00992	Helix-turn-helix XRE-family like proteins	NA
UHGV-2111430_12	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2111430_12	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-2111430_14	Structural annotation	PF11614, NF041740, COG5066	NA	NA
UHGV-2111430_17	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2111430_17	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-2111430_17	UniRef90	UniRef90_UPI001D08DC67	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-2111430_17	eggNOG-mapper	632245.CLP_1613	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-2111430_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2111430_17	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2111430_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2111430_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2111430_17	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-2111430_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2111430_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2111430_18	UniRef90	UniRef90_UPI001D079CA7	replicative DNA helicase	NA
UHGV-2111430_18	eggNOG-mapper	1122217.KB899575_gene1971	Participates in initiation and elongation during chromosome replication	NA
UHGV-2111430_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2111430_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2111430_18	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-2111430_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-2111430_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2111430_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2111430_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2111430_24	UniRef90	UniRef90_UPI000E49F46F	single-stranded DNA-binding protein	NA
UHGV-2111430_24	eggNOG-mapper	1122217.KB899575_gene2011	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2111430_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2111430_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2111430_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2111430_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2111430_24	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2111430_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2111430_25	UniRef90	UniRef90_UPI00195CFC41	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2111430_25	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-2111430_25	Pfam	PF07374	NA	DUF1492
UHGV-2111430_25	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2111430_26	PHROG	phrog_14664	NA	unknown function
UHGV-2111430_26	eggNOG-mapper	485916.Dtox_0013	NA	NA
UHGV-2111430_26	Structural annotation	PF00644, COG5654	NA	NA
UHGV-2111430_28	PHROG	phrog_21664	NA	unknown function
UHGV-2111430_28	UniRef90	UniRef90_UPI000C7851F2	protein-export chaperone SecB	NA
UHGV-2111430_28	eggNOG-mapper	796940.HMPREF9628_01214	Preprotein translocase subunit SecB	NA
UHGV-2111430_28	Structural annotation	PF02556, MF_00821, NF004391, COG1952	NA	NA
UHGV-2111430_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2111430_31	Structural annotation	PF11570, NF038178, COG1842	NA	NA
UHGV-2111430_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2111430_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2111430_32	UniRef90	UniRef90_UPI001D09358B	HNH endonuclease	NA
UHGV-2111430_32	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-2111430_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2111430_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2111430_33	PHROG	phrog_1066	NA	unknown function
UHGV-2111430_33	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-2111430_33	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2111430_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2111430_34	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-2111430_34	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-2111430_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2111430_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2111430_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2111430_34	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2111430_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-2111430_35	UniRef90	UniRef90_UPI00142FCB51	phage portal protein	NA
UHGV-2111430_35	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-2111430_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2111430_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2111430_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2111430_36	KOfam	K06904	NA	NA
UHGV-2111430_36	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2111430_36	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-2111430_36	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-2111430_36	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2111430_36	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2111430_36	COG	COG3740	Phage head maturation protease	NA
UHGV-2111430_36	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2111430_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-2111430_37	UniRef90	UniRef90_A0A412CI12	Phage major capsid protein	NA
UHGV-2111430_37	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-2111430_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2111430_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2111430_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2111430_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2111430_38	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-2111430_38	PHROG	phrog_5073	tail fiber protein	tail
UHGV-2111430_38	UniRef90	UniRef90_A0A412CHG4	Collagen-like protein	NA
UHGV-2111430_38	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2111430_39	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2111430_39	UniRef90	UniRef90_A0A412CHC9	Phage gp6-like head-tail connector protein	NA
UHGV-2111430_39	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-2111430_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2111430_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2111430_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2111430_40	PHROG	phrog_25	head closure Hc1	connector
UHGV-2111430_40	UniRef90	UniRef90_A0A412CHY1	Head-tail adaptor protein	NA
UHGV-2111430_40	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-2111430_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2111430_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2111430_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2111430_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2111430_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2111430_41	UniRef90	UniRef90_A0A412CI38	HK97 gp10 family phage protein	NA
UHGV-2111430_41	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2111430_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like