UHGV-2111874

Genome information

Genome length 69,549 bps

CDS count 97

Completeness 84.49% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-2111874
vOTU ID	vOTU-021655
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029567\|Ga0244886_100233
BioSample	SAMEA3708730
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.86
Jumbo phage	No

Genome content
Genome length	69,549 bps
GC content	47.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	97
CDS density	90.86%
Average CDS length	652.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2111874_2	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2111874_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2111874_2	UniRef90	UniRef90_UPI001C2B9299	tyrosine-type recombinase/integrase	NA
UHGV-2111874_2	eggNOG-mapper	1236504.HMPREF2132_10995	Belongs to the 'phage' integrase family	NA
UHGV-2111874_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2111874_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2111874_2	Structural annotation	PF00589, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-2111874_3	Structural annotation	PF16103, TIGR03066	NA	NA
UHGV-2111874_8	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2111874_8	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2111874_8	UniRef90	UniRef90_UPI001C2B9107	RNA-directed DNA polymerase	NA
UHGV-2111874_8	eggNOG-mapper	445970.ALIPUT_02574	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2111874_8	PADLOC	drt-UG27	DRT	DRT
UHGV-2111874_8	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2111874_8	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2111874_8	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-2111874_9	UniRef90	UniRef90_UPI001C2C02C1	ubiquitin carboxyl-hydrolase	NA
UHGV-2111874_9	eggNOG-mapper	547042.BACCOPRO_02126	NA	NA
UHGV-2111874_9	PADLOC	drt-cluster337	DRT	DRT
UHGV-2111874_10	eggNOG-mapper	445970.ALIPUT_02571	NA	NA
UHGV-2111874_10	PADLOC	drt-cluster346	DRT	DRT
UHGV-2111874_15	UniRef90	UniRef90_UPI001C3951D3	DpnD/PcfM family protein	NA
UHGV-2111874_15	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-2111874_15	Structural annotation	PF14207	NA	NA
UHGV-2111874_23	eggNOG-mapper	1515615.HQ41_08200	COG NOG33922 non supervised orthologous group	NA
UHGV-2111874_25	PHROG	phrog_11100	NA	unknown function
UHGV-2111874_40	PHROG	phrog_1485	NA	unknown function
UHGV-2111874_40	UniRef90	UniRef90_UPI001C2C3223	nucleotide modification associated domain-containing protein	NA
UHGV-2111874_40	eggNOG-mapper	240302.BN982_00203	NA	NA
UHGV-2111874_40	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-2111874_40	Structural annotation	PF07659	NA	NA
UHGV-2111874_41	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2111874_41	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2111874_41	UniRef90	UniRef90_UPI001C2C6E49	phage antirepressor KilAC domain-containing protein	NA
UHGV-2111874_41	eggNOG-mapper	1105171.H2A0H2_9CAUD	DNA binding	NA
UHGV-2111874_41	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2111874_41	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2111874_41	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2111874_41	Structural annotation	PF03374, PF09669, TIGR02681, COG3645	NA	NA
UHGV-2111874_42	PHROG	phrog_799	DNA methyltransferase	other
UHGV-2111874_42	UniRef90	UniRef90_A0A413BQE0	NAD(P)-dependent oxidoreductase	NA
UHGV-2111874_42	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-2111874_42	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-2111874_42	Structural annotation	PF03848, MF_00341, NF012219, COG1255	NA	NA
UHGV-2111874_52	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2111874_52	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2111874_52	UniRef90	UniRef90_A0A646FRN8	dUTPase domain-containing protein	NA
UHGV-2111874_52	eggNOG-mapper	592026.GCWU0000282_002542	NA	NA
UHGV-2111874_52	Pfam	PF00692	dUTPase	dUTPase
UHGV-2111874_52	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2111874_52	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-2111874_53	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2111874_53	UniRef90	UniRef90_A0A1L8CM45	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-2111874_53	eggNOG-mapper	153496.JNAB01000022_gene2638	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-2111874_53	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-2111874_53	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-2111874_55	PHROG	phrog_10156	NA	unknown function
UHGV-2111874_55	eggNOG-mapper	742727.HMPREF9447_04840	NA	NA
UHGV-2111874_56	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2111874_56	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2111874_56	UniRef90	UniRef90_UPI001C2C5599	NA	NA
UHGV-2111874_56	eggNOG-mapper	1236504.HMPREF2132_11050	Phage plasmid primase, P4 family domain protein	NA
UHGV-2111874_56	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2111874_56	Pfam	PF19263	NA	DUF5906
UHGV-2111874_56	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2111874_56	Structural annotation	PF04735, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-2111874_59	eggNOG-mapper	1236504.HMPREF2132_11155	NA	NA
UHGV-2111874_59	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-2111874_60	PHROG	phrog_64	portal protein	head and packaging
UHGV-2111874_60	UniRef90	UniRef90_UPI001C2C654D	phage portal protein	NA
UHGV-2111874_60	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2111874_61	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2111874_61	UniRef90	UniRef90_A0A3R5XWW2	HintN domain-containing protein	NA
UHGV-2111874_61	eggNOG-mapper	1236504.HMPREF2132_11175	Terminase-like family	NA
UHGV-2111874_61	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2111874_61	COG	COG5362	Phage terminase large subunit	NA
UHGV-2111874_61	Structural annotation	PF04466, PF05203, PF20441, MF_04146, TIGR01547, NF005852, COG4373, COG1372	NA	NA
UHGV-2111874_63	Structural annotation	PF21430	NA	NA
UHGV-2111874_64	PHROG	phrog_29	major head protein	head and packaging
UHGV-2111874_64	UniRef90	UniRef90_A0A8B2AWS5	Major capsid protein	NA
UHGV-2111874_64	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-2111874_65	eggNOG-mapper	1236504.HMPREF2132_11200	NA	NA
UHGV-2111874_65	Structural annotation	PF20449	NA	NA
UHGV-2111874_66	Structural annotation	PF13437	NA	NA
UHGV-2111874_67	PHROG	phrog_5377	NA	unknown function
UHGV-2111874_68	Structural annotation	PF06141	NA	NA
UHGV-2111874_69	Structural annotation	PF08813, TIGR01603, COG5437	NA	NA
UHGV-2111874_70	eggNOG-mapper	1236504.HMPREF2132_11225	NA	NA
UHGV-2111874_71	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-2111874_71	UniRef90	UniRef90_UPI00056108A0	glycine zipper domain-containing protein	NA
UHGV-2111874_71	eggNOG-mapper	742727.HMPREF9447_04839	tape measure	NA
UHGV-2111874_71	COG	COG1511	NA	NA
UHGV-2111874_72	eggNOG-mapper	1236504.HMPREF2132_11265	NA	NA
UHGV-2111874_72	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2111874_73	PHROG	phrog_38044	NA	unknown function
UHGV-2111874_73	eggNOG-mapper	1121100.JCM6294_565	Phage minor structural protein	NA
UHGV-2111874_73	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-2111874_73	COG	COG4926	Phage-related protein	NA
UHGV-2111874_73	Structural annotation	PF21466, PF20073, PF14594, NF033675	NA	NA
UHGV-2111874_74	PHROG	phrog_17134	NA	unknown function
UHGV-2111874_74	Structural annotation	PF12866, PF13620, PF20942, NF040788, COG2351	NA	NA
UHGV-2111874_75	UniRef90	UniRef90_UPI001F36DCAA	NA	NA
UHGV-2111874_75	eggNOG-mapper	1122985.HMPREF1991_01560	NA	NA
UHGV-2111874_75	Pfam	PF14301	NA	DUF4376
UHGV-2111874_75	Structural annotation	PF14301	NA	NA
UHGV-2111874_76	UniRef90	UniRef90_F3PDX9	Conserved domain protein	NA
UHGV-2111874_76	eggNOG-mapper	411479.BACUNI_00732	NA	NA
UHGV-2111874_77	PHROG	phrog_1501	NA	unknown function
UHGV-2111874_77	UniRef90	UniRef90_R6EVM2	NA	NA
UHGV-2111874_77	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-2111874_77	Pfam	PF18925	NA	DUF5675
UHGV-2111874_77	Structural annotation	PF18925	NA	NA
UHGV-2111874_78	eggNOG-mapper	449673.BACSTE_00852	NA	NA
UHGV-2111874_79	eggNOG-mapper	762982.HMPREF9442_01199	NA	NA
UHGV-2111874_80	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2111874_81	PHROG	phrog_16490	NA	unknown function
UHGV-2111874_81	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-2111874_81	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-2111874_82	PHROG	phrog_31654	NA	unknown function
UHGV-2111874_82	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-2111874_83	PHROG	phrog_28898	NA	unknown function
UHGV-2111874_83	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-2111874_83	Structural annotation	PF10781	NA	NA
UHGV-2111874_85	PHROG	phrog_38431	NA	unknown function
UHGV-2111874_85	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-2111874_85	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-2111874_86	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-2111874_88	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2111874_88	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2111874_88	UniRef90	UniRef90_A0A7H1MQA2	MBL fold metallo-hydrolase	NA
UHGV-2111874_88	eggNOG-mapper	86416.Clopa_2515	Metallo-beta-lactamase superfamily	NA
UHGV-2111874_88	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2111874_88	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2111874_88	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2111874_89	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2111874_89	UniRef90	UniRef90_UPI001D032ADE	recombinase RecT	NA
UHGV-2111874_89	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-2111874_89	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2111874_90	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2111874_90	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2111874_90	UniRef90	UniRef90_A0A415VGU6	AAA_23 domain-containing protein	NA
UHGV-2111874_90	eggNOG-mapper	1121285.AUFK01000002_gene9	nuclear chromosome segregation	NA
UHGV-2111874_90	Pfam	PF13476	AAA domain	AAA_23
UHGV-2111874_90	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2111874_90	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2111874_91	Structural annotation	PF20338	NA	NA
UHGV-2111874_92	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2111874_93	UniRef90	UniRef90_A0A7H1MQ97	Helix-turn-helix domain-containing protein	NA
UHGV-2111874_93	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2111874_93	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-2111874_95	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2111874_95	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2111874_95	UniRef90	UniRef90_A0A7H1MQ96	Helix-turn-helix transcriptional regulator	NA
UHGV-2111874_95	eggNOG-mapper	1122985.HMPREF1991_02233	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2111874_95	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2111874_95	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2111874_95	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2111874_96	KOfam	K01933	purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]	NA
UHGV-2111874_96	PHROG	phrog_1207	phosphoribosylaminoimidazole synthetase	moron, auxiliary metabolic gene and host takeover
UHGV-2111874_96	UniRef90	UniRef90_G6AYP8	Phosphoribosylformylglycinamidine cyclo-ligase	NA
UHGV-2111874_96	eggNOG-mapper	1002367.HMPREF0673_01758	Phosphoribosylformylglycinamidine cyclo-ligase	NA
UHGV-2111874_96	Pfam	PF00586	AIR synthase related protein, N-terminal domain	AIRS
UHGV-2111874_96	Pfam	PF02769	AIR synthase related protein, C-terminal domain	AIRS_C
UHGV-2111874_96	COG	COG0150	Phosphoribosylaminoimidazole (AIR) synthetase	NA
UHGV-2111874_97	KOfam	K02835	prfA, MTRF1, MRF1; peptide chain release factor 1	NA
UHGV-2111874_97	PHROG	phrog_19918	NA	unknown function
UHGV-2111874_97	UniRef90	UniRef90_G6AYQ0	Peptide chain release factor 1	NA
UHGV-2111874_97	eggNOG-mapper	1002367.HMPREF0673_01760	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA	NA
UHGV-2111874_97	Pfam	PF03462	PCRF domain	PCRF
UHGV-2111874_97	Pfam	PF00472	RF-1 domain	RF-1
UHGV-2111874_97	NCBIFam	NF001859.2	peptide chain release factor 1	NA
UHGV-2111874_97	COG	COG0216	Protein chain release factor RF1	NA
UHGV-2111874_97	HAMAP	MF_00093	Peptide chain release factor 1 [prfA]	NA