UHGV-2112520

Genome information

Genome length 34,437 bps

CDS count 46

Completeness 98.13% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-2112520
vOTU ID	vOTU-073007
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029541\|Ga0244914_100012\|provirus_33346_70955
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.98
Jumbo phage	No

Genome content
Genome length	34,437 bps
GC content	44.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.90%
Average CDS length	706.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2112520_1	KOfam	K14059	int; integrase	NA
UHGV-2112520_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2112520_1	UniRef90	UniRef90_A0A373VP80	Tyr recombinase domain-containing protein	NA
UHGV-2112520_1	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-2112520_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2112520_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2112520_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2112520_2	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-2112520_2	PHROG	phrog_19856	NA	unknown function
UHGV-2112520_2	UniRef90	UniRef90_A0A356CZV8	Mrr_cat domain-containing protein	NA
UHGV-2112520_2	eggNOG-mapper	697329.Rumal_1169	Restriction endonuclease	NA
UHGV-2112520_2	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2112520_2	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-2112520_2	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-2112520_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2112520_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2112520_3	UniRef90	UniRef90_A0A373VMR3	Repressor LexA	NA
UHGV-2112520_3	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-2112520_3	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2112520_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2112520_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2112520_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2112520_4	UniRef90	UniRef90_A0A373VPI4	HTH cro/C1-type domain-containing protein	NA
UHGV-2112520_4	eggNOG-mapper	1292035.H476_1036	NA	NA
UHGV-2112520_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-2112520_5	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2112520_5	UniRef90	UniRef90_A0A373SN33	NA	NA
UHGV-2112520_5	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-2112520_5	Structural annotation	COG2250	NA	NA
UHGV-2112520_7	Structural annotation	PF16857, MF_00273, NF001981	NA	NA
UHGV-2112520_11	PHROG	phrog_22543	NA	unknown function
UHGV-2112520_11	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-2112520_12	PHROG	phrog_38338	NA	unknown function
UHGV-2112520_12	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2112520_12	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-2112520_13	PHROG	phrog_8470	NA	unknown function
UHGV-2112520_13	UniRef90	UniRef90_UPI0019175B9C	PcfJ domain-containing protein	NA
UHGV-2112520_13	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-2112520_13	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2112520_13	Structural annotation	PF14284	NA	NA
UHGV-2112520_14	PHROG	phrog_15609	NA	unknown function
UHGV-2112520_14	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-2112520_14	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2112520_14	Pfam	PF11300	NA	DUF3102
UHGV-2112520_14	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2112520_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2112520_15	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-2112520_15	eggNOG-mapper	881621.LIV_2167	Siphovirus Gp157	NA
UHGV-2112520_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2112520_15	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2112520_16	PHROG	phrog_1366	NA	unknown function
UHGV-2112520_16	UniRef90	UniRef90_R6S946	AAA domain-containing protein	NA
UHGV-2112520_16	eggNOG-mapper	1410670.JHXF01000015_gene2269	AAA domain	NA
UHGV-2112520_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-2112520_16	COG	COG0468	RecA/RadA recombinase	NA
UHGV-2112520_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2112520_17	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2112520_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2112520_17	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-2112520_17	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2112520_17	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2112520_17	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2112520_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2112520_17	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2112520_17	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2112520_18	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2112520_18	UniRef90	UniRef90_A0A373SNE0	VRR-NUC domain-containing protein	NA
UHGV-2112520_18	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-2112520_18	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2112520_18	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-2112520_19	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2112520_19	UniRef90	UniRef90_A0A373SL44	NA	NA
UHGV-2112520_19	eggNOG-mapper	1423807.BACO01000050_gene1454	NA	NA
UHGV-2112520_19	Pfam	PF05037	NA	DUF669
UHGV-2112520_19	Structural annotation	PF05037, NF004948	NA	NA
UHGV-2112520_20	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2112520_20	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2112520_20	UniRef90	UniRef90_A0A356CZ91	DNA primase	NA
UHGV-2112520_20	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-2112520_20	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2112520_20	Pfam	PF19263	NA	DUF5906
UHGV-2112520_20	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2112520_20	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2112520_20	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2112520_20	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-2112520_22	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2112520_23	eggNOG-mapper	515620.EUBELI_20304	NA	NA
UHGV-2112520_23	Structural annotation	MF_00637, TIGR01925, COG2172	NA	NA
UHGV-2112520_24	UniRef90	UniRef90_C4Z656	NA	NA
UHGV-2112520_24	Structural annotation	PF14213	NA	NA
UHGV-2112520_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2112520_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2112520_26	UniRef90	UniRef90_A0A374HNN6	Terminase small subunit	NA
UHGV-2112520_26	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-2112520_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2112520_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2112520_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2112520_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2112520_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2112520_27	UniRef90	UniRef90_A0A373XSH6	Terminase	NA
UHGV-2112520_27	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-2112520_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2112520_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2112520_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2112520_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-2112520_28	UniRef90	UniRef90_A0A374HLV7	Phage portal protein	NA
UHGV-2112520_28	eggNOG-mapper	717606.PaecuDRAFT_3119	NA	NA
UHGV-2112520_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2112520_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2112520_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2112520_29	UniRef90	UniRef90_UPI000A270255	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2112520_29	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-2112520_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2112520_29	COG	COG2369	NA	NA
UHGV-2112520_29	Structural annotation	PF06152, PF21814	NA	NA
UHGV-2112520_30	Structural annotation	PF06442, MF_01194, NF000331, COG5475	NA	NA
UHGV-2112520_32	PHROG	phrog_422	major head protein	head and packaging
UHGV-2112520_32	UniRef90	UniRef90_A0A1Y4R5U9	Phage capsid protein	NA
UHGV-2112520_32	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-2112520_32	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2112520_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2112520_33	eggNOG-mapper	1507.HMPREF0262_01180	NA	NA
UHGV-2112520_34	PHROG	phrog_8710	NA	unknown function
UHGV-2112520_34	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-2112520_34	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2112520_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2112520_35	eggNOG-mapper	1507.HMPREF0262_01182	NA	NA
UHGV-2112520_36	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2112520_36	UniRef90	UniRef90_UPI001BEB3BC5	minor capsid protein	NA
UHGV-2112520_36	eggNOG-mapper	1507.HMPREF0262_01183	NA	NA
UHGV-2112520_36	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2112520_36	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2112520_37	PHROG	phrog_820	major tail protein	tail
UHGV-2112520_37	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-2112520_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2112520_38	PHROG	phrog_8300	NA	unknown function
UHGV-2112520_38	eggNOG-mapper	1507.HMPREF0262_00213	NA	NA
UHGV-2112520_39	PHROG	phrog_8355	NA	unknown function
UHGV-2112520_39	UniRef90	UniRef90_A0A1C6EB03	Bacteriophage Gp15 protein	NA
UHGV-2112520_39	eggNOG-mapper	1232449.BAHV02000018_gene1518	Bacteriophage Gp15 protein	NA
UHGV-2112520_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2112520_40	UniRef90	UniRef90_A0A1C6JAZ8	Phage-related protein	NA
UHGV-2112520_40	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-2112520_40	COG	COG5283	Phage-related tail protein	NA
UHGV-2112520_42	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-2112520_42	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-2112520_42	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2112520_44	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-2112520_44	Structural annotation	PF20942	NA	NA
UHGV-2112520_46	PHROG	phrog_134	NA	unknown function
UHGV-2112520_46	UniRef90	UniRef90_A0A374ERE4	XkdX family protein	NA
UHGV-2112520_46	eggNOG-mapper	478749.BRYFOR_07560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2112520_46	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2112520_46	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-2112520_46	Structural annotation	PF09693, TIGR01669	NA	NA