UHGV-2112675

Genome information

Genome length 33,587 bps

CDS count 48

Completeness 96.09% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-2112675
vOTU ID	vOTU-009353
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029564\|Ga0244919_101025
BioSample	SAMEA3708763
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.31
Jumbo phage	No

Genome content
Genome length	33,587 bps
GC content	60.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.86%
Average CDS length	653.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2112675_2	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2112675_2	UniRef90	UniRef90_A0A8J6MF41	Helix-turn-helix domain-containing protein	NA
UHGV-2112675_2	eggNOG-mapper	1226322.HMPREF1545_00094	DnaD domain protein	NA
UHGV-2112675_2	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2112675_2	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2112675_2	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-2112675_3	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2112675_3	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2112675_3	UniRef90	UniRef90_A0A1Y3RP11	DNA helicase	NA
UHGV-2112675_3	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-2112675_3	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2112675_3	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2112675_3	COG	COG0305	Replicative DNA helicase	NA
UHGV-2112675_3	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-2112675_4	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2112675_4	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2112675_4	UniRef90	UniRef90_UPI001F3C1DB2	ParA family protein	NA
UHGV-2112675_4	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-2112675_4	Pfam	PF13614	AAA domain	AAA_31
UHGV-2112675_4	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2112675_4	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2112675_5	PHROG	phrog_15609	NA	unknown function
UHGV-2112675_5	UniRef90	UniRef90_UPI001246A313	NA	NA
UHGV-2112675_5	eggNOG-mapper	1226322.HMPREF1545_00098	NA	NA
UHGV-2112675_5	Pfam	PF11300	NA	DUF3102
UHGV-2112675_5	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-2112675_5	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-2112675_6	PHROG	phrog_38338	NA	unknown function
UHGV-2112675_6	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-2112675_7	PHROG	phrog_8470	NA	unknown function
UHGV-2112675_7	UniRef90	UniRef90_UPI0018A02262	PcfJ domain-containing protein	NA
UHGV-2112675_7	eggNOG-mapper	693746.OBV_24010	PcfJ-like protein	NA
UHGV-2112675_7	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2112675_7	Structural annotation	PF14284	NA	NA
UHGV-2112675_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2112675_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2112675_9	UniRef90	UniRef90_UPI0012489F18	single-stranded DNA-binding protein	NA
UHGV-2112675_9	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-2112675_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2112675_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2112675_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2112675_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2112675_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2112675_11	PHROG	phrog_2717	NA	unknown function
UHGV-2112675_11	eggNOG-mapper	552398.HMPREF0866_02231	NA	NA
UHGV-2112675_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2112675_14	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-2112675_14	Structural annotation	PF01446, NF041486	NA	NA
UHGV-2112675_15	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-2112675_15	Structural annotation	PF14205	NA	NA
UHGV-2112675_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2112675_16	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-2112675_16	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-2112675_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2112675_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2112675_17	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-2112675_17	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-2112675_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2112675_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2112675_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2112675_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2112675_17	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-2112675_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-2112675_18	UniRef90	UniRef90_A0A3D1VH02	Phage portal protein	NA
UHGV-2112675_18	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-2112675_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2112675_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2112675_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2112675_18	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2112675_19	KOfam	K06904	NA	NA
UHGV-2112675_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2112675_19	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-2112675_19	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-2112675_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2112675_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2112675_19	COG	COG3740	Phage head maturation protease	NA
UHGV-2112675_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2112675_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-2112675_20	UniRef90	UniRef90_A0A2N1PHH4	Phage major capsid protein	NA
UHGV-2112675_20	eggNOG-mapper	913865.DOT_5633	phage major capsid protein, HK97 family	NA
UHGV-2112675_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2112675_20	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2112675_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2112675_20	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-2112675_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2112675_21	PHROG	phrog_2550	NA	unknown function
UHGV-2112675_21	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-2112675_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2112675_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2112675_22	UniRef90	UniRef90_B7GIN3	Prophage pi2 protein	NA
UHGV-2112675_22	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-2112675_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2112675_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2112675_23	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-2112675_23	Structural annotation	PF05657	NA	NA
UHGV-2112675_24	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-2112675_24	Structural annotation	TIGR01725	NA	NA
UHGV-2112675_25	PHROG	phrog_88	major tail protein	tail
UHGV-2112675_25	eggNOG-mapper	1235793.C809_01925	phage major tail protein, phi13 family	NA
UHGV-2112675_25	COG	COG5492	NA	NA
UHGV-2112675_25	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2112675_26	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-2112675_27	PHROG	phrog_23464	NA	unknown function
UHGV-2112675_27	UniRef90	UniRef90_A0A231NVG0	Phage tail protein	NA
UHGV-2112675_27	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-2112675_27	COG	COG5412	Phage-related protein	NA
UHGV-2112675_27	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-2112675_28	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-2112675_28	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2112675_29	PHROG	phrog_13879	NA	unknown function
UHGV-2112675_29	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-2112675_29	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-2112675_30	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-2112675_30	Structural annotation	PF00354	NA	NA
UHGV-2112675_33	UniRef90	UniRef90_A0A8J6JAX9	XkdX family protein	NA
UHGV-2112675_33	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2112675_34	PHROG	phrog_37604	NA	unknown function
UHGV-2112675_34	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-2112675_35	PHROG	phrog_13256	NA	unknown function
UHGV-2112675_35	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-2112675_37	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2112675_37	PHROG	phrog_435	endolysin	lysis
UHGV-2112675_37	UniRef90	UniRef90_A0A1G8HCT6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2112675_37	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-2112675_37	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2112675_37	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-2112675_37	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2112675_37	Structural annotation	PF01520, PF09992, PF01471, MF_00562, TIGR02883, COG0860, COG4632, COG3409	NA	NA
UHGV-2112675_40	UniRef90	UniRef90_UPI000B9A8013	helix-turn-helix domain-containing protein	NA
UHGV-2112675_40	eggNOG-mapper	1291050.JAGE01000002_gene3398	NA	NA
UHGV-2112675_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2112675_40	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-2112675_41	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2112675_41	PHROG	phrog_95	integrase	integration and excision
UHGV-2112675_41	UniRef90	UniRef90_UPI001F38D8FE	recombinase family protein	NA
UHGV-2112675_41	eggNOG-mapper	1121344.JHZO01000003_gene691	resolvase	NA
UHGV-2112675_41	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2112675_41	Pfam	PF07508	Recombinase	Recombinase
UHGV-2112675_41	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2112675_41	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2112675_42	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-2112675_42	UniRef90	UniRef90_C8VWN5	Copper amine oxidase domain protein	NA
UHGV-2112675_42	eggNOG-mapper	1304284.L21TH_0821	Glycosyl hydrolases family 18	NA
UHGV-2112675_42	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-2112675_42	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-2112675_42	COG	COG1555	DNA uptake protein ComE or related DNA-binding protein	NA
UHGV-2112675_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2112675_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2112675_43	UniRef90	UniRef90_UPI00195B9F39	helix-turn-helix domain-containing protein	NA
UHGV-2112675_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2112675_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2112675_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2112675_44	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-2112675_44	UniRef90	UniRef90_UPI00195EE0B8	helix-turn-helix domain-containing protein	NA
UHGV-2112675_44	eggNOG-mapper	1408321.JNJD01000008_gene1929	Helix-turn-helix XRE-family like proteins	NA
UHGV-2112675_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2112675_44	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-2112675_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2112675_45	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2112675_45	UniRef90	UniRef90_A0A1Y4C5B6	HTH cro/C1-type domain-containing protein	NA
UHGV-2112675_45	eggNOG-mapper	742738.HMPREF9460_04043	Helix-turn-helix XRE-family like proteins	NA
UHGV-2112675_45	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2112675_45	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2112675_45	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA