UHGV-2112964

Genome information

Genome length 37,144 bps

CDS count 54

Completeness 99.39% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-2112964
vOTU ID	vOTU-009433
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029554\|Ga0245041_100062\|provirus_8081_45224
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.39% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.58
Jumbo phage	No

Genome content
Genome length	37,144 bps
GC content	45.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	96.44%
Average CDS length	671.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2112964_1	KOfam	K14059	int; integrase	NA
UHGV-2112964_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2112964_1	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-2112964_1	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-2112964_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2112964_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2112964_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2112964_2	PHROG	phrog_1914	NA	unknown function
UHGV-2112964_2	UniRef90	UniRef90_B0MKY6	Putative toxin-antitoxin system, toxin component	NA
UHGV-2112964_2	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2112964_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2112964_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2112964_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2112964_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2112964_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2112964_3	UniRef90	UniRef90_B0MKY5	DNA-binding helix-turn-helix protein	NA
UHGV-2112964_3	eggNOG-mapper	697303.Thewi_2448	Helix-turn-helix XRE-family like proteins	NA
UHGV-2112964_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2112964_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2112964_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2112964_4	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-2112964_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2112964_6	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-2112964_6	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-2112964_9	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2112964_10	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2112964_10	PHROG	phrog_21201	DNA methyltransferase	other
UHGV-2112964_10	UniRef90	UniRef90_A0A1C6BWK1	Modification methylase VspI	NA
UHGV-2112964_10	eggNOG-mapper	742738.HMPREF9460_01134	Type II restriction enzyme, methylase subunits	NA
UHGV-2112964_10	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2112964_10	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-2112964_10	Structural annotation	PF20473, MF_02217, NF001556, COG0742	NA	NA
UHGV-2112964_11	Structural annotation	PF04218, NF040595, COG3415	NA	NA
UHGV-2112964_12	PHROG	phrog_27517	NA	unknown function
UHGV-2112964_13	PHROG	phrog_38338	NA	unknown function
UHGV-2112964_13	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2112964_13	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-2112964_14	PHROG	phrog_8470	NA	unknown function
UHGV-2112964_14	UniRef90	UniRef90_A0A315Y141	PcfJ-like protein	NA
UHGV-2112964_14	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-2112964_14	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2112964_14	Structural annotation	PF14284	NA	NA
UHGV-2112964_15	PHROG	phrog_15609	NA	unknown function
UHGV-2112964_15	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-2112964_15	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2112964_15	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2112964_16	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2112964_16	UniRef90	UniRef90_C7GC36	Siphovirus Gp157	NA
UHGV-2112964_16	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-2112964_16	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2112964_16	Structural annotation	PF05565	NA	NA
UHGV-2112964_17	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2112964_17	UniRef90	UniRef90_A0A6P1TM46	AAA family ATPase	NA
UHGV-2112964_17	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-2112964_17	Pfam	PF13479	AAA domain	AAA_24
UHGV-2112964_17	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2112964_18	PHROG	phrog_18107	NA	unknown function
UHGV-2112964_18	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-2112964_18	eggNOG-mapper	536233.CLO_1545	NA	NA
UHGV-2112964_18	Structural annotation	PF05037	NA	NA
UHGV-2112964_19	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2112964_19	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-2112964_19	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-2112964_19	Pfam	PF06048	NA	DUF927
UHGV-2112964_19	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2112964_19	COG	COG5519	NA	NA
UHGV-2112964_19	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-2112964_20	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2112964_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2112964_20	UniRef90	UniRef90_UPI000CF3D2DC	helix-turn-helix domain-containing protein	NA
UHGV-2112964_20	eggNOG-mapper	1507.HMPREF0262_02570	sequence-specific DNA binding	NA
UHGV-2112964_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2112964_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2112964_21	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2112964_21	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2112964_21	UniRef90	UniRef90_A0A6N8HZM3	Putative DNA repair helicase RadD	NA
UHGV-2112964_21	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2112964_21	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2112964_21	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2112964_21	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2112964_21	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2112964_21	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2112964_22	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2112964_22	UniRef90	UniRef90_A0A150BAU8	VRR-NUC domain-containing protein	NA
UHGV-2112964_22	eggNOG-mapper	1347392.CCEZ01000005_gene1219	VRR_NUC	NA
UHGV-2112964_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2112964_22	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-2112964_24	PHROG	phrog_236	nucleotide kinase	other
UHGV-2112964_24	UniRef90	UniRef90_UPI000AC4FB2A	NA	NA
UHGV-2112964_24	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-2112964_24	Pfam	PF11753	NA	DUF3310
UHGV-2112964_26	PHROG	phrog_23660	NA	unknown function
UHGV-2112964_26	eggNOG-mapper	1226322.HMPREF1545_03534	NA	NA
UHGV-2112964_27	PHROG	phrog_8684	NA	unknown function
UHGV-2112964_27	UniRef90	UniRef90_K1RNE6	Protein containing YopX protein domain protein (Fragment)	NA
UHGV-2112964_27	eggNOG-mapper	40522.A8ASP1_BPA50	YopX protein	NA
UHGV-2112964_27	Pfam	PF09643	YopX protein	YopX
UHGV-2112964_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2112964_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2112964_28	PHROG	phrog_5051	NA	unknown function
UHGV-2112964_28	eggNOG-mapper	349123.Lreu23DRAFT_3108	NA	NA
UHGV-2112964_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2112964_30	UniRef90	UniRef90_A0A7I8D1K2	Sigma70_r4 domain-containing protein	NA
UHGV-2112964_30	eggNOG-mapper	887325.HMPREF0381_0089	sigma factor activity	NA
UHGV-2112964_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2112964_30	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-2112964_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2112964_31	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2112964_31	UniRef90	UniRef90_B0MKX5	HNHc domain-containing protein	NA
UHGV-2112964_31	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-2112964_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2112964_32	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-2112964_32	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-2112964_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2112964_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-2112964_33	UniRef90	UniRef90_B0MKW5	Phage portal protein, HK97 family	NA
UHGV-2112964_33	eggNOG-mapper	1304866.K413DRAFT_1223	Phage portal protein, HK97 family	NA
UHGV-2112964_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2112964_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2112964_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2112964_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2112964_35	PHROG	phrog_585	NA	unknown function
UHGV-2112964_35	UniRef90	UniRef90_UPI001627FED1	NA	NA
UHGV-2112964_35	eggNOG-mapper	1220551.SCHR_00805	NA	NA
UHGV-2112964_35	Pfam	PF10711	NA	DUF2513
UHGV-2112964_35	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-2112964_36	KOfam	K06904	NA	NA
UHGV-2112964_36	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2112964_36	UniRef90	UniRef90_D4JVJ3	Phage head maturation protease	NA
UHGV-2112964_36	eggNOG-mapper	1196031.ALEG01000039_gene1815	Phage prohead protease, HK97 family	NA
UHGV-2112964_36	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2112964_36	COG	COG3740	Phage head maturation protease	NA
UHGV-2112964_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-2112964_37	UniRef90	UniRef90_D4JVJ2	Phage major capsid protein, HK97 family	NA
UHGV-2112964_37	eggNOG-mapper	1304866.K413DRAFT_1225	phage major capsid protein, HK97 family	NA
UHGV-2112964_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2112964_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2112964_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2112964_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2112964_38	PHROG	phrog_6865	NA	unknown function
UHGV-2112964_38	Structural annotation	PF01281	NA	NA
UHGV-2112964_39	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2112964_39	UniRef90	UniRef90_A0A352DNU5	Phage gp6-like head-tail connector protein	NA
UHGV-2112964_39	eggNOG-mapper	632245.CLP_2693	Phage gp6-like head-tail connector protein	NA
UHGV-2112964_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2112964_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2112964_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2112964_40	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2112964_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2112964_41	Structural annotation	PF05657	NA	NA
UHGV-2112964_42	PHROG	phrog_88	major tail protein	tail
UHGV-2112964_42	UniRef90	UniRef90_D4JVI8	Phage major tail protein, phi13 family	NA
UHGV-2112964_42	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2112964_42	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2112964_43	UniRef90	UniRef90_D4JVI7	CdiA_C domain-containing protein	NA
UHGV-2112964_43	eggNOG-mapper	1284686.HMPREF1630_07715	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2112964_43	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-2112964_43	COG	COG2369	NA	NA
UHGV-2112964_44	Structural annotation	PF11836	NA	NA
UHGV-2112964_45	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2112964_45	UniRef90	UniRef90_D4JVI5	Phage terminase-like protein, large subunit	NA
UHGV-2112964_45	eggNOG-mapper	903814.ELI_1296	Phage Terminase	NA
UHGV-2112964_45	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2112964_45	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2112964_45	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2112964_45	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2112964_47	PHROG	phrog_888	NA	unknown function
UHGV-2112964_47	UniRef90	UniRef90_B0MKT9	SHOCT domain-containing protein	NA
UHGV-2112964_47	eggNOG-mapper	1151292.QEW_1347	Short C-terminal domain	NA
UHGV-2112964_47	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-2112964_48	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-2112964_49	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-2112964_49	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-2112964_49	UniRef90	UniRef90_D4JVI1	Tape measure domain	NA
UHGV-2112964_49	eggNOG-mapper	755731.Clo1100_1173	tape measure	NA
UHGV-2112964_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2112964_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2112964_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2112964_49	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2112964_50	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2112964_51	PHROG	phrog_25468	NA	unknown function
UHGV-2112964_51	UniRef90	UniRef90_B0MKT5	Hep/Hag repeat protein	NA
UHGV-2112964_51	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2112964_51	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2112964_53	PHROG	phrog_199	holin	lysis
UHGV-2112964_53	UniRef90	UniRef90_R6RVE6	Toxin secretion/phage lysis holin	NA
UHGV-2112964_53	eggNOG-mapper	1211817.CCAT010000008_gene975	toxin secretion phage lysis holin	NA
UHGV-2112964_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2112964_53	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2112964_53	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2112964_53	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2112964_54	KOfam	K07273	acm; lysozyme	NA
UHGV-2112964_54	PHROG	phrog_291	endolysin	lysis
UHGV-2112964_54	UniRef90	UniRef90_K1RE35	Hydrolase family 25 (Fragment)	NA
UHGV-2112964_54	eggNOG-mapper	1341157.RF007C_06880	Glycosyl hydrolases family 25	NA
UHGV-2112964_54	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2112964_54	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2112964_54	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA