UHGV-2113074

Genome information

Genome length 33,344 bps

CDS count 50

Completeness 71.20% (medium-quality)

geNomad score 0.9697

Prediction confidence Confident

Genome information
Genome ID	UHGV-2113074
vOTU ID	vOTU-021821
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029520\|Ga0244801_100573\|provirus_9673_43016
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9697
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.56
Jumbo phage	No

Genome content
Genome length	33,344 bps
GC content	48.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.73%
Average CDS length	615.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2113074_1	KOfam	K14059	int; integrase	NA
UHGV-2113074_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2113074_1	UniRef90	UniRef90_R6CB95	Putative phage integrase	NA
UHGV-2113074_1	eggNOG-mapper	1203606.HMPREF1526_02099	Belongs to the 'phage' integrase family	NA
UHGV-2113074_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2113074_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2113074_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2113074_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2113074_2	UniRef90	UniRef90_R6BEC9	SWIM-type domain-containing protein	NA
UHGV-2113074_2	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-2113074_2	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-2113074_3	PHROG	phrog_87	metallo-protease	other
UHGV-2113074_3	UniRef90	UniRef90_A0A1H8A0S9	Peptidase_M78 domain-containing protein	NA
UHGV-2113074_3	eggNOG-mapper	574375.BAGA_00350	IrrE N-terminal-like domain	NA
UHGV-2113074_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2113074_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2113074_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2113074_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2113074_4	UniRef90	UniRef90_A0A1H8A3L8	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2113074_4	eggNOG-mapper	1295642.H839_16148	transcriptional	NA
UHGV-2113074_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2113074_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2113074_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2113074_5	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-2113074_5	UniRef90	UniRef90_A0A5B6P9C0	XRE family transcriptional regulator	NA
UHGV-2113074_5	eggNOG-mapper	1007096.BAGW01000023_gene157	NA	NA
UHGV-2113074_5	Structural annotation	TIGR03070	NA	NA
UHGV-2113074_7	PHROG	phrog_2232	NA	unknown function
UHGV-2113074_7	UniRef90	UniRef90_UPI0015C060FB	NA	NA
UHGV-2113074_7	eggNOG-mapper	1321372.AQQB01000060_gene34	NA	NA
UHGV-2113074_7	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-2113074_7	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-2113074_12	PHROG	phrog_24518	NA	unknown function
UHGV-2113074_12	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-2113074_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2113074_15	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-2113074_15	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-2113074_16	PHROG	phrog_824	NA	unknown function
UHGV-2113074_16	UniRef90	UniRef90_R6BNN8	VRR-NUC domain protein	NA
UHGV-2113074_16	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-2113074_16	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2113074_18	PHROG	phrog_3777	NA	unknown function
UHGV-2113074_18	UniRef90	UniRef90_UPI00195A562E	NA	NA
UHGV-2113074_18	eggNOG-mapper	657322.FPR_00810	NA	NA
UHGV-2113074_18	Pfam	PF12957	NA	DUF3846
UHGV-2113074_18	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-2113074_18	Structural annotation	PF12957	NA	NA
UHGV-2113074_20	UniRef90	UniRef90_U2R3A7	NA	NA
UHGV-2113074_20	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-2113074_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2113074_22	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-2113074_22	eggNOG-mapper	552396.HMPREF0863_01424	sigma factor activity	NA
UHGV-2113074_22	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2113074_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2113074_22	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2113074_23	UniRef90	UniRef90_A0A4Z0Y8T7	Helix-turn-helix domain protein	NA
UHGV-2113074_23	eggNOG-mapper	1415774.U728_2928	Helix-turn-helix XRE-family like proteins	NA
UHGV-2113074_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2113074_23	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2113074_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2113074_26	PHROG	phrog_12862	NA	unknown function
UHGV-2113074_26	UniRef90	UniRef90_A0A1H8A445	Methyltransferase	NA
UHGV-2113074_26	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2113074_26	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-2113074_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2113074_26	COG	COG0863	DNA modification methylase	NA
UHGV-2113074_26	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2113074_27	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-2113074_27	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-2113074_27	eggNOG-mapper	935948.KE386495_gene1192	transposase activity	NA
UHGV-2113074_27	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2113074_27	Structural annotation	PF07471, COG4220	NA	NA
UHGV-2113074_28	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-2113074_28	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-2113074_28	UniRef90	UniRef90_A0A3G2RA25	Phage terminase large subunit family protein	NA
UHGV-2113074_28	eggNOG-mapper	935948.KE386495_gene1191	Phage terminase large subunit (GpA)	NA
UHGV-2113074_28	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-2113074_28	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-2113074_28	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-2113074_28	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-2113074_28	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-2113074_29	PHROG	phrog_118	head-tail adaptor	connector
UHGV-2113074_29	Structural annotation	PF19645, COG1382	NA	NA
UHGV-2113074_30	PHROG	phrog_21	portal protein	head and packaging
UHGV-2113074_30	UniRef90	UniRef90_UPI00047DEEF4	phage portal protein	NA
UHGV-2113074_30	eggNOG-mapper	935948.KE386495_gene1189	Phage portal protein, lambda family	NA
UHGV-2113074_30	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-2113074_30	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-2113074_30	COG	COG5511	Phage capsid protein	NA
UHGV-2113074_30	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-2113074_31	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-2113074_31	UniRef90	UniRef90_UPI00047C97B6	Mu-like prophage major head subunit gpT family protein	NA
UHGV-2113074_31	eggNOG-mapper	935948.KE386495_gene1188	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	NA
UHGV-2113074_31	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-2113074_31	COG	COG3087	Cell division protein FtsN	NA
UHGV-2113074_31	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-2113074_32	PHROG	phrog_122	head decoration	head and packaging
UHGV-2113074_32	UniRef90	UniRef90_A0A413FZC4	NA	NA
UHGV-2113074_32	eggNOG-mapper	352165.HMPREF7215_2787	NA	NA
UHGV-2113074_32	Pfam	PF09956	NA	DUF2190
UHGV-2113074_32	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-2113074_32	Structural annotation	PF09956, COG5471	NA	NA
UHGV-2113074_33	PHROG	phrog_2551	minor tail protein	tail
UHGV-2113074_33	eggNOG-mapper	478749.BRYFOR_07540	ATP-binding sugar transporter from pro-phage	NA
UHGV-2113074_33	Structural annotation	PF13856	NA	NA
UHGV-2113074_34	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-2113074_34	eggNOG-mapper	1235793.C809_02666	Prophage minor tail protein Z (GPZ)	NA
UHGV-2113074_34	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-2113074_34	Structural annotation	PF06763	NA	NA
UHGV-2113074_35	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-2113074_35	eggNOG-mapper	97139.C824_03375	NA	NA
UHGV-2113074_35	Structural annotation	PF08873	NA	NA
UHGV-2113074_36	KOfam	K06907	NA	NA
UHGV-2113074_36	PHROG	phrog_23	tail sheath	tail
UHGV-2113074_36	UniRef90	UniRef90_A0A173WPQ5	Phage tail sheath protein	NA
UHGV-2113074_36	eggNOG-mapper	887325.HMPREF0381_0393	COG3497 Phage tail sheath protein FI	NA
UHGV-2113074_36	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-2113074_36	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-2113074_37	KOfam	K06908	NA	NA
UHGV-2113074_37	PHROG	phrog_55	head closure	connector
UHGV-2113074_37	UniRef90	UniRef90_A0A139D6K0	Major tail tube protein	NA
UHGV-2113074_37	eggNOG-mapper	399741.Spro_4913	major tail tube protein	NA
UHGV-2113074_37	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-2113074_37	COG	COG3498	Phage tail tube protein FII	NA
UHGV-2113074_37	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-2113074_38	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-2113074_38	UniRef90	UniRef90_UPI00143C5D78	phage tail assembly protein	NA
UHGV-2113074_38	eggNOG-mapper	97139.C824_03371	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-2113074_38	Structural annotation	PF10109	NA	NA
UHGV-2113074_39	PHROG	phrog_973	tail length tape measure protein	tail
UHGV-2113074_39	UniRef90	UniRef90_A0A841KS35	Phage tail tape-measure protein	NA
UHGV-2113074_39	eggNOG-mapper	1449126.JQKL01000051_gene3160	Phage tail tape measure protein TP901	NA
UHGV-2113074_39	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2113074_40	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2113074_40	UniRef90	UniRef90_A0A7M2AN11	HNH endonuclease	NA
UHGV-2113074_40	eggNOG-mapper	1002809.SSIL_1642	HNH nucleases	NA
UHGV-2113074_40	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2113074_40	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2113074_41	PHROG	phrog_34082	tail length tape measure protein	tail
UHGV-2113074_41	UniRef90	UniRef90_UPI001367C7A1	tape measure protein	NA
UHGV-2113074_41	eggNOG-mapper	1415774.U728_509	phage tail tape measure protein	NA
UHGV-2113074_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2113074_42	PHROG	phrog_46	tail protein	tail
UHGV-2113074_42	UniRef90	UniRef90_A0A3A9CSH7	Phage tail protein	NA
UHGV-2113074_42	eggNOG-mapper	1157490.EL26_01725	Phage Tail Protein X	NA
UHGV-2113074_42	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-2113074_42	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-2113074_42	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-2113074_43	KOfam	K06905	NA	NA
UHGV-2113074_43	PHROG	phrog_52	tail protein	tail
UHGV-2113074_43	UniRef90	UniRef90_A0A162QMN2	Phage late control gene D protein	NA
UHGV-2113074_43	eggNOG-mapper	1460634.JCM19037_4579	COG3500 Phage protein D	NA
UHGV-2113074_43	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-2113074_43	COG	COG3500	NA	NA
UHGV-2113074_43	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-2113074_44	eggNOG-mapper	1444309.JAQG01000145_gene2681	Baseplate assembly protein	NA
UHGV-2113074_44	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-2113074_45	KOfam	K06906	NA	NA
UHGV-2113074_45	PHROG	phrog_76	tail protein	tail
UHGV-2113074_45	UniRef90	UniRef90_UPI00036BFA62	phage tail protein	NA
UHGV-2113074_45	eggNOG-mapper	1122917.KB899686_gene3298	Phage P2 GpU	NA
UHGV-2113074_45	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-2113074_45	COG	COG3499	NA	NA
UHGV-2113074_45	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-2113074_46	KOfam	K06903	NA	NA
UHGV-2113074_46	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-2113074_46	UniRef90	UniRef90_UPI000B359DB2	GPW/gp25 family protein	NA
UHGV-2113074_46	eggNOG-mapper	690850.Desaf_3558	Gene 25-like lysozyme	NA
UHGV-2113074_46	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2113074_46	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-2113074_47	PHROG	phrog_6	baseplate protein	tail
UHGV-2113074_47	UniRef90	UniRef90_UPI0013D3170F	baseplate J/gp47 family protein	NA
UHGV-2113074_47	eggNOG-mapper	1235793.C809_02678	Baseplate J-like protein	NA
UHGV-2113074_47	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2113074_47	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-2113074_47	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-2113074_48	PHROG	phrog_14404	baseplate protein	tail
UHGV-2113074_48	UniRef90	UniRef90_UPI00148226CF	phage tail protein I	NA
UHGV-2113074_48	eggNOG-mapper	1235797.C816_02832	Phage tail protein (Tail_P2_I)	NA
UHGV-2113074_48	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-2113074_48	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2113074_48	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-2113074_49	PHROG	phrog_327	tail protein	tail
UHGV-2113074_49	eggNOG-mapper	1235792.C808_00581	Phage tail-collar fibre protein	NA
UHGV-2113074_49	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-2113074_49	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-2113074_49	COG	COG5301	Phage-related tail fiber protein	NA