UHGV-2113444

Genome information

Genome length 42,326 bps

CDS count 75

Completeness 94.92% (high-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-2113444
vOTU ID	vOTU-070988
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029536\|Ga0244918_100308\|provirus_9513_54890
BioSample	SAMEA3708762
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.76
Jumbo phage	No

Genome content
Genome length	42,326 bps
GC content	36.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	90.68%
Average CDS length	515.24 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2113444_2	PHROG	phrog_9589	endolysin	lysis
UHGV-2113444_2	UniRef90	UniRef90_A0A173TVL9	Peptidase C51 domain-containing protein	NA
UHGV-2113444_2	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-2113444_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-2113444_2	COG	COG3942	Surface antigen	NA
UHGV-2113444_2	Structural annotation	PF01471, PF06940, TIGR02594, NF038080, COG3942	NA	NA
UHGV-2113444_3	PHROG	phrog_962	holin	lysis
UHGV-2113444_3	UniRef90	UniRef90_UPI001BA7CE6E	phage holin	NA
UHGV-2113444_3	eggNOG-mapper	1120998.AUFC01000022_gene406	Bacteriophage holin	NA
UHGV-2113444_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2113444_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2113444_3	COG	COG5546	NA	NA
UHGV-2113444_3	Structural annotation	PF04531, TIGR01598, COG5546	NA	NA
UHGV-2113444_4	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-2113444_4	PHROG	phrog_26878	virion structural protein	head and packaging
UHGV-2113444_4	UniRef90	UniRef90_UPI00156F7736	SGNH/GDSL hydrolase family protein	NA
UHGV-2113444_4	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2113444_4	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2113444_4	Structural annotation	PF16255, NF007819, COG2755	NA	NA
UHGV-2113444_7	PHROG	phrog_18444	NA	unknown function
UHGV-2113444_8	PHROG	phrog_6616	tail protein	tail
UHGV-2113444_8	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-2113444_8	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-2113444_8	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-2113444_9	PHROG	phrog_1194	NA	unknown function
UHGV-2113444_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2113444_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2113444_10	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-2113444_10	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-2113444_10	COG	COG5412	Phage-related protein	NA
UHGV-2113444_10	Structural annotation	PF11172	NA	NA
UHGV-2113444_11	PHROG	phrog_706	NA	unknown function
UHGV-2113444_11	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-2113444_11	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-2113444_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2113444_11	Structural annotation	PF06854	NA	NA
UHGV-2113444_12	PHROG	phrog_11299	NA	unknown function
UHGV-2113444_12	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-2113444_12	Structural annotation	PF10666	NA	NA
UHGV-2113444_13	PHROG	phrog_3099	NA	unknown function
UHGV-2113444_13	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-2113444_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2113444_14	PHROG	phrog_3266	tail completion	connector
UHGV-2113444_14	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2113444_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2113444_15	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-2113444_15	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2113444_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2113444_15	Structural annotation	PF11114	NA	NA
UHGV-2113444_16	PHROG	phrog_3366	NA	unknown function
UHGV-2113444_16	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-2113444_16	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2113444_17	PHROG	phrog_1233	NA	unknown function
UHGV-2113444_17	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-2113444_17	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-2113444_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2113444_18	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-2113444_19	PHROG	phrog_247	major head protein	head and packaging
UHGV-2113444_19	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-2113444_19	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-2113444_19	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-2113444_19	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-2113444_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2113444_20	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-2113444_20	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2113444_22	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-2113444_23	PHROG	phrog_20016	NA	unknown function
UHGV-2113444_23	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-2113444_23	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-2113444_23	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2113444_24	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-2113444_27	PHROG	phrog_21718	NA	unknown function
UHGV-2113444_27	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-2113444_28	PHROG	phrog_419	NA	unknown function
UHGV-2113444_28	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-2113444_28	eggNOG-mapper	358220.C380_08880	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-2113444_29	PHROG	phrog_1048	NA	unknown function
UHGV-2113444_29	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-2113444_30	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-2113444_30	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-2113444_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2113444_31	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-2113444_31	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-2113444_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2113444_31	COG	COG2369	NA	NA
UHGV-2113444_31	Structural annotation	PF06152	NA	NA
UHGV-2113444_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-2113444_33	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-2113444_33	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2113444_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2113444_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2113444_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2113444_35	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-2113444_35	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2113444_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2113444_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2113444_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2113444_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2113444_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-2113444_35	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2113444_36	PHROG	phrog_33130	NA	unknown function
UHGV-2113444_36	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2113444_38	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2113444_38	UniRef90	UniRef90_UPI001BA79D8F	helix-turn-helix domain-containing protein	NA
UHGV-2113444_38	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2113444_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2113444_38	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2113444_39	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2113444_39	UniRef90	UniRef90_A0A1C6HBF7	AP2 domain	NA
UHGV-2113444_39	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-2113444_39	Pfam	PF00847	AP2 domain	AP2
UHGV-2113444_39	Structural annotation	PF00847, MF_01580, NF007510	NA	NA
UHGV-2113444_42	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2113444_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2113444_42	UniRef90	UniRef90_UPI000E4D7A26	helix-turn-helix domain-containing protein	NA
UHGV-2113444_42	eggNOG-mapper	1235790.C805_00648	Helix-turn-helix XRE-family like proteins	NA
UHGV-2113444_42	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2113444_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2113444_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2113444_44	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-2113444_46	Structural annotation	PF14084	NA	NA
UHGV-2113444_49	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2113444_49	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2113444_49	UniRef90	UniRef90_A0A417V5I1	Adenylyl-sulfate reductase	NA
UHGV-2113444_49	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2113444_49	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2113444_49	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2113444_49	Structural annotation	PF01507, MF_00063, TIGR02055	NA	NA
UHGV-2113444_50	UniRef90	UniRef90_UPI001CD21EDD	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2113444_50	eggNOG-mapper	411490.ANACAC_02386	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2113444_50	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2113444_54	eggNOG-mapper	908337.HMPREF9257_0550	NA	NA
UHGV-2113444_57	UniRef90	UniRef90_UPI001BA881F1	transposase	NA
UHGV-2113444_57	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-2113444_57	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-2113444_58	PHROG	phrog_1123	NA	unknown function
UHGV-2113444_58	UniRef90	UniRef90_A0A6N9P096	DNA gyrase	NA
UHGV-2113444_58	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-2113444_58	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-2113444_59	PHROG	phrog_16304	NA	unknown function
UHGV-2113444_59	UniRef90	UniRef90_A0A0L0WEI9	NA	NA
UHGV-2113444_59	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-2113444_59	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-2113444_60	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2113444_60	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2113444_60	UniRef90	UniRef90_A0A417V5H0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2113444_60	eggNOG-mapper	1158604.I591_01786	Endodeoxyribonuclease RusA	NA
UHGV-2113444_60	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2113444_60	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2113444_60	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2113444_61	PHROG	phrog_7566	NA	unknown function
UHGV-2113444_61	UniRef90	UniRef90_A0A417V5I7	Phosphoenolpyruvate carboxykinase	NA
UHGV-2113444_61	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-2113444_62	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2113444_62	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-2113444_62	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-2113444_62	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2113444_63	PHROG	phrog_14970	NA	unknown function
UHGV-2113444_63	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-2113444_63	eggNOG-mapper	411476.BACOVA_03882	double-strand break repair protein	NA
UHGV-2113444_63	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-2113444_65	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2113444_65	UniRef90	UniRef90_UPI00156F9B5D	siphovirus Gp157 family protein	NA
UHGV-2113444_65	eggNOG-mapper	431943.CKL_3298	Siphovirus Gp157	NA
UHGV-2113444_65	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2113444_65	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2113444_68	PHROG	phrog_36464	NA	unknown function
UHGV-2113444_68	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-2113444_68	Structural annotation	PF09035	NA	NA
UHGV-2113444_70	AcrCatalog	cluster_17974	NA	NA
UHGV-2113444_73	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2113444_73	UniRef90	UniRef90_A0A173TZM8	Helix-turn-helix domain	NA
UHGV-2113444_73	eggNOG-mapper	1589749.A0A0B5A036_9CAUD	sequence-specific DNA binding	NA
UHGV-2113444_73	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2113444_74	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2113444_74	UniRef90	UniRef90_UPI001BAC2F52	helix-turn-helix domain-containing protein	NA
UHGV-2113444_74	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2113444_74	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2113444_74	Structural annotation	PF12844, NF041951, COG3655	NA	NA