UHGV-2114067

Genome information

Genome length 34,288 bps

CDS count 59

Completeness 97.49% (high-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-2114067
vOTU ID	vOTU-008092
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029536\|Ga0244918_100093\|provirus_84060_123179
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.04
Jumbo phage	No

Genome content
Genome length	34,288 bps
GC content	42.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.01%
Average CDS length	528.20 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2114067_1	PHROG	phrog_7854	endolysin	lysis
UHGV-2114067_1	UniRef90	UniRef90_A0A373SW30	MurNAc-LAA domain-containing protein	NA
UHGV-2114067_1	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2114067_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2114067_1	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-2114067_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2114067_1	Structural annotation	PF01520, TIGR02883, COG0860, COG5263	NA	NA
UHGV-2114067_2	PHROG	phrog_18218	NA	unknown function
UHGV-2114067_2	UniRef90	UniRef90_A0A373SUI3	Ribonuclease	NA
UHGV-2114067_2	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-2114067_2	Structural annotation	PF06946	NA	NA
UHGV-2114067_3	PHROG	phrog_1863	NA	unknown function
UHGV-2114067_3	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2114067_4	PHROG	phrog_20274	NA	unknown function
UHGV-2114067_4	UniRef90	UniRef90_A0A173TUK0	Predicted membrane protein	NA
UHGV-2114067_4	eggNOG-mapper	1203606.HMPREF1526_00964	Putative ABC-transporter type IV	NA
UHGV-2114067_4	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-2114067_4	COG	COG4905	NA	NA
UHGV-2114067_5	eggNOG-mapper	411461.DORFOR_00723	NA	NA
UHGV-2114067_6	eggNOG-mapper	411461.DORFOR_01184	NA	NA
UHGV-2114067_6	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-2114067_7	PHROG	phrog_32322	NA	unknown function
UHGV-2114067_7	UniRef90	UniRef90_A0A373SWC9	Ig-like_bact domain-containing protein	NA
UHGV-2114067_7	eggNOG-mapper	411461.DORFOR_00725	NA	NA
UHGV-2114067_7	Pfam	PF13754	NA	Big_3_4
UHGV-2114067_8	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-2114067_8	PHROG	phrog_11157	NA	unknown function
UHGV-2114067_8	UniRef90	UniRef90_A0A373STT7	Big_13 domain-containing protein	NA
UHGV-2114067_8	eggNOG-mapper	411461.DORFOR_01182	NA	NA
UHGV-2114067_8	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-2114067_8	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-2114067_8	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-2114067_8	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-2114067_8	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-2114067_9	PHROG	phrog_1382	NA	unknown function
UHGV-2114067_9	eggNOG-mapper	411461.DORFOR_00727	NA	NA
UHGV-2114067_10	PHROG	phrog_12931	NA	unknown function
UHGV-2114067_10	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-2114067_11	PHROG	phrog_25635	NA	unknown function
UHGV-2114067_11	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-2114067_11	Structural annotation	PF20747, NF012201	NA	NA
UHGV-2114067_12	PHROG	phrog_538	minor tail protein	tail
UHGV-2114067_12	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2114067_12	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-2114067_12	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2114067_12	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2114067_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2114067_13	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-2114067_13	eggNOG-mapper	1280698.AUJS01000007_gene1048	NA	NA
UHGV-2114067_13	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2114067_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2114067_14	UniRef90	UniRef90_A0A174L0T5	Phage-related protein	NA
UHGV-2114067_14	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-2114067_14	COG	COG1511	NA	NA
UHGV-2114067_14	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-2114067_15	PHROG	phrog_1633	NA	unknown function
UHGV-2114067_15	UniRef90	UniRef90_UPI0006C2F0F2	NA	NA
UHGV-2114067_15	eggNOG-mapper	1280698.AUJS01000007_gene1046	NA	NA
UHGV-2114067_15	Pfam	PF17318	NA	DUF5361
UHGV-2114067_15	Structural annotation	PF17318	NA	NA
UHGV-2114067_16	PHROG	phrog_1526	NA	unknown function
UHGV-2114067_16	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-2114067_17	PHROG	phrog_117	major tail protein	tail
UHGV-2114067_17	UniRef90	UniRef90_UPI00156E6ACC	phage tail protein	NA
UHGV-2114067_17	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-2114067_17	COG	COG5492	NA	NA
UHGV-2114067_17	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2114067_18	PHROG	phrog_123	tail terminator	connector
UHGV-2114067_18	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-2114067_18	Structural annotation	PF06141	NA	NA
UHGV-2114067_19	PHROG	phrog_387	neck protein	connector
UHGV-2114067_20	PHROG	phrog_501	head closure Hc1	connector
UHGV-2114067_20	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-2114067_20	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2114067_21	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2114067_21	UniRef90	UniRef90_R6G3G4	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2114067_21	Pfam	PF09355	NA	Phage_Gp19
UHGV-2114067_21	Structural annotation	PF09355	NA	NA
UHGV-2114067_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-2114067_23	UniRef90	UniRef90_A0A174L023	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2114067_23	eggNOG-mapper	205876.Q855V6_9CAUD	peptidase activity	NA
UHGV-2114067_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2114067_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2114067_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2114067_24	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-2114067_24	UniRef90	UniRef90_A0A396KYN2	NA	NA
UHGV-2114067_24	eggNOG-mapper	78345.BMERY_0881	NA	NA
UHGV-2114067_24	Pfam	PF14265	NA	DUF4355
UHGV-2114067_24	Structural annotation	PF14265	NA	NA
UHGV-2114067_25	Structural annotation	PF11344	NA	NA
UHGV-2114067_27	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-2114067_27	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-2114067_27	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-2114067_27	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-2114067_27	Structural annotation	PF20344	NA	NA
UHGV-2114067_28	PHROG	phrog_104	portal protein	head and packaging
UHGV-2114067_28	UniRef90	UniRef90_A0A174L3Q9	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2114067_28	eggNOG-mapper	1123263.AUKY01000112_gene2059	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2114067_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2114067_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2114067_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2114067_29	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-2114067_29	eggNOG-mapper	1123263.AUKY01000112_gene2060	phage terminase, large subunit	NA
UHGV-2114067_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2114067_29	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2114067_30	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-2114067_30	Structural annotation	PF19962	NA	NA
UHGV-2114067_31	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2114067_31	UniRef90	UniRef90_A0A3E4GMG2	HNH endonuclease	NA
UHGV-2114067_31	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-2114067_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2114067_33	UniRef90	UniRef90_A0A373STV4	NA	NA
UHGV-2114067_33	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-2114067_33	Pfam	PF07374	NA	DUF1492
UHGV-2114067_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2114067_33	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2114067_35	PHROG	phrog_20593	NA	unknown function
UHGV-2114067_38	PHROG	phrog_7566	NA	unknown function
UHGV-2114067_38	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-2114067_39	eggNOG-mapper	1196322.A370_05726	NA	NA
UHGV-2114067_40	PHROG	phrog_15077	NA	unknown function
UHGV-2114067_40	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-2114067_40	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-2114067_40	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2114067_41	PHROG	phrog_8470	NA	unknown function
UHGV-2114067_41	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-2114067_41	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-2114067_41	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2114067_41	Structural annotation	PF14284	NA	NA
UHGV-2114067_42	PHROG	phrog_4433	NA	unknown function
UHGV-2114067_42	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-2114067_43	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-2114067_44	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2114067_44	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2114067_44	UniRef90	UniRef90_A0A844KCI1	Ribonuclease HI	NA
UHGV-2114067_44	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-2114067_44	Pfam	PF00075	RNase H	RNase_H
UHGV-2114067_44	COG	COG0328	Ribonuclease HI	NA
UHGV-2114067_44	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2114067_45	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2114067_45	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-2114067_45	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2114067_48	UniRef90	UniRef90_A0A3E4LWT8	HTH psq-type domain-containing protein	NA
UHGV-2114067_48	eggNOG-mapper	1304866.K413DRAFT_1183	NA	NA
UHGV-2114067_48	Structural annotation	PF21291, MF_00535, NF007257, COG3655	NA	NA
UHGV-2114067_49	Structural annotation	PF20037, COG3212	NA	NA
UHGV-2114067_50	PHROG	phrog_28292	NA	unknown function
UHGV-2114067_50	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-2114067_50	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-2114067_52	UniRef90	UniRef90_A0A1C5ULX1	HTH cro/C1-type domain-containing protein	NA
UHGV-2114067_52	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2114067_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2114067_52	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2114067_55	UniRef90	UniRef90_UPI001EE0CE96	helix-turn-helix domain-containing protein	NA
UHGV-2114067_55	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2114067_56	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2114067_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2114067_56	UniRef90	UniRef90_UPI001EE0856C	helix-turn-helix domain-containing protein	NA
UHGV-2114067_56	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-2114067_56	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2114067_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2114067_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2114067_56	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2114067_57	PHROG	phrog_87	metallo-protease	other
UHGV-2114067_57	UniRef90	UniRef90_UPI001D01270F	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2114067_57	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-2114067_57	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2114067_57	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2114067_57	Structural annotation	PF06114, COG3800	NA	NA
UHGV-2114067_58	PHROG	phrog_1847	NA	unknown function
UHGV-2114067_58	UniRef90	UniRef90_UPI001D07EED3	NA	NA
UHGV-2114067_58	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-2114067_58	Pfam	PF13250	NA	DUF4041
UHGV-2114067_58	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2114067_58	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-2114067_58	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-2114067_59	KOfam	K14059	int; integrase	NA
UHGV-2114067_59	PHROG	phrog_1	integrase	integration and excision
UHGV-2114067_59	UniRef90	UniRef90_A0A373SU30	Site-specific integrase	NA
UHGV-2114067_59	eggNOG-mapper	610130.Closa_1360	Belongs to the 'phage' integrase family	NA
UHGV-2114067_59	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2114067_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2114067_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2114067_59	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA