UHGV-2114447

Genome information

Genome length 56,061 bps

CDS count 77

Completeness 99.90% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-2114447
vOTU ID	vOTU-008085
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029549\|Ga0244894_100214\|provirus_50148_106208
BioSample	SAMEA3708738
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.02
Jumbo phage	No

Genome content
Genome length	56,061 bps
GC content	42.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	94.15%
Average CDS length	689.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2114447_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2114447_1	UniRef90	UniRef90_UPI0013D7CB5B	site-specific integrase	NA
UHGV-2114447_1	eggNOG-mapper	888832.HMPREF9420_0429	Belongs to the 'phage' integrase family	NA
UHGV-2114447_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2114447_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2114447_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2114447_1	Structural annotation	PF00589, PF17293, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-2114447_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2114447_3	PHROG	phrog_822	amidase	lysis
UHGV-2114447_3	UniRef90	UniRef90_UPI000D0F443D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2114447_3	eggNOG-mapper	411477.PARMER_02014	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2114447_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2114447_3	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2114447_3	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-2114447_4	PHROG	phrog_199	holin	lysis
UHGV-2114447_4	UniRef90	UniRef90_F7LU54	Holin	NA
UHGV-2114447_4	eggNOG-mapper	1122991.BAIZ01000021_gene1644	Bacteriophage holin family	NA
UHGV-2114447_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2114447_4	NCBIFam	NF035928.1	bacteriophage holin	NA
UHGV-2114447_5	Structural annotation	PF06946	NA	NA
UHGV-2114447_6	PHROG	phrog_17180	NA	unknown function
UHGV-2114447_6	eggNOG-mapper	1235788.C802_00115	NA	NA
UHGV-2114447_7	PHROG	phrog_15074	NA	unknown function
UHGV-2114447_7	eggNOG-mapper	1235788.C802_00114	Phage minor structural protein	NA
UHGV-2114447_7	COG	COG4926	Phage-related protein	NA
UHGV-2114447_8	PHROG	phrog_19239	NA	unknown function
UHGV-2114447_8	eggNOG-mapper	457424.BFAG_03316	NA	NA
UHGV-2114447_8	Structural annotation	PF14301	NA	NA
UHGV-2114447_9	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2114447_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2114447_9	UniRef90	UniRef90_R5R761	Reverse transcriptase domain-containing protein	NA
UHGV-2114447_9	eggNOG-mapper	411479.BACUNI_00629	COG COG3344 Retron-type reverse transcriptase	NA
UHGV-2114447_9	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2114447_9	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2114447_9	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2114447_9	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-2114447_10	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-2114447_10	UniRef90	UniRef90_UPI00189E4515	four helix bundle protein	NA
UHGV-2114447_10	eggNOG-mapper	1122169.AREN01000047_gene2229	NA	NA
UHGV-2114447_10	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-2114447_10	Structural annotation	PF05635, NF033474, COG3781	NA	NA
UHGV-2114447_11	PHROG	phrog_4245	NA	unknown function
UHGV-2114447_11	eggNOG-mapper	411477.PARMER_02025	translation initiation factor activity	NA
UHGV-2114447_11	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2114447_12	PHROG	phrog_19280	NA	unknown function
UHGV-2114447_12	eggNOG-mapper	1122971.BAME01000006_gene890	domain, Protein	NA
UHGV-2114447_12	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2114447_13	PHROG	phrog_6305	tail protein	tail
UHGV-2114447_13	eggNOG-mapper	1122971.BAME01000006_gene891	NA	NA
UHGV-2114447_13	Structural annotation	PF05709, PF20195, TIGR01633, COG4722	NA	NA
UHGV-2114447_14	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-2114447_14	UniRef90	UniRef90_UPI001C704613	tape measure protein	NA
UHGV-2114447_14	eggNOG-mapper	1122971.BAME01000006_gene892	NA	NA
UHGV-2114447_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2114447_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2114447_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2114447_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2114447_16	PHROG	phrog_12247	NA	unknown function
UHGV-2114447_16	eggNOG-mapper	1122971.BAME01000006_gene894	NA	NA
UHGV-2114447_17	PHROG	phrog_17745	NA	unknown function
UHGV-2114447_17	UniRef90	UniRef90_UPI001C708146	BACON domain-containing protein	NA
UHGV-2114447_17	eggNOG-mapper	1122971.BAME01000006_gene895	NA	NA
UHGV-2114447_17	Pfam	PF13004	Putative binding domain, N-terminal	BACON
UHGV-2114447_17	Structural annotation	PF19190, PF04630, TIGR01603, COG5437	NA	NA
UHGV-2114447_18	PHROG	phrog_5597	NA	unknown function
UHGV-2114447_18	eggNOG-mapper	1122971.BAME01000006_gene896	NA	NA
UHGV-2114447_18	Structural annotation	PF05657	NA	NA
UHGV-2114447_19	PHROG	phrog_5377	NA	unknown function
UHGV-2114447_19	UniRef90	UniRef90_UPI001D078BFF	HK97 gp10 family phage protein	NA
UHGV-2114447_19	eggNOG-mapper	1122971.BAME01000006_gene897	NA	NA
UHGV-2114447_20	PHROG	phrog_19449	NA	unknown function
UHGV-2114447_20	eggNOG-mapper	1122971.BAME01000006_gene898	NA	NA
UHGV-2114447_20	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-2114447_21	PHROG	phrog_32776	NA	unknown function
UHGV-2114447_21	eggNOG-mapper	1122971.BAME01000006_gene899	NA	NA
UHGV-2114447_21	Structural annotation	PF20449	NA	NA
UHGV-2114447_22	PHROG	phrog_29	major head protein	head and packaging
UHGV-2114447_22	UniRef90	UniRef90_A0A838Z0T2	Major capsid protein	NA
UHGV-2114447_22	eggNOG-mapper	1122971.BAME01000006_gene900	Phage major capsid protein E	NA
UHGV-2114447_22	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2114447_22	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-2114447_23	PHROG	phrog_20501	NA	unknown function
UHGV-2114447_23	eggNOG-mapper	445970.ALIPUT_01658	NA	NA
UHGV-2114447_23	Structural annotation	PF21430, MF_00014, NF009633	NA	NA
UHGV-2114447_24	PHROG	phrog_5824	NA	unknown function
UHGV-2114447_24	eggNOG-mapper	1211813.CAPH01000015_gene742	NA	NA
UHGV-2114447_25	PHROG	phrog_32997	NA	unknown function
UHGV-2114447_25	UniRef90	UniRef90_A0A6I0JHC4	Ribosomal large subunit pseudouridine synthase B	NA
UHGV-2114447_25	eggNOG-mapper	1122971.BAME01000006_gene903	NA	NA
UHGV-2114447_26	UniRef90	UniRef90_A0A395UT93	DNA-directed RNA polymerase subunit beta	NA
UHGV-2114447_26	Structural annotation	PF18074, MF_02200, NF009759, COG4274	NA	NA
UHGV-2114447_27	UniRef90	UniRef90_UPI001C704138	NA	NA
UHGV-2114447_27	eggNOG-mapper	445970.ALIPUT_02647	NA	NA
UHGV-2114447_27	Pfam	PF12989	NA	DUF3873
UHGV-2114447_27	Structural annotation	PF12989, NF041597	NA	NA
UHGV-2114447_29	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-2114447_29	eggNOG-mapper	1122971.BAME01000006_gene904	NA	NA
UHGV-2114447_29	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-2114447_30	eggNOG-mapper	1235788.C802_00084	NA	NA
UHGV-2114447_32	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-2114447_34	PHROG	phrog_10608	NA	unknown function
UHGV-2114447_34	eggNOG-mapper	1123058.KB894219_gene147	NA	NA
UHGV-2114447_35	PHROG	phrog_1281	NA	unknown function
UHGV-2114447_35	UniRef90	UniRef90_A0A414HR46	NA	NA
UHGV-2114447_35	eggNOG-mapper	1122971.BAME01000119_gene6172	NA	NA
UHGV-2114447_35	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-2114447_35	COG	COG3600	NA	NA
UHGV-2114447_35	Structural annotation	PF13274, COG3600	NA	NA
UHGV-2114447_36	eggNOG-mapper	1122971.BAME01000119_gene6171	NA	NA
UHGV-2114447_36	AcrCatalog	cluster_28971	NA	NA
UHGV-2114447_38	PHROG	phrog_35295	NA	unknown function
UHGV-2114447_38	UniRef90	UniRef90_A0A139LH69	Gln_amidase domain-containing protein	NA
UHGV-2114447_38	eggNOG-mapper	470145.BACCOP_01152	cell adhesion	NA
UHGV-2114447_38	COG	COG2369	NA	NA
UHGV-2114447_38	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2114447_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-2114447_39	UniRef90	UniRef90_UPI001C6FE234	phage portal protein	NA
UHGV-2114447_39	eggNOG-mapper	1122971.BAME01000006_gene907	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2114447_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2114447_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2114447_40	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2114447_40	eggNOG-mapper	1122971.BAME01000006_gene908	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-2114447_40	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2114447_40	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2114447_41	PHROG	phrog_645	Rnase E	DNA, RNA and nucleotide metabolism
UHGV-2114447_41	eggNOG-mapper	1122971.BAME01000006_gene909	NA	NA
UHGV-2114447_42	UniRef90	UniRef90_A0A1H0N0K7	DNA repair photolyase	NA
UHGV-2114447_42	eggNOG-mapper	1122971.BAME01000006_gene910	DNA photolyase activity	NA
UHGV-2114447_42	COG	COG1533	DNA repair photolyase	NA
UHGV-2114447_42	Structural annotation	PF20903, MF_01865, NF033668, COG2100	NA	NA
UHGV-2114447_43	UniRef90	UniRef90_UPI001C702B25	AAA family ATPase	NA
UHGV-2114447_43	Structural annotation	PF18748, MF_00109, NF005257, COG0703	NA	NA
UHGV-2114447_44	PHROG	phrog_3271	NA	unknown function
UHGV-2114447_44	UniRef90	UniRef90_A0A516MHY1	aGPT-Pplase2 domain-containing protein	NA
UHGV-2114447_44	eggNOG-mapper	1564096.A0A0A0YT02_9CAUD	NA	NA
UHGV-2114447_44	Pfam	PF18724	Amino acid:DNA transferase	ADDT
UHGV-2114447_44	Structural annotation	PF18724, NF009788	NA	NA
UHGV-2114447_45	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2114447_45	UniRef90	UniRef90_A0A3R6C0L8	ParB domain-containing protein	NA
UHGV-2114447_45	eggNOG-mapper	1122971.BAME01000006_gene912	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)	NA
UHGV-2114447_45	COG	COG4123	tRNA1(Val) A37 N6-methylase TrmN6	NA
UHGV-2114447_45	Structural annotation	PF02195, TIGR04285, COG1475	NA	NA
UHGV-2114447_46	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2114447_46	eggNOG-mapper	1122971.BAME01000006_gene913	NA	NA
UHGV-2114447_46	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-2114447_48	PHROG	phrog_874	NA	unknown function
UHGV-2114447_48	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-2114447_48	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2114447_54	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2114447_54	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2114447_54	UniRef90	UniRef90_A0A0E2AQM3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2114447_54	eggNOG-mapper	742727.HMPREF9447_01720	C-5 cytosine-specific DNA methylase	NA
UHGV-2114447_54	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-2114447_54	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2114447_54	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2114447_54	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2114447_54	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-2114447_55	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2114447_55	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2114447_55	UniRef90	UniRef90_A0A2W7NIY2	DNA replication protein DnaC	NA
UHGV-2114447_55	eggNOG-mapper	679190.HMPREF0650_0106	NA	NA
UHGV-2114447_55	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-2114447_56	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2114447_56	eggNOG-mapper	1122971.BAME01000058_gene4477	HNH endonuclease	NA
UHGV-2114447_56	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2114447_57	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2114447_57	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2114447_57	UniRef90	UniRef90_UPI001C6FD99B	DEAD/DEAH box helicase	NA
UHGV-2114447_57	eggNOG-mapper	1122971.BAME01000058_gene4478	helicase superfamily c-terminal domain	NA
UHGV-2114447_57	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2114447_57	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2114447_57	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2114447_57	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2114447_57	Structural annotation	PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2114447_59	PHROG	phrog_11501	NA	unknown function
UHGV-2114447_59	UniRef90	UniRef90_UPI000237C828	NA	NA
UHGV-2114447_59	eggNOG-mapper	1122971.BAME01000058_gene4479	NA	NA
UHGV-2114447_59	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2114447_60	PHROG	phrog_12688	NA	unknown function
UHGV-2114447_60	eggNOG-mapper	1122971.BAME01000058_gene4480	NA	NA
UHGV-2114447_60	Structural annotation	PF10382, TIGR02276	NA	NA
UHGV-2114447_61	PHROG	phrog_4245	NA	unknown function
UHGV-2114447_61	UniRef90	UniRef90_UPI001BDE6F81	NA	NA
UHGV-2114447_61	Structural annotation	PF07603	NA	NA
UHGV-2114447_63	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2114447_63	UniRef90	UniRef90_UPI001C707DCD	YqaJ viral recombinase family protein	NA
UHGV-2114447_63	eggNOG-mapper	470145.BACCOP_01177	YqaJ-like viral recombinase domain	NA
UHGV-2114447_63	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2114447_63	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2114447_63	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2114447_63	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2114447_65	PHROG	phrog_3657	NA	unknown function
UHGV-2114447_65	eggNOG-mapper	470145.BACCOP_01180	NA	NA
UHGV-2114447_65	Structural annotation	PF04404	NA	NA
UHGV-2114447_67	PHROG	phrog_18744	NA	unknown function
UHGV-2114447_67	eggNOG-mapper	1121101.HMPREF1532_02568	NA	NA
UHGV-2114447_72	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2114447_72	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2114447_72	UniRef90	UniRef90_A0A413NKP6	XRE family transcriptional regulator	NA
UHGV-2114447_72	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2114447_72	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2114447_72	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2114447_73	UniRef90	UniRef90_A0A2V1J3M1	XRE family transcriptional regulator	NA
UHGV-2114447_73	eggNOG-mapper	1122971.BAME01000058_gene4484	NA	NA
UHGV-2114447_73	Structural annotation	PF13744, NF041951, COG1396	NA	NA
UHGV-2114447_74	PHROG	phrog_9710	NA	unknown function
UHGV-2114447_74	eggNOG-mapper	886379.AEWI01000001_gene1774	NA	NA
UHGV-2114447_74	Structural annotation	PF07022	NA	NA
UHGV-2114447_75	UniRef90	UniRef90_A0A3L7ZIR7	Arm-DNA-bind_5 domain-containing protein	NA
UHGV-2114447_75	eggNOG-mapper	411477.PARMER_03487	Belongs to the 'phage' integrase family	NA
UHGV-2114447_75	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2114447_75	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2114447_76	eggNOG-mapper	411477.PARMER_03487	Belongs to the 'phage' integrase family	NA
UHGV-2114447_76	COG	COG0582	Integrase/recombinase, includes phage integrase	NA